Wall clock time and date at job start Tue Mar 31 2020 08:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.46906 * 2 1 4 4 H 1.08995 * 109.47759 * 304.99896 * 3 2 1 5 5 N 1.46503 * 109.47292 * 65.00418 * 3 2 1 6 6 C 1.34779 * 119.99565 * 261.82856 * 5 3 2 7 7 O 1.21609 * 119.99835 * 359.97438 * 6 5 3 8 8 C 1.47429 * 119.99686 * 179.97438 * 6 5 3 9 9 C 1.39672 * 120.21571 * 0.02562 * 8 6 5 10 10 C 1.37810 * 119.93995 * 180.02562 * 9 8 6 11 11 C 1.38660 * 120.37788 * 359.97438 * 10 9 8 12 12 C 1.37912 * 120.43861 * 0.03150 * 11 10 9 13 13 C 1.39108 * 120.05389 * 359.96939 * 12 11 10 14 14 S 1.76199 * 120.19356 * 180.02562 * 13 12 11 15 15 C 1.76205 * 99.99828 * 351.64123 * 14 13 12 16 16 H 1.08003 * 119.99494 * 354.41122 * 15 14 13 17 17 C 1.38806 * 119.99795 * 174.42010 * 15 14 13 18 18 N 1.31552 * 119.99987 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99652 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46825 * 60.00034 * 19 17 15 21 21 H 1.48503 * 109.46860 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47468 * 300.00143 * 19 17 15 23 23 C 1.53006 * 109.46916 * 184.99973 * 3 2 1 24 24 C 1.53007 * 117.49635 * 133.52611 * 23 3 2 25 25 C 1.53001 * 117.49778 * 64.86895 * 23 3 2 26 26 H 1.08998 * 109.47325 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47212 * 299.99674 * 1 2 3 28 28 H 1.08999 * 109.47415 * 60.00340 * 1 2 3 29 29 H 1.09001 * 109.47212 * 240.00326 * 2 1 3 30 30 H 1.09003 * 109.47145 * 120.00094 * 2 1 3 31 31 H 0.96996 * 120.00007 * 81.82782 * 5 3 2 32 32 H 1.08003 * 120.03167 * 0.26981 * 9 8 6 33 33 H 1.08000 * 119.81137 * 179.97438 * 10 9 8 34 34 H 1.08002 * 119.77867 * 180.02562 * 11 10 9 35 35 H 1.08003 * 119.97066 * 179.97438 * 12 11 10 36 36 H 0.97002 * 119.99780 * 179.97438 * 18 17 15 37 37 H 1.08999 * 115.55230 * 279.19584 * 23 3 2 38 38 H 1.08997 * 117.49896 * 359.97438 * 24 23 3 39 39 H 1.09003 * 117.49478 * 145.02140 * 24 23 3 40 40 H 1.09004 * 117.49207 * 214.98304 * 25 23 3 41 41 H 1.08991 * 117.49908 * 359.96909 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 7 1.6524 2.0975 1.2519 6 6 0.5610 2.8874 1.2893 7 8 -0.1017 3.0568 0.2838 8 6 0.1707 3.5461 2.5492 9 6 0.9290 3.3551 3.7065 10 6 0.5587 3.9731 4.8812 11 6 -0.5640 4.7858 4.9223 12 6 -1.3240 4.9853 3.7889 13 6 -0.9668 4.3702 2.5934 14 16 -1.9348 4.6230 1.1430 15 6 -3.3040 5.4889 1.8361 16 1 -3.3744 5.6201 2.9058 17 6 -4.2921 6.0021 1.0073 18 7 -4.2061 5.8424 -0.2957 19 14 -5.7440 6.9194 1.7421 20 1 -5.2532 8.1039 2.4914 21 1 -6.6510 7.3638 0.6535 22 1 -6.4816 6.0204 2.6656 23 6 3.5648 1.4443 -0.1257 24 6 4.1891 2.4081 -1.1369 25 6 4.1672 0.9047 -1.4245 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 2.1813 1.9626 2.0537 32 1 1.8070 2.7267 3.6798 33 1 1.1463 3.8236 5.7750 34 1 -0.8451 5.2658 5.8481 35 1 -2.1973 5.6195 3.8296 36 1 -4.8968 6.2008 -0.8749 37 1 4.1129 1.2596 0.7981 38 1 3.5135 3.0404 -1.7129 39 1 5.1481 2.8570 -0.8784 40 1 5.1118 0.3652 -1.3550 41 1 3.4772 0.5480 -2.1891 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855860684.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:52:30 Heat of formation + Delta-G solvation = 5.731909 kcal Electronic energy + Delta-G solvation = -22429.298989 eV Core-core repulsion = 19207.773740 eV Total energy + Delta-G solvation = -3221.525249 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.78957 -38.12988 -37.07134 -34.44238 -32.74000 -32.21962 -30.31013 -30.22698 -26.72762 -25.80720 -23.26150 -22.58119 -21.91943 -21.71573 -20.37588 -20.02589 -18.07650 -17.11321 -16.52984 -15.81545 -15.19876 -15.00671 -14.75330 -14.42822 -14.33297 -13.86164 -13.69012 -13.36636 -12.98616 -12.92585 -12.64485 -12.31409 -11.89481 -11.63892 -11.56791 -11.36420 -11.22238 -11.17508 -10.98793 -10.88024 -10.72513 -10.55049 -10.32562 -10.11155 -9.79175 -9.59783 -9.45396 -8.73177 -8.66207 -8.31529 -8.03604 -6.51595 -6.44740 -4.14952 1.55868 2.03433 3.11749 3.14698 3.18853 3.39182 3.45580 3.56091 3.81251 4.08060 4.49610 4.55395 4.81195 4.90249 4.96132 5.13291 5.15152 5.25437 5.32860 5.35476 5.39980 5.51950 5.56919 5.61370 5.79769 5.84753 5.95625 6.00231 6.02691 6.10107 6.13373 6.17554 6.35713 6.40710 6.60807 6.63405 6.84674 6.90430 7.05661 7.15027 7.45753 7.60534 7.97584 8.16999 8.85654 9.01351 10.58397 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.016301 B = 0.004257 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.245620 B = 6575.371309 C = 7592.271396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.127 4.127 3 C 0.174 3.826 4 H 0.096 0.904 5 N -0.729 5.729 6 C 0.554 3.446 7 O -0.508 6.508 8 C -0.177 4.177 9 C -0.061 4.061 10 C -0.187 4.187 11 C -0.078 4.078 12 C -0.153 4.153 13 C -0.057 4.057 14 S 0.186 5.814 15 C -0.597 4.597 16 H 0.090 0.910 17 C 0.084 3.916 18 N -0.858 5.858 19 Si 0.918 3.082 20 H -0.270 1.270 21 H -0.280 1.280 22 H -0.270 1.270 23 C -0.162 4.162 24 C -0.176 4.176 25 C -0.173 4.173 26 H 0.046 0.954 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.393 0.607 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.138 0.862 36 H 0.275 0.725 37 H 0.104 0.896 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.300 -8.825 3.411 17.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.166 4.166 3 C 0.069 3.931 4 H 0.114 0.886 5 N -0.383 5.383 6 C 0.344 3.656 7 O -0.385 6.385 8 C -0.192 4.192 9 C -0.081 4.081 10 C -0.212 4.212 11 C -0.100 4.100 12 C -0.178 4.178 13 C -0.177 4.177 14 S 0.450 5.550 15 C -0.743 4.743 16 H 0.107 0.893 17 C -0.127 4.127 18 N -0.491 5.491 19 Si 0.743 3.257 20 H -0.195 1.195 21 H -0.206 1.206 22 H -0.195 1.195 23 C -0.180 4.180 24 C -0.213 4.213 25 C -0.210 4.210 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.227 0.773 32 H 0.128 0.872 33 H 0.129 0.871 34 H 0.129 0.871 35 H 0.155 0.845 36 H 0.085 0.915 37 H 0.122 0.878 38 H 0.116 0.884 39 H 0.111 0.889 40 H 0.112 0.888 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 13.612 -8.873 0.990 16.279 hybrid contribution -0.718 0.891 2.361 2.624 sum 12.895 -7.982 3.351 15.531 Atomic orbital electron populations 1.21721 0.94868 1.00702 1.03282 1.21872 0.96882 0.96075 1.01765 1.20490 0.90685 0.93235 0.88719 0.88554 1.45807 1.29571 1.50716 1.12173 1.18266 0.80244 0.78424 0.88688 1.90776 1.51109 1.61532 1.35045 1.19140 1.00223 1.06230 0.93620 1.20895 0.97296 0.97567 0.92377 1.20629 0.99841 1.03234 0.97495 1.21080 0.94561 0.96833 0.97492 1.21423 1.01826 1.02517 0.92066 1.23102 0.97158 0.95735 1.01724 1.84734 1.11673 1.57079 1.01471 1.24025 1.10200 1.42973 0.97142 0.89268 1.25083 0.98251 0.94818 0.94528 1.69965 1.34260 1.41871 1.02984 0.86218 0.80606 0.79910 0.78943 1.19508 1.20557 1.19483 1.22525 0.95345 1.05596 0.94579 1.23040 1.02565 0.92673 1.03033 1.22923 1.02421 0.96863 0.98832 0.93485 0.92385 0.92103 0.91460 0.92189 0.77258 0.87219 0.87146 0.87074 0.84468 0.91500 0.87776 0.88437 0.88921 0.88825 0.88543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.09 37.16 0.34 -1.78 16 2 C -0.13 -1.47 5.55 -26.73 -0.15 -1.62 16 3 C 0.17 2.20 2.42 -67.93 -0.16 2.03 16 4 H 0.10 1.49 6.99 -51.93 -0.36 1.12 16 5 N -0.73 -10.24 4.67 -54.88 -0.26 -10.50 16 6 C 0.55 10.50 6.48 -12.52 -0.08 10.42 16 7 O -0.51 -11.49 12.56 5.27 0.07 -11.42 16 8 C -0.18 -3.47 5.89 -104.75 -0.62 -4.09 16 9 C -0.06 -0.97 9.53 -39.20 -0.37 -1.34 16 10 C -0.19 -2.89 10.02 -39.58 -0.40 -3.29 16 11 C -0.08 -1.33 10.03 -39.54 -0.40 -1.73 16 12 C -0.15 -3.21 9.20 -39.38 -0.36 -3.57 16 13 C -0.06 -1.31 6.14 -38.39 -0.24 -1.54 16 14 S 0.19 4.97 18.56 -107.50 -2.00 2.97 16 15 C -0.60 -16.49 8.98 30.94 0.28 -16.21 16 16 H 0.09 2.34 5.03 -52.48 -0.26 2.07 16 17 C 0.08 2.31 5.49 -17.46 -0.10 2.21 16 18 N -0.86 -24.75 13.22 55.49 0.73 -24.02 16 19 Si 0.92 20.71 29.55 -169.99 -5.02 15.69 16 20 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 21 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 22 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 23 C -0.16 -1.61 5.34 -90.61 -0.48 -2.09 16 24 C -0.18 -1.75 10.18 -26.69 -0.27 -2.02 16 25 C -0.17 -1.50 9.74 -26.69 -0.26 -1.76 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.97 6.71 -51.93 -0.35 0.62 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.07 0.68 7.47 -51.93 -0.39 0.29 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.39 4.46 6.77 -40.82 -0.28 4.19 16 32 H 0.11 1.31 6.40 -52.48 -0.34 0.97 16 33 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 34 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 35 H 0.14 3.00 5.09 -52.48 -0.27 2.73 16 36 H 0.28 7.36 8.31 -40.82 -0.34 7.02 16 37 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.10 1.09 8.08 -51.93 -0.42 0.67 16 39 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.10 0.84 7.90 -51.93 -0.41 0.43 16 LS Contribution 347.68 15.07 5.24 5.24 Total: -1.00 -30.96 347.68 -10.10 -41.06 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -5.59 Total: 7.35 kcal Atomic # 6 Polarization: -23.10 SS G_CDS: -3.27 Total: -26.37 kcal Atomic # 7 Polarization: -34.99 SS G_CDS: 0.48 Total: -34.51 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.07 Total: -11.42 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: 4.97 SS G_CDS: -2.00 Total: 2.97 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.96 -10.10 -41.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855860684.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.794 kcal (2) G-P(sol) polarization free energy of solvation -30.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds