Wall clock time and date at job start Tue Mar 31 2020 08:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.46906 * 2 1 4 4 H 1.08995 * 109.47759 * 304.99896 * 3 2 1 5 5 N 1.46503 * 109.47292 * 65.00418 * 3 2 1 6 6 C 1.34779 * 119.99565 * 261.82856 * 5 3 2 7 7 O 1.21609 * 119.99835 * 359.97438 * 6 5 3 8 8 C 1.47429 * 119.99686 * 179.97438 * 6 5 3 9 9 C 1.39672 * 120.21571 * 0.02562 * 8 6 5 10 10 C 1.37810 * 119.93995 * 180.02562 * 9 8 6 11 11 C 1.38660 * 120.37788 * 359.97438 * 10 9 8 12 12 C 1.37912 * 120.43861 * 0.03150 * 11 10 9 13 13 C 1.39108 * 120.05389 * 359.96939 * 12 11 10 14 14 S 1.76199 * 120.19356 * 180.02562 * 13 12 11 15 15 C 1.76205 * 99.99828 * 351.64123 * 14 13 12 16 16 H 1.08003 * 119.99494 * 354.41122 * 15 14 13 17 17 C 1.38806 * 119.99795 * 174.42010 * 15 14 13 18 18 N 1.31552 * 119.99987 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99652 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46825 * 60.00034 * 19 17 15 21 21 H 1.48503 * 109.46860 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47468 * 300.00143 * 19 17 15 23 23 C 1.53006 * 109.46916 * 184.99973 * 3 2 1 24 24 C 1.53007 * 117.49635 * 133.52611 * 23 3 2 25 25 C 1.53001 * 117.49778 * 64.86895 * 23 3 2 26 26 H 1.08998 * 109.47325 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47212 * 299.99674 * 1 2 3 28 28 H 1.08999 * 109.47415 * 60.00340 * 1 2 3 29 29 H 1.09001 * 109.47212 * 240.00326 * 2 1 3 30 30 H 1.09003 * 109.47145 * 120.00094 * 2 1 3 31 31 H 0.96996 * 120.00007 * 81.82782 * 5 3 2 32 32 H 1.08003 * 120.03167 * 0.26981 * 9 8 6 33 33 H 1.08000 * 119.81137 * 179.97438 * 10 9 8 34 34 H 1.08002 * 119.77867 * 180.02562 * 11 10 9 35 35 H 1.08003 * 119.97066 * 179.97438 * 12 11 10 36 36 H 0.97002 * 119.99780 * 179.97438 * 18 17 15 37 37 H 1.08999 * 115.55230 * 279.19584 * 23 3 2 38 38 H 1.08997 * 117.49896 * 359.97438 * 24 23 3 39 39 H 1.09003 * 117.49478 * 145.02140 * 24 23 3 40 40 H 1.09004 * 117.49207 * 214.98304 * 25 23 3 41 41 H 1.08991 * 117.49908 * 359.96909 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 7 1.6524 2.0975 1.2519 6 6 0.5610 2.8874 1.2893 7 8 -0.1017 3.0568 0.2838 8 6 0.1707 3.5461 2.5492 9 6 0.9290 3.3551 3.7065 10 6 0.5587 3.9731 4.8812 11 6 -0.5640 4.7858 4.9223 12 6 -1.3240 4.9853 3.7889 13 6 -0.9668 4.3702 2.5934 14 16 -1.9348 4.6230 1.1430 15 6 -3.3040 5.4889 1.8361 16 1 -3.3744 5.6201 2.9058 17 6 -4.2921 6.0021 1.0073 18 7 -4.2061 5.8424 -0.2957 19 14 -5.7440 6.9194 1.7421 20 1 -5.2532 8.1039 2.4914 21 1 -6.6510 7.3638 0.6535 22 1 -6.4816 6.0204 2.6656 23 6 3.5648 1.4443 -0.1257 24 6 4.1891 2.4081 -1.1369 25 6 4.1672 0.9047 -1.4245 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 2.1813 1.9626 2.0537 32 1 1.8070 2.7267 3.6798 33 1 1.1463 3.8236 5.7750 34 1 -0.8451 5.2658 5.8481 35 1 -2.1973 5.6195 3.8296 36 1 -4.8968 6.2008 -0.8749 37 1 4.1129 1.2596 0.7981 38 1 3.5135 3.0404 -1.7129 39 1 5.1481 2.8570 -0.8784 40 1 5.1118 0.3652 -1.3550 41 1 3.4772 0.5480 -2.1891 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855860684.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:52:30 Heat of formation + Delta-G solvation = -12.837052 kcal Electronic energy + Delta-G solvation = -22430.104200 eV Core-core repulsion = 19207.773740 eV Total energy + Delta-G solvation = -3222.330459 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.16216 -39.36349 -38.34583 -35.59315 -34.76205 -33.50091 -31.78432 -31.67603 -27.90292 -27.81263 -24.65460 -23.51879 -23.31233 -22.63601 -21.53419 -21.39505 -19.80347 -18.64137 -17.67727 -17.30427 -17.03258 -16.35492 -16.00341 -15.69217 -15.55894 -15.27664 -15.04209 -14.80149 -14.62506 -14.32425 -13.78254 -13.48188 -13.32576 -13.28394 -12.97439 -12.89229 -12.55669 -12.45502 -12.38649 -12.09375 -11.97482 -11.75129 -11.47215 -11.40845 -11.35797 -11.12948 -10.95358 -10.40162 -9.99354 -9.87731 -9.71181 -8.45353 -8.44603 -6.23378 0.06890 0.55204 1.26133 1.37149 1.43174 1.65877 2.08362 2.17546 2.29355 2.87981 2.95106 3.07318 3.26000 3.65244 3.96261 4.00047 4.03894 4.16971 4.18882 4.27786 4.32886 4.36151 4.50982 4.63401 4.65595 4.82054 4.83897 4.88693 4.98956 5.03108 5.09276 5.12442 5.15237 5.28243 5.32375 5.37422 5.44315 5.46699 5.58464 5.68386 5.71351 6.10355 6.17128 6.72815 6.96044 7.46758 8.60330 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.016301 B = 0.004257 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.245620 B = 6575.371309 C = 7592.271396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.118 4.118 3 C 0.171 3.829 4 H 0.058 0.942 5 N -0.706 5.706 6 C 0.548 3.452 7 O -0.552 6.552 8 C -0.181 4.181 9 C -0.054 4.054 10 C -0.158 4.158 11 C -0.072 4.072 12 C -0.176 4.176 13 C -0.074 4.074 14 S 0.066 5.934 15 C -0.604 4.604 16 H 0.093 0.907 17 C 0.025 3.975 18 N -0.905 5.905 19 Si 0.992 3.008 20 H -0.260 1.260 21 H -0.274 1.274 22 H -0.262 1.262 23 C -0.160 4.160 24 C -0.191 4.191 25 C -0.156 4.156 26 H 0.065 0.935 27 H 0.028 0.972 28 H 0.030 0.970 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.411 0.589 32 H 0.162 0.838 33 H 0.166 0.834 34 H 0.148 0.852 35 H 0.117 0.883 36 H 0.275 0.725 37 H 0.131 0.869 38 H 0.072 0.928 39 H 0.108 0.892 40 H 0.119 0.881 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.778 -10.525 7.227 21.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.156 4.156 3 C 0.067 3.933 4 H 0.076 0.924 5 N -0.359 5.359 6 C 0.337 3.663 7 O -0.432 6.432 8 C -0.195 4.195 9 C -0.074 4.074 10 C -0.181 4.181 11 C -0.092 4.092 12 C -0.201 4.201 13 C -0.192 4.192 14 S 0.325 5.675 15 C -0.751 4.751 16 H 0.110 0.890 17 C -0.181 4.181 18 N -0.540 5.540 19 Si 0.813 3.187 20 H -0.184 1.184 21 H -0.198 1.198 22 H -0.187 1.187 23 C -0.178 4.178 24 C -0.228 4.228 25 C -0.193 4.193 26 H 0.084 0.916 27 H 0.047 0.953 28 H 0.049 0.951 29 H 0.106 0.894 30 H 0.103 0.897 31 H 0.249 0.751 32 H 0.179 0.821 33 H 0.183 0.817 34 H 0.166 0.834 35 H 0.135 0.865 36 H 0.085 0.915 37 H 0.149 0.851 38 H 0.090 0.910 39 H 0.126 0.874 40 H 0.137 0.863 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 17.196 -10.619 4.897 20.796 hybrid contribution -1.466 1.255 1.395 2.381 sum 15.731 -9.364 6.292 19.358 Atomic orbital electron populations 1.21686 0.97367 1.00918 1.00396 1.21832 0.94385 0.95459 1.03940 1.20562 0.92891 0.93245 0.86641 0.92410 1.45606 1.27838 1.48909 1.13560 1.18417 0.81013 0.78833 0.88024 1.90783 1.52855 1.63020 1.36544 1.19560 0.99392 1.04980 0.95538 1.21455 0.97853 0.97382 0.90731 1.21324 0.98237 0.99569 0.98936 1.21532 0.94127 0.96403 0.97185 1.21434 1.02458 1.03138 0.93078 1.23014 0.98149 0.97891 1.00195 1.84907 1.14883 1.61601 1.06098 1.24229 1.10693 1.42872 0.97298 0.88961 1.26131 1.01263 0.95807 0.94852 1.70126 1.35503 1.43860 1.04527 0.85106 0.76754 0.78641 0.78225 1.18447 1.19827 1.18663 1.22464 0.92941 1.06170 0.96247 1.23065 1.02802 0.93533 1.03412 1.23023 1.03122 0.95674 0.97479 0.91592 0.95273 0.95096 0.89403 0.89664 0.75120 0.82111 0.81688 0.83396 0.86545 0.91549 0.85129 0.90979 0.87367 0.86262 0.88925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.28 9.09 71.98 0.65 -3.63 16 2 C -0.12 -2.52 5.55 30.59 0.17 -2.35 16 3 C 0.17 4.19 2.42 44.99 0.11 4.30 16 4 H 0.06 1.90 6.99 -2.39 -0.02 1.89 16 5 N -0.71 -18.76 4.67 -445.79 -2.08 -20.84 16 6 C 0.55 21.29 6.48 86.66 0.56 21.85 16 7 O -0.55 -27.18 12.56 -4.06 -0.05 -27.23 16 8 C -0.18 -7.03 5.89 -19.95 -0.12 -7.15 16 9 C -0.05 -1.46 9.53 22.51 0.21 -1.25 16 10 C -0.16 -3.89 10.02 22.27 0.22 -3.67 16 11 C -0.07 -2.19 10.03 22.29 0.22 -1.96 16 12 C -0.18 -7.43 9.20 22.40 0.21 -7.22 16 13 C -0.07 -3.54 6.14 23.04 0.14 -3.40 16 14 S 0.07 3.89 18.56 -56.49 -1.05 2.84 16 15 C -0.60 -35.90 8.98 67.96 0.61 -35.29 16 16 H 0.09 5.17 5.03 -2.91 -0.01 5.16 16 17 C 0.03 1.46 5.49 84.87 0.47 1.93 16 18 N -0.91 -56.23 13.22 21.65 0.29 -55.94 16 19 Si 0.99 44.53 29.55 68.60 2.03 46.55 16 20 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 21 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 22 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 23 C -0.16 -2.72 5.34 -10.79 -0.06 -2.77 16 24 C -0.19 -3.53 10.18 30.62 0.31 -3.22 16 25 C -0.16 -2.25 9.74 30.62 0.30 -1.96 16 26 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.03 1.00 6.71 -2.39 -0.02 0.98 16 28 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.09 1.56 7.47 -2.39 -0.02 1.54 16 30 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.41 7.63 6.77 -92.71 -0.63 7.00 16 32 H 0.16 2.69 6.40 -2.91 -0.02 2.68 16 33 H 0.17 2.51 8.06 -2.91 -0.02 2.49 16 34 H 0.15 3.46 8.06 -2.91 -0.02 3.43 16 35 H 0.12 5.34 5.09 -2.91 -0.01 5.32 16 36 H 0.28 15.82 8.31 -92.71 -0.77 15.05 16 37 H 0.13 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.07 1.69 8.08 -2.39 -0.02 1.68 16 39 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.12 1.19 8.14 -2.38 -0.02 1.17 16 41 H 0.09 1.43 7.90 -2.39 -0.02 1.41 16 Total: -1.00 -78.92 347.68 3.57 -75.35 By element: Atomic # 1 Polarization: 24.63 SS G_CDS: 0.42 Total: 25.05 kcal Atomic # 6 Polarization: -49.79 SS G_CDS: 4.01 Total: -45.78 kcal Atomic # 7 Polarization: -74.98 SS G_CDS: -1.79 Total: -76.78 kcal Atomic # 8 Polarization: -27.18 SS G_CDS: -0.05 Total: -27.23 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.55 kcal Atomic # 16 Polarization: 3.89 SS G_CDS: -1.05 Total: 2.84 kcal Total: -78.92 3.57 -75.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855860684.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.512 kcal (2) G-P(sol) polarization free energy of solvation -78.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds