Wall clock time and date at job start Tue Mar 31 2020 08:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35643 * 120.00178 * 2 1 4 4 C 1.41481 * 120.00045 * 352.88463 * 3 2 1 5 5 O 1.21785 * 119.99764 * 353.09479 * 4 3 2 6 6 N 1.34778 * 119.99997 * 172.81337 * 4 3 2 7 7 C 1.46922 * 120.63053 * 356.05662 * 6 4 3 8 8 C 1.53623 * 108.54140 * 126.36708 * 7 6 4 9 9 C 1.53043 * 109.24203 * 54.85759 * 8 7 6 10 10 C 1.53037 * 109.53430 * 298.50718 * 9 8 7 11 11 H 1.08998 * 109.50198 * 301.41074 * 10 9 8 12 12 C 1.50700 * 109.49670 * 181.31627 * 10 9 8 13 13 H 1.08001 * 119.99919 * 0.16485 * 12 10 9 14 14 C 1.37879 * 120.00438 * 180.16339 * 12 10 9 15 15 N 1.31515 * 119.99806 * 0.02562 * 14 12 10 16 16 Si 1.86798 * 120.00297 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.46974 * 60.00075 * 16 14 12 18 18 H 1.48500 * 109.47217 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.46983 * 300.00146 * 16 14 12 20 20 C 1.46926 * 120.62653 * 176.33715 * 6 4 3 21 21 C 1.41579 * 119.99698 * 180.02562 * 2 1 3 22 22 C 1.37042 * 125.47687 * 294.71398 * 21 2 1 23 23 C 1.37444 * 113.22179 * 179.86541 * 22 21 2 24 24 C 1.33861 * 115.12824 * 0.43056 * 23 22 21 25 25 S 1.70612 * 111.01365 * 359.75865 * 24 23 22 26 26 H 1.08996 * 109.47156 * 84.29599 * 1 2 3 27 27 H 1.09001 * 109.47437 * 204.29854 * 1 2 3 28 28 H 1.09004 * 109.46721 * 324.29390 * 1 2 3 29 29 H 1.08002 * 120.00304 * 172.88726 * 3 2 1 30 30 H 1.08997 * 109.58504 * 246.20086 * 7 6 4 31 31 H 1.09001 * 109.58758 * 6.62551 * 7 6 4 32 32 H 1.08999 * 109.63544 * 294.86517 * 8 7 6 33 33 H 1.08997 * 109.45741 * 174.73929 * 8 7 6 34 34 H 1.09004 * 109.45855 * 178.49192 * 9 8 7 35 35 H 1.09000 * 109.44977 * 58.52298 * 9 8 7 36 36 H 0.96999 * 120.00217 * 180.02562 * 15 14 12 37 37 H 1.09002 * 109.59206 * 353.36736 * 20 6 4 38 38 H 1.08993 * 109.59058 * 113.80191 * 20 6 4 39 39 H 1.07994 * 123.39286 * 0.04175 * 22 21 2 40 40 H 1.08002 * 122.43441 * 180.18988 * 23 22 21 41 41 H 1.07996 * 124.49648 * 179.76146 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1853 1.1747 0.0000 4 6 1.4861 2.3952 -0.1518 5 8 0.2955 2.3872 -0.4078 6 7 2.1364 3.5669 -0.0074 7 6 3.5501 3.5941 0.3918 8 6 4.3317 4.4279 -0.6348 9 6 3.6869 5.8104 -0.7576 10 6 2.2473 5.6613 -1.2546 11 1 2.2459 5.1511 -2.2179 12 6 1.6237 7.0248 -1.4061 13 1 2.1975 7.9098 -1.1739 14 6 0.3206 7.1426 -1.8411 15 7 -0.3783 6.0649 -2.1234 16 14 -0.4521 8.8328 -2.0295 17 1 0.3275 9.6266 -3.0130 18 1 -1.8502 8.6873 -2.5086 19 1 -0.4477 9.5281 -0.7174 20 6 1.4434 4.8413 -0.2405 21 6 2.2149 -1.2262 -0.0005 22 6 2.2084 -2.1487 1.0128 23 6 2.9832 -3.2521 0.7461 24 6 3.6101 -3.2341 -0.4365 25 16 3.2496 -1.8065 -1.2984 26 1 -0.3633 0.1021 -1.0225 27 1 -0.3634 -0.9366 0.4229 28 1 -0.3633 0.8345 0.5998 29 1 3.2591 1.1783 0.1158 30 1 3.6422 4.0456 1.3796 31 1 3.9431 2.5776 0.4144 32 1 4.3107 3.9293 -1.6038 33 1 5.3645 4.5363 -0.3037 34 1 4.2548 6.4143 -1.4654 35 1 3.6859 6.2983 0.2171 36 1 -1.2949 6.1477 -2.4298 37 1 0.4460 4.6481 -0.6354 38 1 1.3672 5.3925 0.6967 39 1 1.6485 -2.0228 1.9277 40 1 3.0822 -4.0723 1.4418 41 1 4.2582 -4.0191 -0.7973 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000857302372.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:50:13 Heat of formation + Delta-G solvation = 13.446479 kcal Electronic energy + Delta-G solvation = -22570.043117 eV Core-core repulsion = 19348.852397 eV Total energy + Delta-G solvation = -3221.190720 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.78299 -38.20934 -36.88790 -34.53068 -33.37567 -31.75463 -29.91494 -28.88924 -27.77201 -25.26487 -24.95940 -24.02419 -21.85126 -21.34182 -19.56634 -19.03391 -18.02881 -17.10933 -16.65502 -16.08693 -15.57807 -14.87291 -14.66884 -14.42259 -13.78271 -13.66245 -13.49675 -13.19983 -13.04997 -12.80026 -12.62943 -12.51082 -12.32790 -12.09643 -11.92723 -11.84638 -11.42391 -11.00385 -10.94785 -10.82140 -10.50135 -10.31350 -10.20256 -9.85786 -9.29214 -9.14612 -9.07246 -8.76993 -8.68697 -8.46397 -8.38935 -7.61308 -5.97194 -4.05938 0.52318 1.06785 1.78587 2.06530 2.56398 3.33314 3.39254 3.40546 3.89896 3.89997 4.44873 4.80273 4.88769 5.00821 5.23585 5.32278 5.33119 5.38004 5.53638 5.56036 5.68176 5.73334 5.80670 6.03188 6.04894 6.06873 6.21076 6.23100 6.26044 6.34576 6.48098 6.63438 6.68452 6.73648 6.90916 7.00872 7.22003 7.36356 7.67839 7.91284 8.03721 8.33514 8.42224 8.93278 8.99890 9.59401 11.07988 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.025091 B = 0.003382 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.661116 B = 8277.167925 C = 8870.670616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.020 3.980 3 C -0.198 4.198 4 C 0.535 3.465 5 O -0.536 6.536 6 N -0.602 5.602 7 C 0.106 3.894 8 C -0.134 4.134 9 C -0.111 4.111 10 C 0.040 3.960 11 H 0.028 0.972 12 C -0.522 4.522 13 H 0.057 0.943 14 C 0.063 3.937 15 N -0.880 5.880 16 Si 0.892 3.108 17 H -0.278 1.278 18 H -0.287 1.287 19 H -0.277 1.277 20 C 0.113 3.887 21 C -0.170 4.170 22 C -0.121 4.121 23 C -0.137 4.137 24 C -0.263 4.263 25 S 0.194 5.806 26 H 0.082 0.918 27 H 0.050 0.950 28 H 0.096 0.904 29 H 0.127 0.873 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.050 0.950 35 H 0.049 0.951 36 H 0.264 0.736 37 H 0.123 0.877 38 H 0.040 0.960 39 H 0.144 0.856 40 H 0.137 0.863 41 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.804 -17.086 5.581 20.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.016 3.984 3 C -0.223 4.223 4 C 0.326 3.674 5 O -0.417 6.417 6 N -0.334 5.334 7 C -0.017 4.017 8 C -0.172 4.172 9 C -0.148 4.148 10 C 0.021 3.979 11 H 0.046 0.954 12 C -0.560 4.560 13 H 0.075 0.925 14 C -0.140 4.140 15 N -0.517 5.517 16 Si 0.720 3.280 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.007 4.007 21 C -0.287 4.287 22 C -0.151 4.151 23 C -0.168 4.168 24 C -0.400 4.400 25 S 0.464 5.536 26 H 0.101 0.899 27 H 0.069 0.931 28 H 0.114 0.886 29 H 0.144 0.856 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.141 0.859 38 H 0.059 0.941 39 H 0.162 0.838 40 H 0.155 0.845 41 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 8.469 -16.630 3.943 19.074 hybrid contribution -0.490 0.220 1.337 1.441 sum 7.979 -16.410 5.281 18.996 Atomic orbital electron populations 1.21108 0.89298 1.02177 1.04053 1.19356 0.96328 0.89497 0.93263 1.22309 1.00611 0.92921 1.06442 1.16885 0.87244 0.84161 0.79078 1.90814 1.14838 1.87399 1.48674 1.48445 1.10863 1.07695 1.66412 1.21801 0.82151 0.99970 0.97820 1.22030 0.97945 0.98239 0.99022 1.21626 0.98907 0.93856 1.00436 1.18964 0.89163 0.95386 0.94367 0.95376 1.21047 0.97638 0.91799 1.45562 0.92474 1.25047 0.97352 0.96578 0.95011 1.69877 1.10029 1.27529 1.44309 0.86658 0.78325 0.84559 0.78458 1.20325 1.21261 1.20270 1.22252 1.00402 0.79892 0.98169 1.22494 1.06118 1.00383 0.99730 1.20798 1.01639 0.93068 0.99606 1.19940 0.99622 0.99798 0.97465 1.25162 1.09105 1.04757 1.00986 1.83404 1.40243 1.10923 1.19014 0.89935 0.93066 0.88607 0.85564 0.92035 0.90957 0.92126 0.92332 0.93086 0.93227 0.92627 0.85897 0.94148 0.83790 0.84520 0.82075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.63 8.43 36.01 0.30 -1.32 16 2 C 0.02 0.29 5.69 -104.28 -0.59 -0.31 16 3 C -0.20 -3.14 8.83 -39.28 -0.35 -3.48 16 4 C 0.53 10.79 7.32 -15.02 -0.11 10.68 16 5 O -0.54 -12.59 12.61 5.11 0.06 -12.53 16 6 N -0.60 -12.23 2.97 -175.96 -0.52 -12.75 16 7 C 0.11 1.69 6.36 -3.49 -0.02 1.67 16 8 C -0.13 -2.18 6.10 -26.39 -0.16 -2.34 16 9 C -0.11 -2.21 5.10 -26.69 -0.14 -2.35 16 10 C 0.04 1.00 2.25 -91.65 -0.21 0.79 16 11 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 12 C -0.52 -14.20 8.56 -34.44 -0.29 -14.50 16 13 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 14 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 15 N -0.88 -25.69 11.39 55.43 0.63 -25.06 16 16 Si 0.89 21.34 29.54 -169.99 -5.02 16.31 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 C 0.11 2.76 5.39 -3.71 -0.02 2.74 16 21 C -0.17 -2.08 5.55 -38.74 -0.22 -2.29 16 22 C -0.12 -1.28 10.25 -40.30 -0.41 -1.69 16 23 C -0.14 -1.27 10.15 -41.41 -0.42 -1.69 16 24 C -0.26 -2.40 10.92 29.20 0.32 -2.08 16 25 S 0.19 2.07 23.06 -107.50 -2.48 -0.41 16 26 H 0.08 1.32 8.02 -51.93 -0.42 0.90 16 27 H 0.05 0.63 8.06 -51.93 -0.42 0.21 16 28 H 0.10 1.63 6.20 -51.93 -0.32 1.31 16 29 H 0.13 1.71 5.79 -52.49 -0.30 1.41 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.07 0.95 5.30 -51.93 -0.28 0.67 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.12 3.49 5.14 -51.93 -0.27 3.22 16 38 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 39 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 40 H 0.14 0.96 8.06 -52.49 -0.42 0.53 16 41 H 0.16 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 342.81 15.07 5.17 5.17 Total: -1.00 -30.65 342.81 -10.34 -40.99 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -5.77 Total: 2.79 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: -2.41 Total: -14.52 kcal Atomic # 7 Polarization: -37.92 SS G_CDS: 0.11 Total: -37.81 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: 0.06 Total: -12.53 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: 2.07 SS G_CDS: -2.48 Total: -0.41 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.65 -10.34 -40.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857302372.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.436 kcal (2) G-P(sol) polarization free energy of solvation -30.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds