Wall clock time and date at job start Tue Mar 31 2020 08:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35645 * 119.99943 * 2 1 4 4 C 1.41476 * 120.00452 * 7.42785 * 3 2 1 5 5 O 1.21780 * 119.99483 * 7.37944 * 4 3 2 6 6 N 1.34774 * 120.00136 * 187.38238 * 4 3 2 7 7 C 1.46930 * 120.62922 * 354.44182 * 6 4 3 8 8 C 1.53193 * 108.77211 * 233.58734 * 7 6 4 9 9 C 1.53039 * 109.31831 * 305.36584 * 8 7 6 10 10 C 1.53038 * 109.53500 * 61.36688 * 9 8 7 11 11 H 1.09000 * 109.49816 * 58.58408 * 10 9 8 12 12 C 1.50698 * 109.49787 * 178.65291 * 10 9 8 13 13 H 1.07997 * 120.00094 * 0.02562 * 12 10 9 14 14 C 1.37881 * 120.00335 * 180.02562 * 12 10 9 15 15 N 1.31518 * 119.99587 * 0.02562 * 14 12 10 16 16 Si 1.86795 * 120.00407 * 180.02562 * 14 12 10 17 17 H 1.48495 * 109.47213 * 59.99780 * 16 14 12 18 18 H 1.48497 * 109.47532 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.46991 * 300.00232 * 16 14 12 20 20 C 1.46923 * 120.63070 * 174.16828 * 6 4 3 21 21 C 1.41589 * 119.99546 * 179.97438 * 2 1 3 22 22 C 1.37040 * 125.47574 * 295.27135 * 21 2 1 23 23 C 1.37433 * 113.21961 * 180.16411 * 22 21 2 24 24 C 1.33855 * 115.13037 * 359.55444 * 23 22 21 25 25 S 1.70612 * 111.01281 * 0.25056 * 24 23 22 26 26 H 1.08991 * 109.47145 * 275.56295 * 1 2 3 27 27 H 1.09000 * 109.46619 * 35.55667 * 1 2 3 28 28 H 1.09002 * 109.47109 * 155.55480 * 1 2 3 29 29 H 1.07999 * 119.99891 * 187.43273 * 3 2 1 30 30 H 1.08999 * 109.58926 * 353.37712 * 7 6 4 31 31 H 1.09002 * 109.58089 * 113.66041 * 7 6 4 32 32 H 1.09000 * 109.50076 * 65.32311 * 8 7 6 33 33 H 1.09007 * 109.49478 * 185.41440 * 8 7 6 34 34 H 1.08991 * 109.46065 * 181.38819 * 9 8 7 35 35 H 1.09002 * 109.46053 * 301.35067 * 9 8 7 36 36 H 0.97000 * 119.99864 * 179.97438 * 15 14 12 37 37 H 1.08998 * 109.58940 * 246.19774 * 20 6 4 38 38 H 1.09000 * 109.58562 * 6.62614 * 20 6 4 39 39 H 1.08000 * 123.38842 * 0.02562 * 22 21 2 40 40 H 1.08000 * 122.43663 * 179.83314 * 23 22 21 41 41 H 1.08002 * 124.49737 * 180.22572 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1853 1.1747 0.0000 4 6 1.4869 2.3949 0.1584 5 8 0.2994 2.3860 0.4285 6 7 2.1357 3.5668 0.0103 7 6 3.5902 3.5965 -0.1951 8 6 4.2171 4.5226 0.8519 9 6 3.5443 5.8953 0.7814 10 6 2.0534 5.7511 1.0950 11 1 1.9306 5.3148 2.0863 12 6 1.3981 7.1077 1.0578 13 1 1.9858 7.9853 0.8326 14 6 0.0482 7.2285 1.3114 15 7 -0.6674 6.1598 1.5861 16 14 -0.7642 8.9099 1.2646 17 1 -0.5987 9.5022 -0.0870 18 1 -2.2106 8.7696 1.5703 19 1 -0.1290 9.7948 2.2739 20 6 1.4011 4.8388 0.0452 21 6 2.2149 -1.2263 0.0005 22 6 2.1999 -2.1528 1.0102 23 6 2.9820 -3.2521 0.7484 24 6 3.6084 -3.2355 -0.4344 25 16 3.2487 -1.8082 -1.2972 26 1 -0.3633 0.0996 1.0227 27 1 -0.3632 0.8361 -0.5976 28 1 -0.3633 -0.9356 -0.4253 29 1 3.2585 1.1786 -0.1210 30 1 3.9957 2.5909 -0.0831 31 1 3.8104 3.9701 -1.1951 32 1 4.0741 4.0979 1.8456 33 1 5.2833 4.6292 0.6515 34 1 4.0054 6.5635 1.5086 35 1 3.6665 6.3086 -0.2198 36 1 -1.6170 6.2448 1.7649 37 1 1.4465 5.3140 -0.9347 38 1 0.3616 4.6531 0.3157 39 1 1.6324 -2.0303 1.9209 40 1 3.0803 -4.0721 1.4444 41 1 4.2560 -4.0211 -0.7948 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000857302374.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:50:15 Heat of formation + Delta-G solvation = -2.989998 kcal Electronic energy + Delta-G solvation = -22556.129754 eV Core-core repulsion = 19334.226295 eV Total energy + Delta-G solvation = -3221.903459 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.29414 -39.18928 -38.37392 -35.71806 -35.29221 -33.48431 -31.62370 -29.94352 -29.06008 -27.00791 -26.31521 -25.28827 -23.47644 -22.55512 -21.06028 -19.99169 -19.44043 -18.51780 -18.27844 -17.53850 -16.65345 -16.45516 -16.15317 -16.11067 -15.19901 -14.99716 -14.83538 -14.60981 -14.36054 -14.30029 -13.76788 -13.70699 -13.53494 -13.45841 -13.29959 -13.03767 -12.87064 -12.84006 -12.53821 -12.26718 -12.19545 -11.80732 -11.74537 -11.61170 -11.04492 -10.91874 -10.55030 -10.40397 -10.33753 -9.53359 -9.42466 -9.17247 -8.09247 -6.26750 -0.41209 0.12541 0.91708 1.15824 1.40727 1.42435 1.50683 1.78198 2.33970 2.42605 2.46110 3.18408 3.74190 3.81503 4.07360 4.19044 4.23890 4.26534 4.34954 4.41266 4.60803 4.63047 4.64592 4.76264 4.77992 4.80686 4.88114 4.98551 5.08512 5.10591 5.24343 5.27916 5.29330 5.32735 5.38293 5.53016 5.54522 5.58416 5.70301 5.92004 6.01876 6.34800 6.75151 6.85884 7.39253 7.43889 8.93771 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.026275 B = 0.003332 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.416137 B = 8400.518509 C = 9095.733773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.049 3.951 3 C -0.218 4.218 4 C 0.527 3.473 5 O -0.584 6.584 6 N -0.611 5.611 7 C 0.102 3.898 8 C -0.127 4.127 9 C -0.105 4.105 10 C 0.039 3.961 11 H -0.016 1.016 12 C -0.539 4.539 13 H 0.061 0.939 14 C 0.009 3.991 15 N -0.914 5.914 16 Si 0.958 3.042 17 H -0.267 1.267 18 H -0.289 1.289 19 H -0.269 1.269 20 C 0.127 3.873 21 C -0.210 4.210 22 C -0.111 4.111 23 C -0.147 4.147 24 C -0.247 4.247 25 S 0.204 5.796 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.154 0.846 30 H 0.107 0.893 31 H 0.080 0.920 32 H 0.048 0.952 33 H 0.104 0.896 34 H 0.050 0.950 35 H 0.057 0.943 36 H 0.259 0.741 37 H 0.035 0.965 38 H 0.077 0.923 39 H 0.147 0.853 40 H 0.161 0.839 41 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.330 -19.124 -6.031 23.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.045 3.955 3 C -0.241 4.241 4 C 0.321 3.679 5 O -0.468 6.468 6 N -0.342 5.342 7 C -0.020 4.020 8 C -0.165 4.165 9 C -0.143 4.143 10 C 0.020 3.980 11 H 0.002 0.998 12 C -0.577 4.577 13 H 0.079 0.921 14 C -0.190 4.190 15 N -0.552 5.552 16 Si 0.783 3.217 17 H -0.192 1.192 18 H -0.214 1.214 19 H -0.194 1.194 20 C 0.005 3.995 21 C -0.327 4.327 22 C -0.142 4.142 23 C -0.177 4.177 24 C -0.384 4.384 25 S 0.474 5.526 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.094 0.906 29 H 0.172 0.828 30 H 0.125 0.875 31 H 0.098 0.902 32 H 0.066 0.934 33 H 0.123 0.877 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.053 0.947 38 H 0.095 0.905 39 H 0.164 0.836 40 H 0.179 0.821 41 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 12.042 -18.663 -7.298 23.379 hybrid contribution -1.393 0.612 1.748 2.318 sum 10.648 -18.051 -5.550 21.680 Atomic orbital electron populations 1.21016 0.90438 1.02209 1.02909 1.19431 0.95808 0.90364 0.89876 1.22139 1.01499 0.91027 1.09477 1.17596 0.86958 0.85380 0.77985 1.90805 1.17754 1.88099 1.50136 1.48452 1.09293 1.06330 1.70115 1.22045 0.78408 1.01827 0.99678 1.21918 1.00696 0.95180 0.98667 1.21515 0.95379 0.96664 1.00737 1.18962 0.92644 0.93706 0.92705 0.99820 1.21501 0.94080 0.93803 1.48317 0.92061 1.25906 0.98342 1.00156 0.94594 1.70103 1.07252 1.30113 1.47735 0.85617 0.77047 0.80059 0.78987 1.19170 1.21435 1.19384 1.21722 0.98340 0.81930 0.97543 1.22407 1.08338 1.00053 1.01940 1.21008 1.00984 0.92883 0.99360 1.20172 0.99250 0.99992 0.98302 1.25547 1.08208 1.04453 1.00182 1.83192 1.39882 1.11507 1.18017 0.91178 0.91403 0.90572 0.82820 0.87505 0.90167 0.93356 0.87730 0.93093 0.92396 0.93184 0.94665 0.90496 0.83561 0.82119 0.79237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.35 8.42 71.24 0.60 -2.75 16 2 C 0.05 1.40 5.69 -19.64 -0.11 1.29 16 3 C -0.22 -6.76 8.84 22.47 0.20 -6.57 16 4 C 0.53 22.07 7.31 85.04 0.62 22.69 16 5 O -0.58 -29.60 12.63 -4.60 -0.06 -29.66 16 6 N -0.61 -25.33 2.97 -828.78 -2.46 -27.78 16 7 C 0.10 3.03 6.30 86.36 0.54 3.57 16 8 C -0.13 -3.88 6.08 30.67 0.19 -3.69 16 9 C -0.11 -4.17 5.10 30.62 0.16 -4.02 16 10 C 0.04 2.03 2.26 -11.32 -0.03 2.00 16 11 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 12 C -0.54 -30.30 8.56 25.60 0.22 -30.08 16 13 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 14 C 0.01 0.54 5.30 84.66 0.45 0.99 16 15 N -0.91 -56.56 11.41 21.45 0.24 -56.31 16 16 Si 0.96 44.93 29.54 68.60 2.03 46.96 16 17 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 18 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 19 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 20 C 0.13 6.52 5.44 86.51 0.47 6.99 16 21 C -0.21 -4.72 5.55 22.82 0.13 -4.59 16 22 C -0.11 -2.19 10.25 21.80 0.22 -1.97 16 23 C -0.15 -2.23 10.14 21.08 0.21 -2.02 16 24 C -0.25 -3.37 10.92 66.82 0.73 -2.64 16 25 S 0.20 3.44 23.06 -56.49 -1.30 2.14 16 26 H 0.07 2.34 8.01 -2.39 -0.02 2.32 16 27 H 0.07 2.51 6.23 -2.39 -0.01 2.49 16 28 H 0.08 1.90 8.06 -2.39 -0.02 1.88 16 29 H 0.15 3.75 5.78 -2.91 -0.02 3.73 16 30 H 0.11 2.44 5.36 -2.39 -0.01 2.42 16 31 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.10 2.33 8.14 -2.38 -0.02 2.31 16 34 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 37 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.08 4.69 5.14 -2.39 -0.01 4.68 16 39 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 40 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 41 H 0.19 1.49 8.06 -2.91 -0.02 1.47 16 Total: -1.00 -72.79 342.91 4.08 -68.71 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: 1.03 Total: 16.74 kcal Atomic # 6 Polarization: -25.39 SS G_CDS: 4.60 Total: -20.79 kcal Atomic # 7 Polarization: -81.88 SS G_CDS: -2.21 Total: -84.10 kcal Atomic # 8 Polarization: -29.60 SS G_CDS: -0.06 Total: -29.66 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Atomic # 16 Polarization: 3.44 SS G_CDS: -1.30 Total: 2.14 kcal Total: -72.79 4.08 -68.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857302374.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.722 kcal (2) G-P(sol) polarization free energy of solvation -72.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds