Wall clock time and date at job start Tue Mar 31 2020 08:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47261 * 2 1 4 4 H 1.09002 * 109.46829 * 304.77289 * 3 2 1 5 5 C 1.50701 * 109.46746 * 184.77929 * 3 2 1 6 6 H 1.07997 * 119.99819 * 245.44850 * 5 3 2 7 7 C 1.37873 * 120.00380 * 65.45361 * 5 3 2 8 8 N 1.31524 * 119.99767 * 9.48697 * 7 5 3 9 9 Si 1.86802 * 120.00391 * 189.49038 * 7 5 3 10 10 H 1.48498 * 109.47164 * 84.98891 * 9 7 5 11 11 H 1.48498 * 109.46973 * 204.99195 * 9 7 5 12 12 H 1.48499 * 109.46939 * 324.99049 * 9 7 5 13 13 O 1.45196 * 109.47484 * 64.77942 * 3 2 1 14 14 C 1.34236 * 116.99812 * 270.00168 * 13 3 2 15 15 O 1.20828 * 120.00076 * 359.97438 * 14 13 3 16 16 C 1.50693 * 119.99745 * 179.97438 * 14 13 3 17 17 N 1.46501 * 109.46889 * 179.97438 * 16 14 13 18 18 C 1.36908 * 125.06500 * 265.02141 * 17 16 14 19 19 C 1.34208 * 109.91986 * 180.02562 * 18 17 16 20 20 C 1.46533 * 107.00291 * 0.02562 * 19 18 17 21 21 C 1.39635 * 133.98768 * 180.02562 * 20 19 18 22 22 C 1.36607 * 119.79828 * 179.97438 * 21 20 19 23 23 C 1.39033 * 120.50298 * 359.97438 * 22 21 20 24 24 F 1.35103 * 119.69690 * 180.02562 * 23 22 21 25 25 C 1.37945 * 120.61044 * 0.02562 * 23 22 21 26 26 C 1.37691 * 125.06810 * 84.72250 * 17 16 14 27 27 H 1.08993 * 109.47498 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46761 * 300.00536 * 1 2 3 29 29 H 1.08995 * 109.46923 * 60.00303 * 1 2 3 30 30 H 1.09002 * 109.46761 * 239.99464 * 2 1 3 31 31 H 1.09005 * 109.46970 * 119.99865 * 2 1 3 32 32 H 0.97000 * 119.99724 * 180.02562 * 8 7 5 33 33 H 1.09000 * 109.47533 * 299.99842 * 16 14 13 34 34 H 1.09002 * 109.47580 * 59.99850 * 16 14 13 35 35 H 1.07993 * 125.03893 * 359.97438 * 18 17 16 36 36 H 1.08008 * 126.50186 * 180.02562 * 19 18 17 37 37 H 1.08003 * 120.10461 * 359.95316 * 21 20 19 38 38 H 1.07992 * 119.75181 * 179.97438 * 22 21 20 39 39 H 1.08001 * 120.12144 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6086 1.9803 -0.8442 5 6 3.5424 1.4440 -0.1184 6 1 4.1480 1.8094 0.6978 7 6 4.1439 0.9790 -1.2686 8 7 3.4144 0.7100 -2.3295 9 14 5.9946 0.7309 -1.3203 10 1 6.3300 -0.6083 -0.7733 11 1 6.4675 0.8247 -2.7249 12 1 6.6575 1.7793 -0.5038 13 8 1.6515 2.0933 1.2384 14 6 0.4683 2.7271 1.2485 15 8 -0.2197 2.7381 0.2553 16 6 -0.0020 3.4249 2.4986 17 7 -1.3111 4.0354 2.2540 18 6 -1.5145 5.3360 1.8780 19 6 -2.8284 5.5715 1.7388 20 6 -3.5236 4.3201 2.0517 21 6 -4.8664 3.9385 2.0838 22 6 -5.2005 2.6585 2.4244 23 6 -4.2132 1.7315 2.7391 24 9 -4.5619 0.4697 3.0732 25 6 -2.8809 2.0881 2.7134 26 6 -2.5199 3.3851 2.3624 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.8375 0.3826 -3.1386 33 1 -0.0839 2.7014 3.3097 34 1 0.7140 4.1995 2.7737 35 1 -0.7336 6.0646 1.7180 36 1 -3.2866 6.5062 1.4508 37 1 -5.6387 4.6533 1.8404 38 1 -6.2392 2.3643 2.4493 39 1 -2.1205 1.3615 2.9589 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842771663.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:54:55 Heat of formation + Delta-G solvation = -88.518577 kcal Electronic energy + Delta-G solvation = -24798.107607 eV Core-core repulsion = 21006.282175 eV Total energy + Delta-G solvation = -3791.825433 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.89528 -42.48660 -41.22576 -38.08871 -37.43553 -35.51916 -33.99657 -33.47405 -31.71884 -29.66945 -29.40488 -28.15672 -25.28939 -24.08094 -23.09631 -22.62205 -21.64364 -21.09920 -19.13335 -18.76646 -18.36877 -18.08799 -17.43497 -17.28257 -17.06894 -16.62241 -16.37463 -15.99684 -15.35499 -15.16188 -14.91843 -14.66218 -14.55349 -14.20946 -14.13550 -13.67442 -13.52339 -13.35148 -13.28672 -13.07681 -12.86115 -12.82124 -12.59217 -12.32584 -12.17354 -12.00704 -11.87337 -11.54556 -11.36067 -10.88966 -10.69008 -10.59232 -9.19746 -8.69838 -8.32965 -6.46954 -0.02897 0.43104 1.23123 1.32505 1.41697 1.43287 1.53722 1.77490 2.14904 2.40949 2.76136 2.98716 3.24796 3.59595 3.71611 3.81571 3.91124 4.03307 4.11988 4.18046 4.25420 4.28396 4.41077 4.45767 4.51336 4.76058 4.81025 4.95455 4.98468 5.07272 5.10889 5.16113 5.24798 5.37556 5.47530 5.54322 5.73373 5.76874 5.84317 6.06581 6.11162 6.22316 6.58421 6.90252 7.23810 8.76206 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.022398 B = 0.003660 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.796554 B = 7648.401454 C = 8379.367213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.121 4.121 3 C 0.227 3.773 4 H 0.009 0.991 5 C -0.552 4.552 6 H 0.070 0.930 7 C 0.020 3.980 8 N -0.917 5.917 9 Si 0.978 3.022 10 H -0.267 1.267 11 H -0.281 1.281 12 H -0.262 1.262 13 O -0.359 6.359 14 C 0.424 3.576 15 O -0.532 6.532 16 C 0.123 3.877 17 N -0.474 5.474 18 C 0.054 3.946 19 C -0.199 4.199 20 C -0.134 4.134 21 C -0.038 4.038 22 C -0.181 4.181 23 C 0.099 3.901 24 F -0.147 7.147 25 C -0.180 4.180 26 C 0.107 3.893 27 H 0.060 0.940 28 H 0.037 0.963 29 H 0.030 0.970 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.270 0.730 33 H 0.146 0.854 34 H 0.170 0.830 35 H 0.200 0.800 36 H 0.178 0.822 37 H 0.166 0.834 38 H 0.159 0.841 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.544 8.427 12.024 19.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.159 4.159 3 C 0.174 3.826 4 H 0.027 0.973 5 C -0.589 4.589 6 H 0.088 0.912 7 C -0.181 4.181 8 N -0.554 5.554 9 Si 0.801 3.199 10 H -0.192 1.192 11 H -0.206 1.206 12 H -0.186 1.186 13 O -0.275 6.275 14 C 0.266 3.734 15 O -0.422 6.422 16 C 0.000 4.000 17 N -0.158 5.158 18 C -0.069 4.069 19 C -0.223 4.223 20 C -0.139 4.139 21 C -0.056 4.056 22 C -0.201 4.201 23 C 0.079 3.921 24 F -0.126 7.126 25 C -0.202 4.202 26 C 0.001 3.999 27 H 0.079 0.921 28 H 0.056 0.944 29 H 0.050 0.950 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.163 0.837 34 H 0.188 0.812 35 H 0.217 0.783 36 H 0.196 0.804 37 H 0.183 0.817 38 H 0.176 0.824 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -12.394 8.191 11.578 18.835 hybrid contribution 0.955 -0.882 -0.700 1.476 sum -11.439 7.310 10.878 17.396 Atomic orbital electron populations 1.21678 0.96275 1.00543 0.99934 1.21780 0.94359 0.98231 1.01535 1.20343 0.94595 0.88927 0.78763 0.97284 1.21292 0.90283 1.44849 1.02472 0.91176 1.25820 1.04089 0.94258 0.93898 1.70118 1.38247 1.44168 1.02861 0.85274 0.77832 0.79319 0.77503 1.19212 1.20639 1.18640 1.86445 1.35472 1.62874 1.42674 1.24740 0.80103 0.77121 0.91409 1.90678 1.55908 1.58621 1.36967 1.21445 0.84555 1.01496 0.92489 1.43684 1.03369 1.09781 1.59014 1.22496 0.99202 0.84730 1.00487 1.22032 0.91928 0.98035 1.10293 1.19700 0.93335 0.94808 1.06074 1.20477 0.94310 0.95515 0.95289 1.20875 0.99846 0.93399 1.05966 1.17410 0.92717 0.79815 1.02161 1.91462 1.92717 1.38156 1.90254 1.19906 0.95661 0.95164 1.09481 1.18013 0.86052 0.93541 1.02318 0.92083 0.94407 0.95037 0.91612 0.92543 0.92102 0.83678 0.81245 0.78334 0.80438 0.81659 0.82363 0.85830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.60 8.56 71.98 0.62 -4.99 16 2 C -0.12 -5.95 5.54 30.60 0.17 -5.78 16 3 C 0.23 12.03 2.12 29.85 0.06 12.09 16 4 H 0.01 0.57 7.10 -2.39 -0.02 0.55 16 5 C -0.55 -30.47 8.82 25.60 0.23 -30.24 16 6 H 0.07 3.76 7.83 -2.91 -0.02 3.73 16 7 C 0.02 1.07 5.16 84.65 0.44 1.51 16 8 N -0.92 -52.80 12.16 21.45 0.26 -52.54 16 9 Si 0.98 42.11 29.55 68.60 2.03 44.14 16 10 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 11 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 12 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 13 O -0.36 -16.03 9.80 -51.47 -0.50 -16.54 16 14 C 0.42 16.28 6.47 71.23 0.46 16.74 16 15 O -0.53 -24.52 13.56 21.96 0.30 -24.22 16 16 C 0.12 3.05 6.59 85.63 0.56 3.61 16 17 N -0.47 -12.45 2.27 -519.97 -1.18 -13.64 16 18 C 0.05 1.17 11.28 82.98 0.94 2.10 16 19 C -0.20 -4.21 11.08 23.51 0.26 -3.95 16 20 C -0.13 -3.40 6.37 -20.19 -0.13 -3.53 16 21 C -0.04 -0.78 10.05 22.23 0.22 -0.56 16 22 C -0.18 -4.00 9.95 22.08 0.22 -3.78 16 23 C 0.10 2.72 7.28 22.39 0.16 2.88 16 24 F -0.15 -4.16 17.25 44.97 0.78 -3.39 16 25 C -0.18 -5.31 9.97 22.41 0.22 -5.09 16 26 C 0.11 3.09 6.79 39.03 0.27 3.36 16 27 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 28 H 0.04 1.59 6.06 -2.39 -0.01 1.57 16 29 H 0.03 1.50 7.78 -2.39 -0.02 1.48 16 30 H 0.07 3.54 6.81 -2.39 -0.02 3.53 16 31 H 0.06 2.61 8.14 -2.38 -0.02 2.59 16 32 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 33 H 0.15 2.92 8.14 -2.39 -0.02 2.90 16 34 H 0.17 2.83 8.12 -2.39 -0.02 2.81 16 35 H 0.20 2.94 8.06 -2.91 -0.02 2.92 16 36 H 0.18 2.57 8.06 -2.91 -0.02 2.55 16 37 H 0.17 2.20 8.06 -2.91 -0.02 2.18 16 38 H 0.16 2.57 8.06 -2.91 -0.02 2.54 16 39 H 0.12 3.58 8.06 -2.91 -0.02 3.56 16 Total: -1.00 -71.79 338.68 7.44 -64.35 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: 1.07 Total: 17.44 kcal Atomic # 6 Polarization: -20.30 SS G_CDS: 4.70 Total: -15.60 kcal Atomic # 7 Polarization: -65.26 SS G_CDS: -0.92 Total: -66.18 kcal Atomic # 8 Polarization: -40.55 SS G_CDS: -0.21 Total: -40.76 kcal Atomic # 9 Polarization: -4.16 SS G_CDS: 0.78 Total: -3.39 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Total: -71.79 7.44 -64.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842771663.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.167 kcal (2) G-P(sol) polarization free energy of solvation -71.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds