Wall clock time and date at job start Tue Mar 31 2020 08:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35650 * 119.99969 * 2 1 4 4 C 1.41481 * 119.99872 * 179.97438 * 3 2 1 5 5 O 1.21783 * 119.99950 * 359.97438 * 4 3 2 6 6 N 1.34771 * 120.00119 * 179.97438 * 4 3 2 7 7 C 1.46496 * 120.00157 * 179.97438 * 6 4 3 8 8 C 1.50695 * 109.47390 * 270.00017 * 7 6 4 9 9 H 1.08001 * 120.00425 * 0.02562 * 8 7 6 10 10 C 1.37885 * 119.99997 * 179.97438 * 8 7 6 11 11 N 1.31507 * 119.99974 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99547 * 180.02562 * 10 8 7 13 13 H 1.48492 * 109.47560 * 359.97438 * 12 10 8 14 14 H 1.48504 * 109.46717 * 120.00344 * 12 10 8 15 15 H 1.48502 * 109.46830 * 239.99808 * 12 10 8 16 16 C 1.46506 * 120.00084 * 0.02562 * 6 4 3 17 17 C 1.53002 * 109.47035 * 270.00167 * 16 6 4 18 18 C 1.52997 * 117.49591 * 243.74831 * 17 16 6 19 19 C 1.52999 * 117.49919 * 175.08784 * 17 16 6 20 20 C 1.41585 * 119.99812 * 179.97438 * 2 1 3 21 21 C 1.37041 * 125.47173 * 294.99864 * 20 2 1 22 22 C 1.37438 * 113.22086 * 179.97438 * 21 20 2 23 23 C 1.33859 * 115.12587 * 0.02562 * 22 21 20 24 24 S 1.70609 * 111.01626 * 359.76320 * 23 22 21 25 25 H 1.08997 * 109.47432 * 89.99803 * 1 2 3 26 26 H 1.08999 * 109.47515 * 210.00048 * 1 2 3 27 27 H 1.08997 * 109.47218 * 330.00249 * 1 2 3 28 28 H 1.08002 * 120.00483 * 0.02562 * 3 2 1 29 29 H 1.09001 * 109.47057 * 30.00532 * 7 6 4 30 30 H 1.08999 * 109.47333 * 150.00092 * 7 6 4 31 31 H 0.96998 * 119.99696 * 179.97438 * 11 10 8 32 32 H 1.09004 * 109.47073 * 29.99849 * 16 6 4 33 33 H 1.09000 * 109.47212 * 149.99932 * 16 6 4 34 34 H 1.09006 * 115.54840 * 29.41371 * 17 16 6 35 35 H 1.08997 * 117.49952 * 359.97438 * 18 17 16 36 36 H 1.09002 * 117.50050 * 145.02213 * 18 17 16 37 37 H 1.08998 * 117.49742 * 214.97977 * 19 17 16 38 38 H 1.09000 * 117.49487 * 359.97438 * 19 17 16 39 39 H 1.08003 * 123.39514 * 359.94522 * 21 20 2 40 40 H 1.07991 * 122.43853 * 180.02562 * 22 21 20 41 41 H 1.08000 * 124.49402 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1852 1.1748 0.0000 4 6 3.6001 1.1747 0.0005 5 8 4.2089 0.1201 0.0015 6 7 4.2740 2.3419 0.0000 7 6 5.7389 2.3419 0.0012 8 6 6.2402 2.3431 1.4223 9 1 5.5378 2.3434 2.2427 10 6 7.5957 2.3428 1.6752 11 7 8.4509 2.3419 0.6763 12 14 8.2169 2.3436 3.4369 13 1 7.0613 2.3452 4.3694 14 1 9.0414 1.1310 3.6715 15 1 9.0422 3.5560 3.6701 16 6 3.5415 3.6107 -0.0005 17 6 3.2865 4.0517 -1.4433 18 6 3.9399 5.3541 -1.9098 19 6 2.4308 5.3015 -1.6592 20 6 2.2149 -1.2262 0.0005 21 6 2.2040 -2.1503 1.0125 22 6 2.9818 -3.2522 0.7484 23 6 3.6086 -3.2353 -0.4342 24 16 3.2442 -1.8108 -1.2995 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6453 2.1101 0.0004 29 1 6.1026 1.4514 -0.5117 30 1 6.1027 3.2314 -0.5132 31 1 9.4045 2.3420 0.8543 32 1 2.5890 3.4806 0.5133 33 1 4.1306 4.3705 0.5130 34 1 3.1936 3.2461 -2.1717 35 1 4.5511 5.8969 -1.1888 36 1 4.2766 5.4055 -2.9452 37 1 1.7752 5.3183 -2.5298 38 1 2.0491 5.8093 -0.7734 39 1 1.6413 -2.0251 1.9258 40 1 3.0802 -4.0720 1.4444 41 1 4.2556 -4.0213 -0.7949 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000857145278.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:51:20 Heat of formation + Delta-G solvation = 51.293609 kcal Electronic energy + Delta-G solvation = -22841.049346 eV Core-core repulsion = 19621.499800 eV Total energy + Delta-G solvation = -3219.549545 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.54812 -37.70589 -36.96005 -34.82231 -34.07210 -32.49972 -28.96625 -28.25941 -27.30337 -25.86191 -24.26460 -22.83186 -22.16801 -20.77942 -20.30922 -18.92363 -18.36910 -16.81302 -16.45859 -16.10661 -15.41000 -15.07274 -14.61514 -14.48242 -14.05547 -13.68563 -13.55511 -13.16664 -13.03096 -12.34493 -12.31139 -12.24839 -12.20771 -12.01529 -11.71221 -11.58386 -11.37471 -11.32919 -11.16610 -10.84018 -10.59796 -10.41723 -10.25095 -10.07858 -9.70555 -9.54626 -9.16578 -8.73075 -8.38672 -8.09465 -7.57456 -7.29732 -5.99292 -4.03166 0.94606 1.76190 2.39579 2.62242 3.16460 3.31860 3.39517 3.43878 3.89969 4.09278 4.21065 4.49808 4.94596 5.02556 5.08296 5.12364 5.27700 5.34857 5.42652 5.45313 5.52182 5.65494 5.68267 5.75418 5.84867 5.86655 5.90079 5.95179 6.07061 6.09867 6.29002 6.31551 6.44298 6.50338 6.56578 6.80542 6.91884 7.21426 7.53571 7.65056 7.98398 8.30649 8.53145 8.97433 9.21146 9.61695 11.08535 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.009855 B = 0.006113 C = 0.004293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2840.462173 B = 4579.194023 C = 6519.949114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.013 3.987 3 C -0.198 4.198 4 C 0.525 3.475 5 O -0.527 6.527 6 N -0.589 5.589 7 C 0.249 3.751 8 C -0.521 4.521 9 H 0.056 0.944 10 C 0.061 3.939 11 N -0.895 5.895 12 Si 0.895 3.105 13 H -0.274 1.274 14 H -0.283 1.283 15 H -0.284 1.284 16 C 0.141 3.859 17 C -0.165 4.165 18 C -0.175 4.175 19 C -0.182 4.182 20 C -0.159 4.159 21 C -0.128 4.128 22 C -0.144 4.144 23 C -0.271 4.271 24 S 0.252 5.748 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.130 0.870 29 H 0.043 0.957 30 H 0.031 0.969 31 H 0.261 0.739 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.132 0.868 40 H 0.127 0.873 41 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.710 -1.737 -4.841 17.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.008 3.992 3 C -0.222 4.222 4 C 0.315 3.685 5 O -0.408 6.408 6 N -0.319 5.319 7 C 0.130 3.870 8 C -0.560 4.560 9 H 0.074 0.926 10 C -0.141 4.141 11 N -0.535 5.535 12 Si 0.723 3.277 13 H -0.199 1.199 14 H -0.209 1.209 15 H -0.210 1.210 16 C 0.017 3.983 17 C -0.184 4.184 18 C -0.212 4.212 19 C -0.220 4.220 20 C -0.277 4.277 21 C -0.158 4.158 22 C -0.177 4.177 23 C -0.409 4.409 24 S 0.525 5.475 25 H 0.095 0.905 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.147 0.853 29 H 0.061 0.939 30 H 0.049 0.951 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.100 0.900 34 H 0.120 0.880 35 H 0.115 0.885 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.111 0.889 39 H 0.149 0.851 40 H 0.145 0.855 41 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -15.671 -1.787 -6.328 16.995 hybrid contribution 0.342 -0.381 2.545 2.596 sum -15.330 -2.168 -3.783 15.938 Atomic orbital electron populations 1.20918 0.90388 1.03145 1.02664 1.19325 0.95050 0.90674 0.94103 1.22442 0.95581 0.97986 1.06165 1.17037 0.87880 0.84515 0.79040 1.90960 1.70943 1.29403 1.49457 1.48166 1.09350 1.03843 1.70570 1.19216 0.72347 0.98278 0.97189 1.21485 0.91625 1.50440 0.92419 0.92564 1.24914 0.96713 0.95253 0.97196 1.69942 1.02105 1.50867 1.30547 0.86495 0.78789 0.77526 0.84932 1.19855 1.20943 1.21024 1.21038 0.96625 0.87681 0.92985 1.22919 1.04424 0.91784 0.99317 1.23003 0.94862 1.01010 1.02284 1.22928 0.93950 1.02133 1.02973 1.22161 1.05412 0.99018 1.01128 1.20429 1.02892 0.93518 0.99004 1.19677 1.00484 0.99983 0.97515 1.25046 1.09018 1.04577 1.02229 1.82628 1.40284 1.07931 1.16653 0.90545 0.91056 0.90973 0.85271 0.93914 0.95138 0.92900 0.91162 0.89982 0.87999 0.88482 0.89212 0.89224 0.88891 0.85052 0.85524 0.82900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.14 10.02 36.01 0.36 -0.78 16 2 C 0.01 0.18 5.71 -104.27 -0.60 -0.41 16 3 C -0.20 -3.19 8.76 -39.27 -0.34 -3.53 16 4 C 0.52 11.04 7.39 -15.03 -0.11 10.93 16 5 O -0.53 -12.82 11.29 5.11 0.06 -12.76 16 6 N -0.59 -12.59 2.46 -178.52 -0.44 -13.03 16 7 C 0.25 6.57 5.16 -5.20 -0.03 6.54 16 8 C -0.52 -14.99 9.39 -34.44 -0.32 -15.32 16 9 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 10 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 11 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16 12 Si 0.89 22.34 29.54 -169.99 -5.02 17.32 16 13 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 14 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 15 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 16 C 0.14 2.34 5.37 -4.04 -0.02 2.32 16 17 C -0.16 -2.35 6.01 -90.62 -0.54 -2.89 16 18 C -0.17 -2.32 10.18 -26.69 -0.27 -2.59 16 19 C -0.18 -2.04 10.25 -26.69 -0.27 -2.31 16 20 C -0.16 -2.64 3.85 -38.74 -0.15 -2.79 16 21 C -0.13 -2.05 10.25 -40.31 -0.41 -2.46 16 22 C -0.14 -2.27 10.15 -41.41 -0.42 -2.69 16 23 C -0.27 -4.33 10.92 29.19 0.32 -4.01 16 24 S 0.25 4.24 20.30 -107.50 -2.18 2.06 16 25 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 27 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 28 H 0.13 1.70 6.08 -52.49 -0.32 1.38 16 29 H 0.04 1.27 7.42 -51.93 -0.39 0.89 16 30 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 31 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 32 H 0.07 0.99 6.08 -51.93 -0.32 0.68 16 33 H 0.08 1.43 7.81 -51.93 -0.41 1.03 16 34 H 0.10 1.54 8.14 -51.93 -0.42 1.11 16 35 H 0.10 1.33 8.03 -51.93 -0.42 0.92 16 36 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 37 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.13 1.84 8.06 -52.48 -0.42 1.42 16 40 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 41 H 0.15 2.09 8.06 -52.49 -0.42 1.67 16 LS Contribution 357.72 15.07 5.39 5.39 Total: -1.00 -33.28 357.72 -10.40 -43.68 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -6.03 Total: 1.89 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: -2.91 Total: -18.31 kcal Atomic # 7 Polarization: -39.56 SS G_CDS: 0.30 Total: -39.27 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: 0.06 Total: -12.76 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Atomic # 16 Polarization: 4.24 SS G_CDS: -2.18 Total: 2.06 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.28 -10.40 -43.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857145278.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.972 kcal (2) G-P(sol) polarization free energy of solvation -33.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds