Wall clock time and date at job start Tue Mar 31 2020 08:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35645 * 119.99943 * 2 1 4 4 C 1.41476 * 120.00452 * 7.42785 * 3 2 1 5 5 O 1.21780 * 119.99483 * 7.37944 * 4 3 2 6 6 N 1.34774 * 120.00136 * 187.38238 * 4 3 2 7 7 C 1.46930 * 120.62922 * 354.44182 * 6 4 3 8 8 C 1.53193 * 108.77211 * 233.58734 * 7 6 4 9 9 C 1.53039 * 109.31831 * 305.36584 * 8 7 6 10 10 C 1.53038 * 109.53500 * 61.36688 * 9 8 7 11 11 H 1.09000 * 109.49816 * 58.58408 * 10 9 8 12 12 C 1.50698 * 109.49787 * 178.65291 * 10 9 8 13 13 H 1.07997 * 120.00094 * 0.02562 * 12 10 9 14 14 C 1.37881 * 120.00335 * 180.02562 * 12 10 9 15 15 N 1.31518 * 119.99587 * 0.02562 * 14 12 10 16 16 Si 1.86795 * 120.00407 * 180.02562 * 14 12 10 17 17 H 1.48495 * 109.47213 * 59.99780 * 16 14 12 18 18 H 1.48497 * 109.47532 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.46991 * 300.00232 * 16 14 12 20 20 C 1.46923 * 120.63070 * 174.16828 * 6 4 3 21 21 C 1.41589 * 119.99546 * 179.97438 * 2 1 3 22 22 C 1.37040 * 125.47574 * 295.27135 * 21 2 1 23 23 C 1.37433 * 113.21961 * 180.16411 * 22 21 2 24 24 C 1.33855 * 115.13037 * 359.55444 * 23 22 21 25 25 S 1.70612 * 111.01281 * 0.25056 * 24 23 22 26 26 H 1.08991 * 109.47145 * 275.56295 * 1 2 3 27 27 H 1.09000 * 109.46619 * 35.55667 * 1 2 3 28 28 H 1.09002 * 109.47109 * 155.55480 * 1 2 3 29 29 H 1.07999 * 119.99891 * 187.43273 * 3 2 1 30 30 H 1.08999 * 109.58926 * 353.37712 * 7 6 4 31 31 H 1.09002 * 109.58089 * 113.66041 * 7 6 4 32 32 H 1.09000 * 109.50076 * 65.32311 * 8 7 6 33 33 H 1.09007 * 109.49478 * 185.41440 * 8 7 6 34 34 H 1.08991 * 109.46065 * 181.38819 * 9 8 7 35 35 H 1.09002 * 109.46053 * 301.35067 * 9 8 7 36 36 H 0.97000 * 119.99864 * 179.97438 * 15 14 12 37 37 H 1.08998 * 109.58940 * 246.19774 * 20 6 4 38 38 H 1.09000 * 109.58562 * 6.62614 * 20 6 4 39 39 H 1.08000 * 123.38842 * 0.02562 * 22 21 2 40 40 H 1.08000 * 122.43663 * 179.83314 * 23 22 21 41 41 H 1.08002 * 124.49737 * 180.22572 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1853 1.1747 0.0000 4 6 1.4869 2.3949 0.1584 5 8 0.2994 2.3860 0.4285 6 7 2.1357 3.5668 0.0103 7 6 3.5902 3.5965 -0.1951 8 6 4.2171 4.5226 0.8519 9 6 3.5443 5.8953 0.7814 10 6 2.0534 5.7511 1.0950 11 1 1.9306 5.3148 2.0863 12 6 1.3981 7.1077 1.0578 13 1 1.9858 7.9853 0.8326 14 6 0.0482 7.2285 1.3114 15 7 -0.6674 6.1598 1.5861 16 14 -0.7642 8.9099 1.2646 17 1 -0.5987 9.5022 -0.0870 18 1 -2.2106 8.7696 1.5703 19 1 -0.1290 9.7948 2.2739 20 6 1.4011 4.8388 0.0452 21 6 2.2149 -1.2263 0.0005 22 6 2.1999 -2.1528 1.0102 23 6 2.9820 -3.2521 0.7484 24 6 3.6084 -3.2355 -0.4344 25 16 3.2487 -1.8082 -1.2972 26 1 -0.3633 0.0996 1.0227 27 1 -0.3632 0.8361 -0.5976 28 1 -0.3633 -0.9356 -0.4253 29 1 3.2585 1.1786 -0.1210 30 1 3.9957 2.5909 -0.0831 31 1 3.8104 3.9701 -1.1951 32 1 4.0741 4.0979 1.8456 33 1 5.2833 4.6292 0.6515 34 1 4.0054 6.5635 1.5086 35 1 3.6665 6.3086 -0.2198 36 1 -1.6170 6.2448 1.7649 37 1 1.4465 5.3140 -0.9347 38 1 0.3616 4.6531 0.3157 39 1 1.6324 -2.0303 1.9209 40 1 3.0803 -4.0721 1.4444 41 1 4.2560 -4.0211 -0.7948 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000857302374.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:50:16 Heat of formation + Delta-G solvation = 13.632007 kcal Electronic energy + Delta-G solvation = -22555.408970 eV Core-core repulsion = 19334.226295 eV Total energy + Delta-G solvation = -3221.182675 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.78515 -38.21009 -36.88371 -34.54159 -33.36526 -31.76544 -29.91206 -28.89620 -27.78173 -25.26142 -24.95833 -24.02530 -21.84925 -21.34174 -19.56455 -19.06418 -18.01891 -17.08396 -16.67385 -16.09031 -15.54586 -14.88332 -14.67144 -14.43304 -13.78337 -13.66244 -13.43770 -13.39888 -12.87853 -12.75748 -12.69033 -12.50673 -12.34797 -12.15688 -11.91720 -11.83662 -11.44162 -11.05482 -10.94659 -10.82157 -10.49970 -10.32044 -10.19735 -9.84562 -9.26054 -9.14385 -9.06260 -8.77305 -8.71139 -8.47544 -8.38803 -7.60178 -5.96094 -4.05006 0.53677 1.05199 1.74783 2.03004 2.56287 3.33565 3.39525 3.40816 3.85865 3.93228 4.45386 4.80696 4.89050 4.99272 5.22243 5.32617 5.33658 5.38680 5.54084 5.56090 5.67579 5.72667 5.84160 6.02654 6.04376 6.06161 6.20029 6.22467 6.25919 6.34765 6.48069 6.63526 6.68398 6.73317 6.90539 7.01361 7.21632 7.36522 7.68289 7.91662 8.04149 8.33371 8.42882 8.93736 9.00083 9.60169 11.08936 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.026275 B = 0.003332 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.416137 B = 8400.518509 C = 9095.733773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.019 3.981 3 C -0.197 4.197 4 C 0.534 3.466 5 O -0.533 6.533 6 N -0.603 5.603 7 C 0.107 3.893 8 C -0.134 4.134 9 C -0.110 4.110 10 C 0.041 3.959 11 H 0.029 0.971 12 C -0.522 4.522 13 H 0.057 0.943 14 C 0.063 3.937 15 N -0.879 5.879 16 Si 0.892 3.108 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.278 1.278 20 C 0.113 3.887 21 C -0.167 4.167 22 C -0.118 4.118 23 C -0.135 4.135 24 C -0.262 4.262 25 S 0.180 5.820 26 H 0.083 0.917 27 H 0.096 0.904 28 H 0.050 0.950 29 H 0.126 0.874 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.050 0.950 35 H 0.049 0.951 36 H 0.263 0.737 37 H 0.041 0.959 38 H 0.123 0.877 39 H 0.146 0.854 40 H 0.138 0.862 41 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.439 -17.339 -4.975 20.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.015 3.985 3 C -0.221 4.221 4 C 0.326 3.674 5 O -0.414 6.414 6 N -0.335 5.335 7 C -0.016 4.016 8 C -0.172 4.172 9 C -0.148 4.148 10 C 0.022 3.978 11 H 0.047 0.953 12 C -0.561 4.561 13 H 0.075 0.925 14 C -0.140 4.140 15 N -0.516 5.516 16 Si 0.719 3.281 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.007 4.007 21 C -0.284 4.284 22 C -0.149 4.149 23 C -0.166 4.166 24 C -0.398 4.398 25 S 0.450 5.550 26 H 0.101 0.899 27 H 0.114 0.886 28 H 0.069 0.931 29 H 0.144 0.856 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.059 0.941 38 H 0.141 0.859 39 H 0.163 0.837 40 H 0.156 0.844 41 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 9.099 -16.888 -6.230 20.169 hybrid contribution -0.502 0.216 1.419 1.521 sum 8.597 -16.672 -4.811 19.365 Atomic orbital electron populations 1.21092 0.89249 1.02166 1.04085 1.19370 0.96345 0.89481 0.93295 1.22325 1.00536 0.92962 1.06284 1.16881 0.87303 0.84144 0.79119 1.90825 1.15434 1.87383 1.47750 1.48436 1.07340 1.07748 1.70004 1.21696 0.81444 0.99653 0.98847 1.21950 0.98478 0.97805 0.98979 1.21625 0.98798 0.93915 1.00482 1.19029 0.88996 0.94902 0.94907 0.95303 1.21049 0.93627 0.92506 1.48910 0.92504 1.25051 0.97546 0.96533 0.94871 1.69894 1.07390 1.27848 1.46489 0.86669 0.78365 0.84546 0.78474 1.20284 1.21273 1.20332 1.22331 1.00064 0.79909 0.98431 1.22526 1.05944 1.00231 0.99696 1.20788 1.01468 0.92915 0.99695 1.19955 0.99358 0.99839 0.97454 1.25113 1.09244 1.04584 1.00896 1.83260 1.41221 1.11253 1.19266 0.89893 0.88588 0.93090 0.85638 0.91049 0.92130 0.92155 0.92283 0.93091 0.93232 0.92652 0.94109 0.85936 0.83668 0.84429 0.82088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.61 8.42 36.01 0.30 -1.31 16 2 C 0.02 0.28 5.69 -104.27 -0.59 -0.31 16 3 C -0.20 -3.10 8.84 -39.28 -0.35 -3.44 16 4 C 0.53 10.75 7.31 -15.03 -0.11 10.64 16 5 O -0.53 -12.54 12.63 5.12 0.06 -12.48 16 6 N -0.60 -12.23 2.97 -175.95 -0.52 -12.75 16 7 C 0.11 1.71 6.30 -3.71 -0.02 1.68 16 8 C -0.13 -2.20 6.08 -26.61 -0.16 -2.36 16 9 C -0.11 -2.22 5.10 -26.69 -0.14 -2.36 16 10 C 0.04 1.02 2.26 -91.43 -0.21 0.81 16 11 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 12 C -0.52 -14.24 8.56 -34.44 -0.29 -14.54 16 13 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 14 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 15 N -0.88 -25.71 11.41 55.43 0.63 -25.07 16 16 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 C 0.11 2.75 5.44 -3.48 -0.02 2.73 16 21 C -0.17 -2.03 5.55 -38.74 -0.22 -2.25 16 22 C -0.12 -1.30 10.25 -40.31 -0.41 -1.72 16 23 C -0.13 -1.27 10.14 -41.41 -0.42 -1.69 16 24 C -0.26 -2.34 10.92 29.19 0.32 -2.02 16 25 S 0.18 1.80 23.06 -107.50 -2.48 -0.67 16 26 H 0.08 1.29 8.01 -51.93 -0.42 0.88 16 27 H 0.10 1.65 6.23 -51.93 -0.32 1.33 16 28 H 0.05 0.63 8.06 -51.93 -0.42 0.22 16 29 H 0.13 1.68 5.78 -52.49 -0.30 1.38 16 30 H 0.07 0.94 5.36 -51.93 -0.28 0.66 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 34 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 37 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.12 3.46 5.14 -51.93 -0.27 3.20 16 39 H 0.15 1.47 8.06 -52.49 -0.42 1.05 16 40 H 0.14 1.00 8.06 -52.49 -0.42 0.57 16 41 H 0.16 1.06 8.06 -52.49 -0.42 0.63 16 LS Contribution 342.91 15.07 5.17 5.17 Total: -1.00 -30.73 342.91 -10.35 -41.07 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -5.78 Total: 2.88 kcal Atomic # 6 Polarization: -12.06 SS G_CDS: -2.41 Total: -14.47 kcal Atomic # 7 Polarization: -37.94 SS G_CDS: 0.11 Total: -37.83 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.06 Total: -12.48 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: 1.80 SS G_CDS: -2.48 Total: -0.67 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.73 -10.35 -41.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857302374.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.706 kcal (2) G-P(sol) polarization free energy of solvation -30.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds