Wall clock time and date at job start Tue Mar 31 2020 08:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.34482 * 126.16132 * 2 1 4 4 C 1.30254 * 108.69892 * 180.02562 * 3 2 1 5 5 O 1.33974 * 108.75831 * 359.73287 * 4 3 2 6 6 C 1.34326 * 126.16724 * 180.02562 * 2 1 3 7 7 C 1.50700 * 126.44324 * 359.97438 * 6 2 1 8 8 O 1.45206 * 109.46838 * 90.00656 * 7 6 2 9 9 C 1.34756 * 116.99549 * 180.02562 * 8 7 6 10 10 O 1.21521 * 120.00483 * 359.97438 * 9 8 7 11 11 C 1.47287 * 119.99472 * 179.97438 * 9 8 7 12 12 C 1.41345 * 126.42877 * 359.96782 * 11 9 8 13 13 N 1.30434 * 108.01067 * 179.77753 * 12 11 9 14 14 N 1.39936 * 108.92067 * 0.38648 * 13 12 11 15 15 C 1.46491 * 125.74228 * 179.87295 * 14 13 12 16 16 C 1.50702 * 109.46957 * 269.68701 * 15 14 13 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99942 * 179.72213 * 16 15 14 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 15 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 15 21 21 H 1.48496 * 109.47341 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.46983 * 120.00379 * 20 18 16 23 23 H 1.48503 * 109.47491 * 240.00192 * 20 18 16 24 24 C 1.34222 * 108.50812 * 359.60423 * 14 13 12 25 25 C 1.50707 * 126.29168 * 180.22885 * 24 14 13 26 26 H 1.08993 * 109.47432 * 269.99692 * 1 2 3 27 27 H 1.09001 * 109.47413 * 29.99874 * 1 2 3 28 28 H 1.09008 * 109.47002 * 149.99627 * 1 2 3 29 29 H 1.08001 * 125.62214 * 180.02562 * 4 3 2 30 30 H 1.09003 * 109.47163 * 330.00413 * 7 6 2 31 31 H 1.09005 * 109.47121 * 210.00101 * 7 6 2 32 32 H 1.07995 * 125.99523 * 359.97438 * 12 11 9 33 33 H 1.09004 * 109.47166 * 149.68967 * 15 14 13 34 34 H 1.08994 * 109.47507 * 29.68673 * 15 14 13 35 35 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 36 36 H 1.08997 * 109.47125 * 90.00227 * 25 24 14 37 37 H 1.08999 * 109.46901 * 210.00195 * 25 24 14 38 38 H 1.09001 * 109.46993 * 329.99753 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3005 1.0857 0.0000 4 6 3.5431 0.6949 -0.0006 5 8 3.5734 -0.6445 0.0050 6 6 2.2997 -1.0844 -0.0005 7 6 1.8493 -2.5225 -0.0006 8 8 1.7044 -2.9842 -1.3697 9 6 1.3045 -4.2589 -1.5463 10 8 1.0835 -4.9655 -0.5826 11 6 1.1354 -4.7956 -2.9074 12 6 1.3526 -4.0984 -4.1176 13 7 1.1015 -4.9144 -5.1037 14 7 0.7088 -6.1513 -4.5804 15 6 0.3385 -7.3329 -5.3632 16 6 -1.1446 -7.3141 -5.6301 17 1 -1.7507 -6.5028 -5.2546 18 6 -1.7269 -8.3294 -6.3590 19 7 -0.9888 -9.3171 -6.8166 20 14 -3.5639 -8.3020 -6.6964 21 1 -4.1629 -7.0923 -6.0776 22 1 -3.7975 -8.2748 -8.1627 23 1 -4.1917 -9.5170 -6.1176 24 6 0.7342 -6.0746 -3.2406 25 6 0.3886 -7.1807 -2.2771 26 1 -0.3634 -0.0001 1.0276 27 1 -0.3634 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5139 29 1 4.4065 1.3436 -0.0003 30 1 0.8916 -2.6034 0.5135 31 1 2.5903 -3.1354 0.5129 32 1 1.6736 -3.0714 -4.2096 33 1 0.5958 -8.2335 -4.8055 34 1 0.8781 -7.3253 -6.3101 35 1 -1.3985 -10.0315 -7.3291 36 1 1.2859 -7.7547 -2.0458 37 1 -0.0142 -6.7509 -1.3600 38 1 -0.3559 -7.8364 -2.7286 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891146908.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:21:52 Heat of formation + Delta-G solvation = -16.962878 kcal Electronic energy + Delta-G solvation = -23914.793343 eV Core-core repulsion = 20145.990760 eV Total energy + Delta-G solvation = -3768.802583 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -44.40150 -42.44582 -40.97437 -37.54735 -36.23109 -35.84256 -33.94220 -33.43217 -32.83227 -30.14067 -29.20629 -28.33469 -26.88666 -25.43679 -23.92369 -23.24573 -21.99885 -21.76191 -20.52839 -18.97232 -18.75897 -18.38699 -17.74311 -17.48822 -17.29484 -16.89116 -16.34683 -16.07680 -15.72717 -15.35925 -14.92861 -14.46099 -14.32514 -14.19823 -14.15477 -13.87228 -13.66795 -13.63801 -13.58748 -13.14744 -13.04040 -12.98857 -12.72455 -12.33809 -12.06074 -11.92549 -11.88435 -11.84341 -11.54861 -11.35206 -10.76572 -10.33607 -9.86271 -9.68484 -8.38719 -6.54844 0.16021 0.40585 1.16261 1.34691 1.37266 1.40062 1.51180 1.63232 1.68719 2.14352 2.20406 2.32993 2.94248 3.24799 3.55757 3.66108 3.74918 3.76324 3.93781 4.00487 4.12199 4.23434 4.52703 4.57744 4.65388 4.69650 4.73785 4.78116 4.87220 4.91683 4.96873 5.10100 5.11440 5.31369 5.36660 5.48736 5.57813 5.73278 5.96231 6.53881 6.63812 6.69596 6.83123 7.16657 8.69590 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.025989 B = 0.002785 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.137749 B =10049.846667 C =10238.850360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.014 3.986 3 N -0.524 5.524 4 C 0.203 3.797 5 O -0.208 6.208 6 C -0.078 4.078 7 C 0.157 3.843 8 O -0.352 6.352 9 C 0.564 3.436 10 O -0.534 6.534 11 C -0.322 4.322 12 C 0.096 3.904 13 N -0.335 5.335 14 N -0.333 5.333 15 C 0.265 3.735 16 C -0.556 4.556 17 H 0.053 0.947 18 C 0.025 3.975 19 N -0.916 5.916 20 Si 0.971 3.029 21 H -0.272 1.272 22 H -0.275 1.275 23 H -0.268 1.268 24 C 0.165 3.835 25 C -0.095 4.095 26 H 0.094 0.906 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.299 0.701 30 H 0.121 0.879 31 H 0.096 0.904 32 H 0.219 0.781 33 H 0.057 0.943 34 H 0.033 0.967 35 H 0.275 0.725 36 H 0.099 0.901 37 H 0.105 0.895 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.502 15.134 15.333 22.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.105 4.105 3 N -0.254 5.254 4 C -0.022 4.022 5 O -0.095 6.095 6 C -0.130 4.130 7 C 0.084 3.916 8 O -0.269 6.269 9 C 0.412 3.588 10 O -0.426 6.426 11 C -0.335 4.335 12 C -0.091 4.091 13 N -0.154 5.154 14 N -0.109 5.109 15 C 0.147 3.853 16 C -0.595 4.595 17 H 0.072 0.928 18 C -0.176 4.176 19 N -0.554 5.554 20 Si 0.795 3.205 21 H -0.196 1.196 22 H -0.201 1.201 23 H -0.193 1.193 24 C 0.028 3.972 25 C -0.153 4.153 26 H 0.112 0.888 27 H 0.100 0.900 28 H 0.099 0.901 29 H 0.314 0.686 30 H 0.139 0.861 31 H 0.114 0.886 32 H 0.235 0.765 33 H 0.075 0.925 34 H 0.052 0.948 35 H 0.084 0.916 36 H 0.117 0.883 37 H 0.123 0.877 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.214 15.106 14.123 21.593 hybrid contribution -0.304 -0.630 0.296 0.759 sum 5.910 14.476 14.419 21.270 Atomic orbital electron populations 1.20318 0.84998 1.04173 1.04204 1.22005 0.99178 0.87416 1.01934 1.70463 1.02604 1.31947 1.20370 1.29259 0.98342 0.78793 0.95815 1.84444 1.29708 1.25704 1.69657 1.22501 0.81492 0.96485 1.12559 1.21075 1.03551 0.86074 0.80922 1.86584 1.79368 1.29124 1.31854 1.19638 0.72277 0.79032 0.87860 1.90769 1.50059 1.59410 1.42346 1.19005 1.27399 0.95156 0.91954 1.24486 0.95992 1.00384 0.88241 1.77181 1.22318 0.91405 1.24536 1.49202 1.46285 1.11052 1.04394 1.19467 0.96097 0.78676 0.91034 1.21425 0.92387 1.09013 1.36627 0.92843 1.25710 1.03520 0.94225 0.94177 1.69998 1.37904 1.11563 1.35898 0.85302 0.78495 0.78471 0.78210 1.19635 1.20068 1.19276 1.21985 0.93045 0.96523 0.85663 1.20720 1.03438 0.94388 0.96777 0.88757 0.90041 0.90085 0.68570 0.86129 0.88611 0.76503 0.92531 0.94844 0.91622 0.88273 0.87692 0.90481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.29 10.05 71.24 0.72 -0.57 16 2 C 0.01 0.30 7.11 41.26 0.29 0.59 16 3 N -0.52 -10.78 11.29 -304.06 -3.43 -14.21 16 4 C 0.20 2.94 13.23 130.48 1.73 4.67 16 5 O -0.21 -4.06 10.78 -3.74 -0.04 -4.10 16 6 C -0.08 -1.64 7.03 24.79 0.17 -1.47 16 7 C 0.16 3.26 5.63 71.24 0.40 3.66 16 8 O -0.35 -9.35 10.05 -56.67 -0.57 -9.92 16 9 C 0.56 17.57 7.95 70.20 0.56 18.13 16 10 O -0.53 -17.43 14.63 19.77 0.29 -17.14 16 11 C -0.32 -11.43 6.13 -20.16 -0.12 -11.56 16 12 C 0.10 3.39 11.87 85.66 1.02 4.40 16 13 N -0.34 -14.51 12.50 -56.25 -0.70 -15.21 16 14 N -0.33 -14.99 3.56 -336.67 -1.20 -16.18 16 15 C 0.27 13.27 5.78 85.64 0.50 13.77 16 16 C -0.56 -29.84 9.39 25.60 0.24 -29.59 16 17 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 18 C 0.03 1.33 5.46 84.66 0.46 1.80 16 19 N -0.92 -50.10 13.29 21.45 0.28 -49.82 16 20 Si 0.97 41.74 29.54 68.60 2.03 43.76 16 21 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 22 H -0.28 -11.58 7.11 99.48 0.71 -10.88 16 23 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 24 C 0.16 6.43 7.01 42.17 0.30 6.73 16 25 C -0.10 -3.16 9.34 71.24 0.67 -2.49 16 26 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.08 1.28 7.79 -2.38 -0.02 1.26 16 29 H 0.30 0.68 8.06 -2.91 -0.02 0.66 16 30 H 0.12 2.10 7.79 -2.39 -0.02 2.09 16 31 H 0.10 1.86 8.14 -2.38 -0.02 1.84 16 32 H 0.22 5.84 8.06 -2.91 -0.02 5.82 16 33 H 0.06 2.79 7.62 -2.38 -0.02 2.77 16 34 H 0.03 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.27 14.01 8.31 -92.70 -0.77 13.24 16 36 H 0.10 2.88 8.14 -2.39 -0.02 2.86 16 37 H 0.10 3.26 6.50 -2.39 -0.02 3.25 16 38 H 0.08 2.71 7.70 -2.39 -0.02 2.69 16 Total: -1.00 -67.87 343.26 4.67 -63.20 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: 1.09 Total: 11.56 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: 6.92 Total: 8.06 kcal Atomic # 7 Polarization: -90.38 SS G_CDS: -5.05 Total: -95.43 kcal Atomic # 8 Polarization: -30.84 SS G_CDS: -0.32 Total: -31.16 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.76 kcal Total: -67.87 4.67 -63.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891146908.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.234 kcal (2) G-P(sol) polarization free energy of solvation -67.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds