Wall clock time and date at job start Tue Mar 31 2020 08:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.29954 * 125.30533 * 2 1 4 4 O 1.41883 * 107.41270 * 180.02562 * 3 2 1 5 5 N 1.41877 * 106.38833 * 359.77988 * 4 3 2 6 6 C 1.29953 * 107.41297 * 0.37183 * 5 4 3 7 7 C 1.50699 * 125.30247 * 179.89359 * 6 5 4 8 8 C 1.50696 * 109.47192 * 269.69071 * 7 6 5 9 9 O 1.21284 * 120.00109 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00137 * 179.97438 * 8 7 6 11 11 C 1.46506 * 119.99873 * 179.97438 * 10 8 7 12 12 C 1.50703 * 109.46877 * 90.00288 * 11 10 8 13 13 H 1.08005 * 119.99817 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00081 * 179.97438 * 12 11 10 15 15 N 1.31520 * 119.99848 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00321 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46938 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47198 * 120.00527 * 16 14 12 19 19 H 1.48498 * 109.47360 * 240.00281 * 16 14 12 20 20 C 1.46498 * 119.99828 * 0.28058 * 10 8 7 21 21 C 1.50702 * 109.47034 * 269.71967 * 20 10 8 22 22 C 1.34514 * 125.79153 * 89.71611 * 21 20 10 23 23 C 1.41379 * 106.84290 * 179.89451 * 22 21 20 24 24 C 1.34510 * 106.83905 * 0.36747 * 23 22 21 25 25 O 1.34302 * 108.42539 * 359.78063 * 24 23 22 26 26 H 1.09003 * 109.46761 * 269.99562 * 1 2 3 27 27 H 1.08997 * 109.47548 * 29.99119 * 1 2 3 28 28 H 1.08993 * 109.47561 * 149.99961 * 1 2 3 29 29 H 1.09004 * 109.47103 * 149.69136 * 7 6 5 30 30 H 1.09000 * 109.47247 * 29.69014 * 7 6 5 31 31 H 1.09000 * 109.46803 * 209.99767 * 11 10 8 32 32 H 1.09000 * 109.47214 * 330.00561 * 11 10 8 33 33 H 0.96998 * 119.99944 * 179.97438 * 15 14 12 34 34 H 1.08993 * 109.47575 * 29.72405 * 20 10 8 35 35 H 1.09001 * 109.46870 * 149.72361 * 20 10 8 36 36 H 1.07999 * 126.57565 * 0.02562 * 22 21 20 37 37 H 1.07996 * 126.57857 * 180.17210 * 23 22 21 38 38 H 1.08007 * 125.78678 * 179.75137 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2580 1.0605 0.0000 4 8 3.6082 0.6246 -0.0006 5 7 3.5709 -0.7937 0.0043 6 6 2.3212 -1.1499 -0.0006 7 6 1.8208 -2.5714 -0.0003 8 6 1.6531 -3.0452 -1.4210 9 8 1.9137 -2.3016 -2.3430 10 7 1.2134 -4.2953 -1.6670 11 6 1.0498 -4.7556 -3.0482 12 6 2.3342 -5.3847 -3.5234 13 1 3.1869 -5.4367 -2.8625 14 6 2.4205 -5.8947 -4.8014 15 7 1.3820 -5.8318 -5.6060 16 14 4.0126 -6.6737 -5.3908 17 1 5.0223 -6.6198 -4.3031 18 1 3.7627 -8.0892 -5.7639 19 1 4.5185 -5.9320 -6.5736 20 6 0.8927 -5.1913 -0.5533 21 6 2.1210 -5.9760 -0.1702 22 6 3.0431 -5.6016 0.7348 23 6 4.0135 -6.6289 0.7799 24 6 3.6306 -7.5657 -0.1062 25 8 2.4838 -7.1650 -0.6788 26 1 -0.3633 -0.0001 1.0277 27 1 -0.3634 0.8900 -0.5137 28 1 -0.3634 -0.8899 -0.5138 29 1 0.8610 -2.6186 0.5142 30 1 2.5400 -3.2096 0.5130 31 1 0.2467 -5.4912 -3.0932 32 1 0.8025 -3.9078 -3.6869 33 1 1.4427 -6.1903 -6.5052 34 1 0.5560 -4.6036 0.3006 35 1 0.1024 -5.8784 -0.8558 36 1 3.0413 -4.6920 1.3169 37 1 4.8948 -6.6547 1.4035 38 1 4.1566 -8.4843 -0.3210 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845354453.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:21:51 Heat of formation + Delta-G solvation = 79.194886 kcal Electronic energy + Delta-G solvation = -25246.888236 eV Core-core repulsion = 21482.255366 eV Total energy + Delta-G solvation = -3764.632870 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.21078 -41.47154 -39.24667 -35.47828 -34.53541 -33.44007 -32.84283 -32.50382 -30.23022 -29.68294 -28.78322 -27.19393 -25.49797 -23.39324 -22.19881 -21.42964 -20.79739 -20.49645 -18.77737 -17.45497 -17.02351 -16.81068 -16.43404 -15.77938 -15.55824 -15.24583 -14.99822 -14.60237 -14.41714 -14.20662 -13.59426 -13.51908 -13.09115 -13.01247 -12.81561 -12.64106 -12.43936 -12.36207 -12.07247 -11.73821 -11.71390 -11.46577 -11.27353 -10.94988 -10.80774 -10.66595 -10.61825 -10.23184 -9.72363 -9.60314 -9.27906 -8.47186 -8.28167 -7.95493 -6.08427 -4.10929 0.59154 1.94244 2.02985 2.69158 2.83429 2.97722 3.14969 3.27987 3.36156 3.39571 3.42399 3.70349 3.89831 4.42886 4.52887 4.72949 4.81696 4.95141 4.99846 5.09013 5.13197 5.18513 5.24206 5.28168 5.35220 5.43783 5.58826 5.62090 5.74709 6.03681 6.11377 6.37762 6.74951 6.80886 6.96987 7.22692 7.33736 7.49987 7.87751 8.06373 8.15674 8.65022 8.93036 9.53749 11.00445 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.012754 B = 0.005275 C = 0.004458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.837431 B = 5306.291502 C = 6279.398681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.089 3.911 3 N -0.284 5.284 4 O 0.023 5.977 5 N -0.260 5.260 6 C 0.102 3.898 7 C -0.093 4.093 8 C 0.516 3.484 9 O -0.522 6.522 10 N -0.588 5.588 11 C 0.245 3.755 12 C -0.517 4.517 13 H 0.057 0.943 14 C 0.063 3.937 15 N -0.896 5.896 16 Si 0.894 3.106 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.283 1.283 20 C 0.185 3.815 21 C -0.007 4.007 22 C -0.220 4.220 23 C -0.220 4.220 24 C -0.037 4.037 25 O -0.150 6.150 26 H 0.096 0.904 27 H 0.090 0.910 28 H 0.095 0.905 29 H 0.123 0.877 30 H 0.122 0.878 31 H 0.037 0.963 32 H 0.048 0.952 33 H 0.262 0.738 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.141 0.859 37 H 0.142 0.858 38 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.580 1.645 16.597 17.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.094 4.094 3 N -0.030 5.030 4 O -0.118 6.118 5 N -0.003 5.003 6 C -0.082 4.082 7 C -0.134 4.134 8 C 0.300 3.700 9 O -0.398 6.398 10 N -0.320 5.320 11 C 0.127 3.873 12 C -0.556 4.556 13 H 0.076 0.924 14 C -0.139 4.139 15 N -0.535 5.535 16 Si 0.722 3.278 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.209 1.209 20 C 0.061 3.939 21 C -0.060 4.060 22 C -0.240 4.240 23 C -0.239 4.239 24 C -0.106 4.106 25 O -0.043 6.043 26 H 0.114 0.886 27 H 0.109 0.891 28 H 0.113 0.887 29 H 0.141 0.859 30 H 0.140 0.860 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.159 0.841 37 H 0.160 0.840 38 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -3.483 2.686 15.655 16.261 hybrid contribution 0.826 -1.009 -0.326 1.344 sum -2.657 1.677 15.329 15.648 Atomic orbital electron populations 1.20578 0.84327 1.05753 1.04416 1.24491 1.00250 0.88876 0.95763 1.79850 0.89214 1.19696 1.14205 1.93368 1.20103 1.13643 1.84690 1.79949 1.17430 0.90986 1.11973 1.23820 0.89955 0.97806 0.96628 1.20705 1.04373 0.89093 0.99236 1.19754 0.78453 0.82740 0.89058 1.90760 1.48760 1.54513 1.45718 1.48334 1.63998 1.10591 1.09072 1.19450 0.97449 0.95833 0.74557 1.21354 0.98165 1.37707 0.98349 0.92443 1.24867 0.96548 0.96045 0.96423 1.69924 1.29527 1.46422 1.07655 0.86493 0.83684 0.78806 0.78816 1.19834 1.20921 1.20922 1.19930 0.91505 0.91793 0.90712 1.22925 1.00070 0.86709 0.96286 1.21511 0.96765 1.01530 1.04158 1.21690 1.02291 0.95907 1.04054 1.23978 0.88253 1.01406 0.96965 1.84147 1.34979 1.31860 1.53342 0.88591 0.89070 0.88652 0.85892 0.86038 0.94471 0.93407 0.92790 0.88228 0.88166 0.84095 0.84009 0.78700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.77 10.05 36.00 0.36 -0.41 16 2 C 0.09 1.18 7.19 -82.38 -0.59 0.59 16 3 N -0.28 -4.43 12.98 33.74 0.44 -3.99 16 4 O 0.02 0.40 13.71 12.02 0.16 0.57 16 5 N -0.26 -4.58 12.98 33.74 0.44 -4.14 16 6 C 0.10 1.51 5.68 -82.38 -0.47 1.04 16 7 C -0.09 -1.17 4.42 -29.04 -0.13 -1.30 16 8 C 0.52 9.49 7.67 -10.99 -0.08 9.40 16 9 O -0.52 -12.31 15.61 5.55 0.09 -12.22 16 10 N -0.59 -10.94 2.44 -176.43 -0.43 -11.37 16 11 C 0.25 5.95 5.21 -5.19 -0.03 5.93 16 12 C -0.52 -14.23 9.39 -34.44 -0.32 -14.56 16 13 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 14 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 15 N -0.90 -26.11 13.29 55.43 0.74 -25.37 16 16 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 17 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 20 C 0.19 2.53 5.79 -5.19 -0.03 2.50 16 21 C -0.01 -0.11 6.90 -35.62 -0.25 -0.36 16 22 C -0.22 -3.09 9.99 -39.70 -0.40 -3.49 16 23 C -0.22 -3.06 10.91 -39.71 -0.43 -3.50 16 24 C -0.04 -0.55 12.09 29.41 0.36 -0.19 16 25 O -0.15 -2.64 10.65 5.70 0.06 -2.58 16 26 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.09 0.74 7.77 -51.93 -0.40 0.33 16 29 H 0.12 0.90 7.03 -51.93 -0.36 0.53 16 30 H 0.12 1.44 5.13 -51.93 -0.27 1.17 16 31 H 0.04 0.90 7.89 -51.93 -0.41 0.49 16 32 H 0.05 1.31 7.42 -51.93 -0.39 0.93 16 33 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 34 H 0.10 0.85 6.43 -51.93 -0.33 0.52 16 35 H 0.10 1.29 7.89 -51.93 -0.41 0.88 16 36 H 0.14 1.61 6.16 -52.49 -0.32 1.28 16 37 H 0.14 1.62 8.06 -52.49 -0.42 1.20 16 38 H 0.20 2.19 8.06 -52.48 -0.42 1.76 16 LS Contribution 337.50 15.07 5.09 5.09 Total: -1.00 -36.71 337.50 -4.68 -41.39 By element: Atomic # 1 Polarization: 2.35 SS G_CDS: -4.13 Total: -1.78 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: -2.11 Total: -2.66 kcal Atomic # 7 Polarization: -46.06 SS G_CDS: 1.18 Total: -44.88 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: 0.31 Total: -14.24 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -36.71 -4.68 -41.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845354453.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.584 kcal (2) G-P(sol) polarization free energy of solvation -36.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds