Wall clock time and date at job start Tue Mar 31 2020 08:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.34482 * 126.16132 * 2 1 4 4 C 1.30254 * 108.69892 * 180.02562 * 3 2 1 5 5 O 1.33974 * 108.75831 * 359.73287 * 4 3 2 6 6 C 1.34326 * 126.16724 * 180.02562 * 2 1 3 7 7 C 1.50700 * 126.44324 * 359.97438 * 6 2 1 8 8 O 1.45206 * 109.46838 * 90.00656 * 7 6 2 9 9 C 1.34756 * 116.99549 * 180.02562 * 8 7 6 10 10 O 1.21521 * 120.00483 * 359.97438 * 9 8 7 11 11 C 1.47287 * 119.99472 * 179.97438 * 9 8 7 12 12 C 1.41345 * 126.42877 * 359.96782 * 11 9 8 13 13 N 1.30434 * 108.01067 * 179.77753 * 12 11 9 14 14 N 1.39936 * 108.92067 * 0.38648 * 13 12 11 15 15 C 1.46491 * 125.74228 * 179.87295 * 14 13 12 16 16 C 1.50702 * 109.46957 * 269.68701 * 15 14 13 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99942 * 179.72213 * 16 15 14 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 15 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 15 21 21 H 1.48496 * 109.47341 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.46983 * 120.00379 * 20 18 16 23 23 H 1.48503 * 109.47491 * 240.00192 * 20 18 16 24 24 C 1.34222 * 108.50812 * 359.60423 * 14 13 12 25 25 C 1.50707 * 126.29168 * 180.22885 * 24 14 13 26 26 H 1.08993 * 109.47432 * 269.99692 * 1 2 3 27 27 H 1.09001 * 109.47413 * 29.99874 * 1 2 3 28 28 H 1.09008 * 109.47002 * 149.99627 * 1 2 3 29 29 H 1.08001 * 125.62214 * 180.02562 * 4 3 2 30 30 H 1.09003 * 109.47163 * 330.00413 * 7 6 2 31 31 H 1.09005 * 109.47121 * 210.00101 * 7 6 2 32 32 H 1.07995 * 125.99523 * 359.97438 * 12 11 9 33 33 H 1.09004 * 109.47166 * 149.68967 * 15 14 13 34 34 H 1.08994 * 109.47507 * 29.68673 * 15 14 13 35 35 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 36 36 H 1.08997 * 109.47125 * 90.00227 * 25 24 14 37 37 H 1.08999 * 109.46901 * 210.00195 * 25 24 14 38 38 H 1.09001 * 109.46993 * 329.99753 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3005 1.0857 0.0000 4 6 3.5431 0.6949 -0.0006 5 8 3.5734 -0.6445 0.0050 6 6 2.2997 -1.0844 -0.0005 7 6 1.8493 -2.5225 -0.0006 8 8 1.7044 -2.9842 -1.3697 9 6 1.3045 -4.2589 -1.5463 10 8 1.0835 -4.9655 -0.5826 11 6 1.1354 -4.7956 -2.9074 12 6 1.3526 -4.0984 -4.1176 13 7 1.1015 -4.9144 -5.1037 14 7 0.7088 -6.1513 -4.5804 15 6 0.3385 -7.3329 -5.3632 16 6 -1.1446 -7.3141 -5.6301 17 1 -1.7507 -6.5028 -5.2546 18 6 -1.7269 -8.3294 -6.3590 19 7 -0.9888 -9.3171 -6.8166 20 14 -3.5639 -8.3020 -6.6964 21 1 -4.1629 -7.0923 -6.0776 22 1 -3.7975 -8.2748 -8.1627 23 1 -4.1917 -9.5170 -6.1176 24 6 0.7342 -6.0746 -3.2406 25 6 0.3886 -7.1807 -2.2771 26 1 -0.3634 -0.0001 1.0276 27 1 -0.3634 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5139 29 1 4.4065 1.3436 -0.0003 30 1 0.8916 -2.6034 0.5135 31 1 2.5903 -3.1354 0.5129 32 1 1.6736 -3.0714 -4.2096 33 1 0.5958 -8.2335 -4.8055 34 1 0.8781 -7.3253 -6.3101 35 1 -1.3985 -10.0315 -7.3291 36 1 1.2859 -7.7547 -2.0458 37 1 -0.0142 -6.7509 -1.3600 38 1 -0.3559 -7.8364 -2.7286 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891146908.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:21:53 Heat of formation + Delta-G solvation = 3.928562 kcal Electronic energy + Delta-G solvation = -23913.887422 eV Core-core repulsion = 20145.990760 eV Total energy + Delta-G solvation = -3767.896662 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.64858 -40.95773 -39.71165 -36.34912 -35.45969 -33.97948 -32.65361 -32.17102 -31.30580 -29.19426 -27.66005 -26.82546 -26.01209 -23.65547 -22.69083 -22.31747 -21.12655 -20.41774 -19.01723 -17.60230 -17.54733 -16.89599 -16.76831 -16.40042 -16.25617 -15.37277 -15.02413 -14.57255 -14.42469 -14.20643 -13.54323 -13.47805 -13.33260 -12.98607 -12.90705 -12.57777 -12.53784 -12.29560 -12.15617 -11.88181 -11.59843 -11.29995 -11.16073 -10.96678 -10.96025 -10.67929 -10.49649 -10.36089 -9.98044 -9.93106 -9.07316 -8.76754 -8.69580 -8.14320 -6.39081 -4.47408 0.96132 1.82118 2.21378 2.40058 2.65237 2.95913 3.13963 3.22387 3.26940 3.40268 3.58023 3.83492 4.20143 4.37804 4.51658 4.77437 4.90101 4.96056 5.09435 5.17961 5.26934 5.33565 5.40281 5.45613 5.62737 5.64656 5.76677 5.88861 5.95935 6.04425 6.25831 6.39826 6.59440 6.70094 6.82889 7.07763 7.37654 7.48093 7.66616 7.70607 8.04009 8.28469 8.58494 9.20128 10.69169 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.025989 B = 0.002785 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.137749 B =10049.846667 C =10238.850360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.020 3.980 3 N -0.489 5.489 4 C 0.184 3.816 5 O -0.196 6.196 6 C -0.055 4.055 7 C 0.158 3.842 8 O -0.352 6.352 9 C 0.555 3.445 10 O -0.527 6.527 11 C -0.320 4.320 12 C 0.082 3.918 13 N -0.296 5.296 14 N -0.310 5.310 15 C 0.250 3.750 16 C -0.542 4.542 17 H 0.067 0.933 18 C 0.068 3.932 19 N -0.888 5.888 20 Si 0.909 3.091 21 H -0.270 1.270 22 H -0.279 1.279 23 H -0.279 1.279 24 C 0.175 3.825 25 C -0.101 4.101 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.253 0.747 30 H 0.106 0.894 31 H 0.089 0.911 32 H 0.184 0.816 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.269 0.731 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.543 13.814 14.041 20.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.100 4.100 3 N -0.219 5.219 4 C -0.043 4.043 5 O -0.082 6.082 6 C -0.108 4.108 7 C 0.084 3.916 8 O -0.269 6.269 9 C 0.403 3.597 10 O -0.417 6.417 11 C -0.333 4.333 12 C -0.106 4.106 13 N -0.115 5.115 14 N -0.085 5.085 15 C 0.133 3.867 16 C -0.581 4.581 17 H 0.085 0.915 18 C -0.136 4.136 19 N -0.526 5.526 20 Si 0.735 3.265 21 H -0.195 1.195 22 H -0.205 1.205 23 H -0.205 1.205 24 C 0.037 3.963 25 C -0.159 4.159 26 H 0.096 0.904 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.268 0.732 30 H 0.124 0.876 31 H 0.107 0.893 32 H 0.201 0.799 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.099 0.901 37 H 0.114 0.886 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.251 13.769 12.810 19.818 hybrid contribution -0.438 -0.401 0.600 0.844 sum 5.812 13.369 13.410 19.808 Atomic orbital electron populations 1.20238 0.86081 1.04163 1.03139 1.21631 0.98204 0.87330 1.02871 1.70424 1.01426 1.31573 1.18463 1.28113 0.97648 0.79227 0.99292 1.84439 1.29876 1.24645 1.69290 1.22554 0.81112 0.96579 1.10563 1.20856 1.02402 0.85826 0.82565 1.86623 1.80036 1.30628 1.29662 1.20048 0.72414 0.78384 0.88885 1.90775 1.49741 1.58886 1.42321 1.18779 1.28170 0.95613 0.90730 1.23926 0.98072 0.99578 0.89027 1.77233 1.20388 0.91028 1.22848 1.49455 1.44249 1.11181 1.03656 1.19927 0.97417 0.77553 0.91836 1.21288 0.91354 1.09216 1.36220 0.91490 1.24932 0.99361 0.94714 0.94626 1.69922 1.36154 1.11018 1.35471 0.86256 0.83565 0.78315 0.78330 1.19467 1.20522 1.20511 1.21458 0.93462 0.95139 0.86269 1.20680 1.02889 0.95079 0.97297 0.90366 0.90103 0.90110 0.73172 0.87647 0.89261 0.79881 0.92388 0.92248 0.92084 0.90117 0.88614 0.89409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.70 10.05 36.01 0.36 -0.34 16 2 C 0.02 0.22 7.11 -82.81 -0.59 -0.37 16 3 N -0.49 -5.50 11.29 -11.17 -0.13 -5.62 16 4 C 0.18 1.57 13.23 52.09 0.69 2.26 16 5 O -0.20 -2.11 10.78 5.36 0.06 -2.06 16 6 C -0.06 -0.63 7.03 -35.69 -0.25 -0.88 16 7 C 0.16 1.78 5.63 36.01 0.20 1.98 16 8 O -0.35 -5.00 10.05 -40.64 -0.41 -5.41 16 9 C 0.55 9.09 7.95 34.41 0.27 9.37 16 10 O -0.53 -9.06 14.63 -19.28 -0.28 -9.34 16 11 C -0.32 -5.83 6.13 -105.08 -0.64 -6.48 16 12 C 0.08 1.47 11.87 -16.96 -0.20 1.27 16 13 N -0.30 -6.35 12.50 30.87 0.39 -5.96 16 14 N -0.31 -6.83 3.56 -57.76 -0.21 -7.04 16 15 C 0.25 6.03 5.78 -5.20 -0.03 6.00 16 16 C -0.54 -14.24 9.39 -34.44 -0.32 -14.57 16 17 H 0.07 1.81 7.81 -52.49 -0.41 1.40 16 18 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 19 N -0.89 -24.07 13.29 55.43 0.74 -23.33 16 20 Si 0.91 20.38 29.54 -169.99 -5.02 15.36 16 21 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 22 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 24 C 0.18 3.43 7.01 -81.58 -0.57 2.86 16 25 C -0.10 -1.70 9.34 36.01 0.34 -1.37 16 26 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.08 0.70 7.79 -51.92 -0.40 0.29 16 29 H 0.25 0.78 8.06 -52.49 -0.42 0.35 16 30 H 0.11 1.02 7.79 -51.93 -0.40 0.62 16 31 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.18 2.66 8.06 -52.49 -0.42 2.23 16 33 H 0.06 1.38 7.62 -51.93 -0.40 0.98 16 34 H 0.06 1.53 8.14 -51.93 -0.42 1.11 16 35 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 36 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.10 1.54 6.50 -51.93 -0.34 1.20 16 38 H 0.09 1.53 7.70 -51.93 -0.40 1.13 16 LS Contribution 343.26 15.07 5.17 5.17 Total: -1.00 -31.49 343.26 -4.98 -36.47 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -4.45 Total: 0.32 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: -0.84 Total: 1.43 kcal Atomic # 7 Polarization: -42.74 SS G_CDS: 0.79 Total: -41.95 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: -0.63 Total: -16.81 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.49 -4.98 -36.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891146908.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.397 kcal (2) G-P(sol) polarization free energy of solvation -31.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds