Wall clock time and date at job start Tue Mar 31 2020 08:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35643 * 120.00178 * 2 1 4 4 C 1.41481 * 120.00045 * 352.88463 * 3 2 1 5 5 O 1.21785 * 119.99764 * 353.09479 * 4 3 2 6 6 N 1.34778 * 119.99997 * 172.81337 * 4 3 2 7 7 C 1.46922 * 120.63053 * 356.05662 * 6 4 3 8 8 C 1.53623 * 108.54140 * 126.36708 * 7 6 4 9 9 C 1.53043 * 109.24203 * 54.85759 * 8 7 6 10 10 C 1.53037 * 109.53430 * 298.50718 * 9 8 7 11 11 H 1.08998 * 109.50198 * 301.41074 * 10 9 8 12 12 C 1.50700 * 109.49670 * 181.31627 * 10 9 8 13 13 H 1.08001 * 119.99919 * 0.16485 * 12 10 9 14 14 C 1.37879 * 120.00438 * 180.16339 * 12 10 9 15 15 N 1.31515 * 119.99806 * 0.02562 * 14 12 10 16 16 Si 1.86798 * 120.00297 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.46974 * 60.00075 * 16 14 12 18 18 H 1.48500 * 109.47217 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.46983 * 300.00146 * 16 14 12 20 20 C 1.46926 * 120.62653 * 176.33715 * 6 4 3 21 21 C 1.41579 * 119.99698 * 180.02562 * 2 1 3 22 22 C 1.37042 * 125.47687 * 294.71398 * 21 2 1 23 23 C 1.37444 * 113.22179 * 179.86541 * 22 21 2 24 24 C 1.33861 * 115.12824 * 0.43056 * 23 22 21 25 25 S 1.70612 * 111.01365 * 359.75865 * 24 23 22 26 26 H 1.08996 * 109.47156 * 84.29599 * 1 2 3 27 27 H 1.09001 * 109.47437 * 204.29854 * 1 2 3 28 28 H 1.09004 * 109.46721 * 324.29390 * 1 2 3 29 29 H 1.08002 * 120.00304 * 172.88726 * 3 2 1 30 30 H 1.08997 * 109.58504 * 246.20086 * 7 6 4 31 31 H 1.09001 * 109.58758 * 6.62551 * 7 6 4 32 32 H 1.08999 * 109.63544 * 294.86517 * 8 7 6 33 33 H 1.08997 * 109.45741 * 174.73929 * 8 7 6 34 34 H 1.09004 * 109.45855 * 178.49192 * 9 8 7 35 35 H 1.09000 * 109.44977 * 58.52298 * 9 8 7 36 36 H 0.96999 * 120.00217 * 180.02562 * 15 14 12 37 37 H 1.09002 * 109.59206 * 353.36736 * 20 6 4 38 38 H 1.08993 * 109.59058 * 113.80191 * 20 6 4 39 39 H 1.07994 * 123.39286 * 0.04175 * 22 21 2 40 40 H 1.08002 * 122.43441 * 180.18988 * 23 22 21 41 41 H 1.07996 * 124.49648 * 179.76146 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1853 1.1747 0.0000 4 6 1.4861 2.3952 -0.1518 5 8 0.2955 2.3872 -0.4078 6 7 2.1364 3.5669 -0.0074 7 6 3.5501 3.5941 0.3918 8 6 4.3317 4.4279 -0.6348 9 6 3.6869 5.8104 -0.7576 10 6 2.2473 5.6613 -1.2546 11 1 2.2459 5.1511 -2.2179 12 6 1.6237 7.0248 -1.4061 13 1 2.1975 7.9098 -1.1739 14 6 0.3206 7.1426 -1.8411 15 7 -0.3783 6.0649 -2.1234 16 14 -0.4521 8.8328 -2.0295 17 1 0.3275 9.6266 -3.0130 18 1 -1.8502 8.6873 -2.5086 19 1 -0.4477 9.5281 -0.7174 20 6 1.4434 4.8413 -0.2405 21 6 2.2149 -1.2262 -0.0005 22 6 2.2084 -2.1487 1.0128 23 6 2.9832 -3.2521 0.7461 24 6 3.6101 -3.2341 -0.4365 25 16 3.2496 -1.8065 -1.2984 26 1 -0.3633 0.1021 -1.0225 27 1 -0.3634 -0.9366 0.4229 28 1 -0.3633 0.8345 0.5998 29 1 3.2591 1.1783 0.1158 30 1 3.6422 4.0456 1.3796 31 1 3.9431 2.5776 0.4144 32 1 4.3107 3.9293 -1.6038 33 1 5.3645 4.5363 -0.3037 34 1 4.2548 6.4143 -1.4654 35 1 3.6859 6.2983 0.2171 36 1 -1.2949 6.1477 -2.4298 37 1 0.4460 4.6481 -0.6354 38 1 1.3672 5.3925 0.6967 39 1 1.6485 -2.0228 1.9277 40 1 3.0822 -4.0723 1.4418 41 1 4.2582 -4.0191 -0.7973 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000857302372.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:50:12 Heat of formation + Delta-G solvation = -3.089887 kcal Electronic energy + Delta-G solvation = -22570.760188 eV Core-core repulsion = 19348.852397 eV Total energy + Delta-G solvation = -3221.907791 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.29488 -39.18797 -38.37990 -35.70686 -35.29932 -33.47342 -31.62256 -29.94205 -29.04698 -27.01322 -26.31268 -25.28841 -23.47474 -22.56054 -21.03706 -19.96298 -19.47058 -18.52937 -18.29880 -17.51863 -16.66892 -16.52454 -16.17630 -16.01925 -15.20171 -15.08026 -14.75659 -14.58124 -14.36196 -14.24224 -13.90591 -13.60649 -13.54724 -13.48442 -13.25144 -13.03845 -12.86411 -12.82669 -12.52805 -12.26820 -12.19329 -11.77249 -11.74693 -11.61622 -11.04833 -10.92388 -10.54756 -10.41724 -10.34764 -9.51998 -9.43524 -9.19839 -8.10045 -6.27287 -0.43526 0.13935 0.94515 1.18292 1.40639 1.42378 1.50594 1.79433 2.34969 2.42956 2.44901 3.18080 3.73672 3.82567 4.08004 4.17946 4.23582 4.27586 4.35164 4.42272 4.61016 4.63983 4.65386 4.76578 4.77624 4.81074 4.88548 4.99565 5.08920 5.11729 5.24530 5.27912 5.29825 5.33408 5.38241 5.53848 5.55044 5.58626 5.69929 5.91685 6.01934 6.34517 6.75013 6.85254 7.39038 7.43530 8.93095 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.025091 B = 0.003382 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.661116 B = 8277.167925 C = 8870.670616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.051 3.949 3 C -0.220 4.220 4 C 0.527 3.473 5 O -0.586 6.586 6 N -0.610 5.610 7 C 0.102 3.898 8 C -0.126 4.126 9 C -0.105 4.105 10 C 0.039 3.961 11 H -0.015 1.015 12 C -0.538 4.538 13 H 0.061 0.939 14 C 0.010 3.990 15 N -0.914 5.914 16 Si 0.958 3.042 17 H -0.268 1.268 18 H -0.288 1.288 19 H -0.267 1.267 20 C 0.128 3.872 21 C -0.211 4.211 22 C -0.104 4.104 23 C -0.145 4.145 24 C -0.246 4.246 25 S 0.187 5.813 26 H 0.066 0.934 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.154 0.846 30 H 0.078 0.922 31 H 0.108 0.892 32 H 0.051 0.949 33 H 0.103 0.897 34 H 0.051 0.949 35 H 0.056 0.944 36 H 0.259 0.741 37 H 0.077 0.923 38 H 0.032 0.968 39 H 0.156 0.844 40 H 0.165 0.835 41 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.423 -18.960 6.877 23.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.046 3.954 3 C -0.244 4.244 4 C 0.321 3.679 5 O -0.470 6.470 6 N -0.341 5.341 7 C -0.020 4.020 8 C -0.164 4.164 9 C -0.143 4.143 10 C 0.020 3.980 11 H 0.004 0.996 12 C -0.577 4.577 13 H 0.080 0.920 14 C -0.190 4.190 15 N -0.553 5.553 16 Si 0.783 3.217 17 H -0.193 1.193 18 H -0.214 1.214 19 H -0.192 1.192 20 C 0.005 3.995 21 C -0.329 4.329 22 C -0.135 4.135 23 C -0.176 4.176 24 C -0.383 4.383 25 S 0.457 5.543 26 H 0.084 0.916 27 H 0.098 0.902 28 H 0.088 0.912 29 H 0.171 0.829 30 H 0.096 0.904 31 H 0.126 0.874 32 H 0.070 0.930 33 H 0.122 0.878 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.095 0.905 38 H 0.050 0.950 39 H 0.174 0.826 40 H 0.182 0.818 41 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 11.140 -18.495 5.251 22.220 hybrid contribution -1.300 0.635 0.937 1.724 sum 9.840 -17.859 6.188 21.309 Atomic orbital electron populations 1.21037 0.90414 1.02498 1.02691 1.19421 0.95817 0.90335 0.89792 1.22129 1.01535 0.91021 1.09671 1.17599 0.86921 0.85387 0.77961 1.90793 1.17124 1.88109 1.50990 1.48457 1.12753 1.06264 1.66607 1.22142 0.79270 1.02320 0.98279 1.21992 0.99976 0.95457 0.99005 1.21517 0.95737 0.96694 1.00362 1.18894 0.92563 0.93925 0.92633 0.99644 1.21501 0.97993 0.93121 1.45056 0.92049 1.25900 0.98041 1.00225 0.94810 1.70084 1.09986 1.29794 1.45425 0.85613 0.77171 0.80060 0.78847 1.19324 1.21423 1.19232 1.21640 0.98809 0.81890 0.97132 1.22359 1.08466 1.00325 1.01702 1.21083 1.00661 0.92508 0.99294 1.20222 0.99219 1.00077 0.98070 1.25552 1.08220 1.04195 1.00332 1.83477 1.39865 1.12073 1.18863 0.91596 0.90237 0.91223 0.82888 0.90376 0.87401 0.93044 0.87831 0.93002 0.92551 0.93159 0.90459 0.94995 0.82625 0.81799 0.79389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.36 8.43 71.24 0.60 -2.76 16 2 C 0.05 1.44 5.69 -19.64 -0.11 1.33 16 3 C -0.22 -6.88 8.83 22.47 0.20 -6.68 16 4 C 0.53 22.15 7.32 85.04 0.62 22.77 16 5 O -0.59 -29.62 12.61 -4.62 -0.06 -29.68 16 6 N -0.61 -25.38 2.97 -828.78 -2.46 -27.83 16 7 C 0.10 3.03 6.36 86.51 0.55 3.58 16 8 C -0.13 -3.84 6.10 30.82 0.19 -3.65 16 9 C -0.11 -4.17 5.10 30.62 0.16 -4.01 16 10 C 0.04 2.02 2.25 -11.46 -0.03 1.99 16 11 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 12 C -0.54 -30.24 8.56 25.60 0.22 -30.02 16 13 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 14 C 0.01 0.55 5.30 84.65 0.45 1.00 16 15 N -0.91 -56.47 11.39 21.45 0.24 -56.23 16 16 Si 0.96 44.91 29.54 68.60 2.03 46.94 16 17 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 18 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 19 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 20 C 0.13 6.57 5.39 86.36 0.47 7.04 16 21 C -0.21 -4.75 5.55 22.81 0.13 -4.63 16 22 C -0.10 -1.87 10.25 21.80 0.22 -1.65 16 23 C -0.15 -2.08 10.15 21.09 0.21 -1.87 16 24 C -0.25 -3.50 10.92 66.82 0.73 -2.77 16 25 S 0.19 3.56 23.06 -56.49 -1.30 2.26 16 26 H 0.07 2.25 8.02 -2.39 -0.02 2.23 16 27 H 0.08 1.91 8.06 -2.39 -0.02 1.90 16 28 H 0.07 2.53 6.20 -2.39 -0.01 2.52 16 29 H 0.15 3.82 5.79 -2.91 -0.02 3.80 16 30 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.11 2.48 5.30 -2.39 -0.01 2.46 16 32 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 35 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 37 H 0.08 4.73 5.14 -2.39 -0.01 4.72 16 38 H 0.03 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.16 2.37 8.06 -2.91 -0.02 2.35 16 40 H 0.16 1.47 8.06 -2.91 -0.02 1.45 16 41 H 0.19 1.64 8.06 -2.91 -0.02 1.61 16 Total: -1.00 -72.57 342.81 4.08 -68.49 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: 1.03 Total: 16.37 kcal Atomic # 6 Polarization: -24.92 SS G_CDS: 4.61 Total: -20.31 kcal Atomic # 7 Polarization: -81.85 SS G_CDS: -2.21 Total: -84.06 kcal Atomic # 8 Polarization: -29.62 SS G_CDS: -0.06 Total: -29.68 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Atomic # 16 Polarization: 3.56 SS G_CDS: -1.30 Total: 2.26 kcal Total: -72.57 4.08 -68.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857302372.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.396 kcal (2) G-P(sol) polarization free energy of solvation -72.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds