Wall clock time and date at job start Tue Mar 31 2020 08:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35650 * 119.99969 * 2 1 4 4 C 1.41481 * 119.99872 * 179.97438 * 3 2 1 5 5 O 1.21783 * 119.99950 * 359.97438 * 4 3 2 6 6 N 1.34771 * 120.00119 * 179.97438 * 4 3 2 7 7 C 1.46496 * 120.00157 * 179.97438 * 6 4 3 8 8 C 1.50695 * 109.47390 * 270.00017 * 7 6 4 9 9 H 1.08001 * 120.00425 * 0.02562 * 8 7 6 10 10 C 1.37885 * 119.99997 * 179.97438 * 8 7 6 11 11 N 1.31507 * 119.99974 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99547 * 180.02562 * 10 8 7 13 13 H 1.48492 * 109.47560 * 359.97438 * 12 10 8 14 14 H 1.48504 * 109.46717 * 120.00344 * 12 10 8 15 15 H 1.48502 * 109.46830 * 239.99808 * 12 10 8 16 16 C 1.46506 * 120.00084 * 0.02562 * 6 4 3 17 17 C 1.53002 * 109.47035 * 270.00167 * 16 6 4 18 18 C 1.52997 * 117.49591 * 243.74831 * 17 16 6 19 19 C 1.52999 * 117.49919 * 175.08784 * 17 16 6 20 20 C 1.41585 * 119.99812 * 179.97438 * 2 1 3 21 21 C 1.37041 * 125.47173 * 294.99864 * 20 2 1 22 22 C 1.37438 * 113.22086 * 179.97438 * 21 20 2 23 23 C 1.33859 * 115.12587 * 0.02562 * 22 21 20 24 24 S 1.70609 * 111.01626 * 359.76320 * 23 22 21 25 25 H 1.08997 * 109.47432 * 89.99803 * 1 2 3 26 26 H 1.08999 * 109.47515 * 210.00048 * 1 2 3 27 27 H 1.08997 * 109.47218 * 330.00249 * 1 2 3 28 28 H 1.08002 * 120.00483 * 0.02562 * 3 2 1 29 29 H 1.09001 * 109.47057 * 30.00532 * 7 6 4 30 30 H 1.08999 * 109.47333 * 150.00092 * 7 6 4 31 31 H 0.96998 * 119.99696 * 179.97438 * 11 10 8 32 32 H 1.09004 * 109.47073 * 29.99849 * 16 6 4 33 33 H 1.09000 * 109.47212 * 149.99932 * 16 6 4 34 34 H 1.09006 * 115.54840 * 29.41371 * 17 16 6 35 35 H 1.08997 * 117.49952 * 359.97438 * 18 17 16 36 36 H 1.09002 * 117.50050 * 145.02213 * 18 17 16 37 37 H 1.08998 * 117.49742 * 214.97977 * 19 17 16 38 38 H 1.09000 * 117.49487 * 359.97438 * 19 17 16 39 39 H 1.08003 * 123.39514 * 359.94522 * 21 20 2 40 40 H 1.07991 * 122.43853 * 180.02562 * 22 21 20 41 41 H 1.08000 * 124.49402 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1852 1.1748 0.0000 4 6 3.6001 1.1747 0.0005 5 8 4.2089 0.1201 0.0015 6 7 4.2740 2.3419 0.0000 7 6 5.7389 2.3419 0.0012 8 6 6.2402 2.3431 1.4223 9 1 5.5378 2.3434 2.2427 10 6 7.5957 2.3428 1.6752 11 7 8.4509 2.3419 0.6763 12 14 8.2169 2.3436 3.4369 13 1 7.0613 2.3452 4.3694 14 1 9.0414 1.1310 3.6715 15 1 9.0422 3.5560 3.6701 16 6 3.5415 3.6107 -0.0005 17 6 3.2865 4.0517 -1.4433 18 6 3.9399 5.3541 -1.9098 19 6 2.4308 5.3015 -1.6592 20 6 2.2149 -1.2262 0.0005 21 6 2.2040 -2.1503 1.0125 22 6 2.9818 -3.2522 0.7484 23 6 3.6086 -3.2353 -0.4342 24 16 3.2442 -1.8108 -1.2995 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6453 2.1101 0.0004 29 1 6.1026 1.4514 -0.5117 30 1 6.1027 3.2314 -0.5132 31 1 9.4045 2.3420 0.8543 32 1 2.5890 3.4806 0.5133 33 1 4.1306 4.3705 0.5130 34 1 3.1936 3.2461 -2.1717 35 1 4.5511 5.8969 -1.1888 36 1 4.2766 5.4055 -2.9452 37 1 1.7752 5.3183 -2.5298 38 1 2.0491 5.8093 -0.7734 39 1 1.6413 -2.0251 1.9258 40 1 3.0802 -4.0720 1.4444 41 1 4.2556 -4.0213 -0.7949 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000857145278.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:51:20 Heat of formation + Delta-G solvation = 33.449904 kcal Electronic energy + Delta-G solvation = -22841.823107 eV Core-core repulsion = 19621.499800 eV Total energy + Delta-G solvation = -3220.323306 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.05771 -38.93483 -38.19020 -36.26240 -35.54162 -34.58431 -30.62591 -29.44787 -28.68647 -27.43695 -25.64483 -24.63222 -23.15718 -22.08247 -21.55291 -20.26630 -19.70291 -18.62316 -18.21303 -17.64795 -16.83637 -16.43705 -16.20319 -15.95322 -15.48965 -14.86525 -14.81721 -14.51874 -14.31864 -14.06159 -13.63154 -13.55077 -13.42089 -13.27953 -13.20394 -12.93327 -12.84535 -12.66841 -12.54705 -12.53010 -12.27837 -12.22041 -11.68767 -11.67093 -11.25383 -10.86324 -10.64698 -10.56739 -10.07527 -9.51735 -9.08560 -8.72840 -8.21003 -6.35996 -0.31805 0.52664 1.14231 1.32864 1.35233 1.36446 1.47205 1.92671 2.31277 2.53827 2.64751 3.00252 3.07254 3.80819 3.92679 4.00281 4.06517 4.20586 4.26751 4.39771 4.47949 4.54783 4.67385 4.68998 4.73581 4.84511 4.86041 4.89329 4.97567 5.08177 5.12672 5.14858 5.26714 5.30966 5.33676 5.35235 5.50803 5.57520 5.60818 5.73593 5.94113 6.10055 6.72973 6.91118 7.30384 7.61623 8.85028 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.009855 B = 0.006113 C = 0.004293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2840.462173 B = 4579.194023 C = 6519.949114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.034 3.966 3 C -0.220 4.220 4 C 0.516 3.484 5 O -0.573 6.573 6 N -0.598 5.598 7 C 0.271 3.729 8 C -0.536 4.536 9 H 0.049 0.951 10 C 0.008 3.992 11 N -0.929 5.929 12 Si 0.964 3.036 13 H -0.268 1.268 14 H -0.282 1.282 15 H -0.268 1.268 16 C 0.141 3.859 17 C -0.182 4.182 18 C -0.192 4.192 19 C -0.141 4.141 20 C -0.174 4.174 21 C -0.137 4.137 22 C -0.152 4.152 23 C -0.281 4.281 24 S 0.212 5.788 25 H 0.097 0.903 26 H 0.081 0.919 27 H 0.096 0.904 28 H 0.163 0.837 29 H -0.005 1.005 30 H 0.015 0.985 31 H 0.266 0.734 32 H 0.102 0.898 33 H 0.067 0.933 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.153 0.847 40 H 0.150 0.850 41 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.520 -1.024 -3.557 19.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.030 3.970 3 C -0.244 4.244 4 C 0.309 3.691 5 O -0.456 6.456 6 N -0.328 5.328 7 C 0.149 3.851 8 C -0.575 4.575 9 H 0.067 0.933 10 C -0.191 4.191 11 N -0.569 5.569 12 Si 0.788 3.212 13 H -0.192 1.192 14 H -0.208 1.208 15 H -0.193 1.193 16 C 0.018 3.982 17 C -0.201 4.201 18 C -0.229 4.229 19 C -0.178 4.178 20 C -0.292 4.292 21 C -0.167 4.167 22 C -0.184 4.184 23 C -0.418 4.418 24 S 0.485 5.515 25 H 0.115 0.885 26 H 0.100 0.900 27 H 0.115 0.885 28 H 0.181 0.819 29 H 0.014 0.986 30 H 0.033 0.967 31 H 0.075 0.925 32 H 0.120 0.880 33 H 0.085 0.915 34 H 0.109 0.891 35 H 0.105 0.895 36 H 0.111 0.889 37 H 0.130 0.870 38 H 0.129 0.871 39 H 0.170 0.830 40 H 0.168 0.832 41 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -18.522 -1.043 -5.053 19.227 hybrid contribution 1.220 -0.692 2.108 2.532 sum -17.302 -1.734 -2.945 17.636 Atomic orbital electron populations 1.21051 0.86351 1.04910 1.04411 1.19891 0.97547 0.89161 0.90382 1.22316 0.92527 1.00107 1.09410 1.17858 0.89928 0.83526 0.77805 1.90937 1.72268 1.30837 1.51598 1.48118 1.07439 1.06172 1.71056 1.18558 0.75961 0.95096 0.95453 1.21726 0.92008 1.50599 0.93119 0.93270 1.25818 0.96909 0.94629 1.01703 1.70062 1.02542 1.51419 1.32856 0.85429 0.78297 0.77973 0.79488 1.19248 1.20835 1.19300 1.21237 0.96945 0.85078 0.94913 1.22709 1.07490 0.92447 0.97493 1.23066 0.97144 1.00541 1.02197 1.23040 0.92370 0.98086 1.04297 1.22549 1.05345 1.00144 1.01174 1.20784 1.03051 0.93353 0.99545 1.20045 0.99981 1.00673 0.97699 1.25320 1.09515 1.04518 1.02490 1.82727 1.41376 1.09335 1.18073 0.88489 0.90000 0.88494 0.81923 0.98649 0.96696 0.92534 0.88036 0.91490 0.89111 0.89528 0.88947 0.86959 0.87056 0.82953 0.83200 0.81281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.76 10.02 71.24 0.71 -1.04 16 2 C 0.03 0.94 5.71 -19.64 -0.11 0.83 16 3 C -0.22 -6.77 8.76 22.47 0.20 -6.57 16 4 C 0.52 22.17 7.39 85.04 0.63 22.80 16 5 O -0.57 -29.09 11.29 -4.61 -0.05 -29.14 16 6 N -0.60 -26.40 2.46 -836.90 -2.06 -28.46 16 7 C 0.27 15.15 5.16 85.63 0.44 15.59 16 8 C -0.54 -31.93 9.39 25.60 0.24 -31.69 16 9 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 10 C 0.01 0.48 5.46 84.66 0.46 0.94 16 11 N -0.93 -57.74 13.29 21.45 0.28 -57.45 16 12 Si 0.96 46.36 29.54 68.60 2.03 48.39 16 13 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 14 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 15 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 16 C 0.14 4.63 5.37 86.38 0.46 5.09 16 17 C -0.18 -5.04 6.01 -10.79 -0.06 -5.10 16 18 C -0.19 -4.99 10.18 30.62 0.31 -4.68 16 19 C -0.14 -2.71 10.25 30.62 0.31 -2.40 16 20 C -0.17 -5.66 3.85 22.81 0.09 -5.58 16 21 C -0.14 -4.22 10.25 21.80 0.22 -4.00 16 22 C -0.15 -4.64 10.15 21.08 0.21 -4.43 16 23 C -0.28 -9.03 10.92 66.82 0.73 -8.30 16 24 S 0.21 7.36 20.30 -56.49 -1.15 6.21 16 25 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.08 1.19 8.10 -2.39 -0.02 1.17 16 27 H 0.10 1.14 8.08 -2.39 -0.02 1.12 16 28 H 0.16 3.75 6.08 -2.91 -0.02 3.73 16 29 H 0.00 -0.30 7.42 -2.39 -0.02 -0.31 16 30 H 0.02 0.86 8.07 -2.39 -0.02 0.85 16 31 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 32 H 0.10 2.64 6.08 -2.38 -0.01 2.62 16 33 H 0.07 2.37 7.81 -2.39 -0.02 2.35 16 34 H 0.09 2.74 8.14 -2.38 -0.02 2.72 16 35 H 0.09 2.41 8.03 -2.39 -0.02 2.39 16 36 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 37 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.15 3.93 8.06 -2.91 -0.02 3.91 16 40 H 0.15 3.76 8.06 -2.92 -0.02 3.74 16 41 H 0.17 4.65 8.06 -2.91 -0.02 4.63 16 Total: -1.00 -76.49 357.72 4.92 -71.57 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: 1.01 Total: 17.44 kcal Atomic # 6 Polarization: -33.40 SS G_CDS: 4.85 Total: -28.55 kcal Atomic # 7 Polarization: -84.14 SS G_CDS: -1.77 Total: -85.91 kcal Atomic # 8 Polarization: -29.09 SS G_CDS: -0.05 Total: -29.14 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Atomic # 16 Polarization: 7.36 SS G_CDS: -1.15 Total: 6.21 kcal Total: -76.49 4.92 -71.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857145278.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.015 kcal (2) G-P(sol) polarization free energy of solvation -76.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds