Wall clock time and date at job start Tue Mar 31 2020 08:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.41386 * 126.80425 * 2 1 4 4 C 1.35450 * 103.98732 * 180.02562 * 3 2 1 5 5 C 1.50699 * 126.77250 * 179.97438 * 4 3 2 6 6 O 1.45206 * 109.46636 * 90.00615 * 5 4 3 7 7 C 1.34757 * 116.99425 * 179.97438 * 6 5 4 8 8 O 1.21521 * 120.00224 * 359.97438 * 7 6 5 9 9 C 1.47292 * 119.99524 * 179.97438 * 7 6 5 10 10 C 1.41337 * 126.42906 * 359.96177 * 9 7 6 11 11 N 1.30428 * 108.01460 * 180.02562 * 10 9 7 12 12 N 1.39929 * 108.91523 * 359.76470 * 11 10 9 13 13 C 1.46504 * 125.73875 * 180.24470 * 12 11 10 14 14 C 1.50697 * 109.47417 * 270.16707 * 13 12 11 15 15 H 1.08000 * 119.99772 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00059 * 179.97438 * 14 13 12 17 17 N 1.31508 * 120.00404 * 180.02562 * 16 14 13 18 18 Si 1.86802 * 119.99988 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47515 * 89.99394 * 18 16 14 20 20 H 1.48496 * 109.47023 * 209.99617 * 18 16 14 21 21 H 1.48504 * 109.47023 * 329.99562 * 18 16 14 22 22 C 1.34214 * 108.51495 * 0.39399 * 12 11 10 23 23 C 1.50706 * 126.29775 * 179.88038 * 22 12 11 24 24 O 1.34042 * 106.44784 * 0.24183 * 4 3 2 25 25 N 1.20925 * 111.56349 * 359.56285 * 24 4 3 26 26 H 1.09003 * 109.46898 * 90.00208 * 1 2 3 27 27 H 1.08997 * 109.47305 * 209.99753 * 1 2 3 28 28 H 1.08998 * 109.47390 * 330.00133 * 1 2 3 29 29 H 1.08001 * 128.00234 * 0.03338 * 3 2 1 30 30 H 1.08997 * 109.47685 * 330.00269 * 5 4 3 31 31 H 1.09002 * 109.46715 * 209.99745 * 5 4 3 32 32 H 1.08008 * 125.99227 * 0.03114 * 10 9 7 33 33 H 1.09002 * 109.47134 * 30.17321 * 13 12 11 34 34 H 1.09002 * 109.46693 * 150.16903 * 13 12 11 35 35 H 0.96997 * 120.00367 * 180.02562 * 17 16 14 36 36 H 1.08999 * 109.46995 * 269.71154 * 23 22 12 37 37 H 1.08994 * 109.46790 * 29.70841 * 23 22 12 38 38 H 1.08997 * 109.47305 * 149.71282 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3540 1.1321 0.0000 4 6 3.6025 0.6068 -0.0006 5 6 4.9021 1.3696 -0.0014 6 8 5.3203 1.6146 1.3674 7 6 6.4728 2.2904 1.5432 8 8 7.1111 2.6643 0.5792 9 6 6.9588 2.5759 2.9041 10 6 6.3289 2.2080 4.1146 11 7 7.0654 2.6405 5.1003 12 7 8.1878 3.2914 4.5762 13 6 9.2597 3.9124 5.3583 14 6 8.9129 5.3534 5.6306 15 1 7.9864 5.7654 5.2587 16 6 9.7778 6.1456 6.3554 17 7 9.4750 7.4029 6.5935 18 14 11.3800 5.4328 6.9993 19 1 12.4490 5.6231 5.9863 20 1 11.7602 6.1258 8.2564 21 1 11.2043 3.9826 7.2671 22 6 8.1153 3.2539 3.2365 23 6 9.1153 3.8384 2.2723 24 8 3.4538 -0.7253 -0.0063 25 7 2.2868 -1.0423 -0.0005 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5138 29 1 2.0709 2.1743 0.0005 30 1 4.7648 2.3210 -0.5152 31 1 5.6657 0.7858 -0.5155 32 1 5.4004 1.6639 4.2072 33 1 9.3745 3.3814 6.3033 34 1 10.1935 3.8631 4.7981 35 1 10.0836 7.9603 7.1031 36 1 8.8371 4.8661 2.0389 37 1 10.1070 3.8241 2.7243 38 1 9.1248 3.2477 1.3563 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893017191.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:14 Heat of formation + Delta-G solvation = 28.468747 kcal Electronic energy + Delta-G solvation = -23671.363953 eV Core-core repulsion = 19904.531433 eV Total energy + Delta-G solvation = -3766.832520 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -45.99571 -42.47118 -40.99208 -37.57362 -35.81249 -35.78706 -34.10412 -33.76161 -32.94766 -30.04739 -29.59678 -28.71499 -27.84632 -25.12080 -24.17046 -23.80532 -21.84747 -21.27357 -20.48876 -19.28677 -19.00527 -18.62662 -18.40398 -17.52162 -17.33505 -16.82160 -16.41349 -15.85276 -15.66007 -15.24248 -14.81549 -14.50141 -14.42114 -14.18483 -14.06367 -14.01626 -13.83967 -13.75499 -13.70689 -13.20064 -13.17342 -13.06770 -12.55426 -12.33646 -12.16587 -11.86754 -11.84623 -11.68876 -11.39626 -11.00658 -10.90768 -10.61864 -10.34069 -9.67825 -8.42240 -6.54660 0.13562 0.39375 1.11752 1.15647 1.35256 1.35903 1.45151 1.51264 1.77449 2.20258 2.23811 2.25657 2.90320 3.22484 3.33223 3.63459 3.71829 3.90423 3.95281 4.01660 4.12638 4.23396 4.37463 4.40553 4.52854 4.54661 4.69878 4.70593 4.70679 4.86257 4.88528 4.95944 5.08168 5.17321 5.23377 5.30743 5.54172 5.78161 6.17012 6.48522 6.66168 6.82402 7.09301 7.17614 8.74004 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.031683 B = 0.002589 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.528730 B =10811.961259 C =11074.832908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.009 3.991 3 C -0.195 4.195 4 C -0.042 4.042 5 C 0.150 3.850 6 O -0.352 6.352 7 C 0.566 3.434 8 O -0.533 6.533 9 C -0.321 4.321 10 C 0.098 3.902 11 N -0.333 5.333 12 N -0.333 5.333 13 C 0.231 3.769 14 C -0.554 4.554 15 H 0.028 0.972 16 C 0.024 3.976 17 N -0.934 5.934 18 Si 0.947 3.053 19 H -0.250 1.250 20 H -0.280 1.280 21 H -0.242 1.242 22 C 0.166 3.834 23 C -0.094 4.094 24 O 0.088 5.912 25 N -0.389 5.389 26 H 0.096 0.904 27 H 0.076 0.924 28 H 0.103 0.897 29 H 0.203 0.797 30 H 0.127 0.873 31 H 0.105 0.895 32 H 0.220 0.780 33 H 0.058 0.942 34 H 0.077 0.923 35 H 0.274 0.726 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.507 -12.928 -14.758 22.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.149 4.149 3 C -0.216 4.216 4 C -0.106 4.106 5 C 0.076 3.924 6 O -0.269 6.269 7 C 0.413 3.587 8 O -0.424 6.424 9 C -0.334 4.334 10 C -0.090 4.090 11 N -0.152 5.152 12 N -0.109 5.109 13 C 0.112 3.888 14 C -0.592 4.592 15 H 0.046 0.954 16 C -0.176 4.176 17 N -0.572 5.572 18 Si 0.768 3.232 19 H -0.174 1.174 20 H -0.205 1.205 21 H -0.166 1.166 22 C 0.030 3.970 23 C -0.152 4.152 24 O 0.023 5.977 25 N -0.096 5.096 26 H 0.115 0.885 27 H 0.094 0.906 28 H 0.122 0.878 29 H 0.220 0.780 30 H 0.145 0.855 31 H 0.123 0.877 32 H 0.236 0.764 33 H 0.076 0.924 34 H 0.095 0.905 35 H 0.084 0.916 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -10.266 -13.848 -13.568 21.937 hybrid contribution 0.251 1.039 -0.248 1.097 sum -10.015 -12.809 -13.816 21.336 Atomic orbital electron populations 1.20357 0.83367 1.04954 1.04704 1.24295 1.00779 0.88369 1.01481 1.22955 0.90215 1.02597 1.05828 1.24032 0.97730 0.83594 1.05211 1.21222 0.90035 1.00119 0.81041 1.86557 1.39306 1.69272 1.31720 1.19587 0.77672 0.73607 0.87808 1.90778 1.57388 1.51979 1.42234 1.19011 1.01698 1.20649 0.92030 1.24517 0.99564 0.96661 0.88243 1.77182 0.97438 1.16166 1.24442 1.48844 1.18134 1.39649 1.04294 1.19992 0.83990 0.92108 0.92697 1.21165 1.06668 0.94299 1.37053 0.95359 1.25796 1.02339 0.94707 0.94774 1.70014 1.39139 1.08027 1.40027 0.85725 0.78464 0.80034 0.78941 1.17402 1.20509 1.16568 1.22003 0.96144 0.93264 0.85587 1.20732 0.95727 1.01837 0.96924 1.84808 1.21764 1.23338 1.67828 1.73876 0.89655 1.25476 1.20589 0.88548 0.90553 0.87843 0.78006 0.85504 0.87698 0.76362 0.92424 0.90492 0.91639 0.89538 0.89511 0.87220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.78 10.47 71.23 0.75 -0.04 16 2 C 0.01 0.16 7.33 43.58 0.32 0.48 16 3 C -0.20 -3.10 11.06 22.40 0.25 -2.85 16 4 C -0.04 -0.80 7.13 25.04 0.18 -0.63 16 5 C 0.15 2.70 6.04 71.24 0.43 3.13 16 6 O -0.35 -8.64 10.05 -56.68 -0.57 -9.21 16 7 C 0.57 16.72 7.95 70.20 0.56 17.28 16 8 O -0.53 -16.52 14.63 19.77 0.29 -16.23 16 9 C -0.32 -10.94 6.13 -20.16 -0.12 -11.06 16 10 C 0.10 3.31 11.87 85.66 1.02 4.33 16 11 N -0.33 -13.88 12.50 -56.25 -0.70 -14.59 16 12 N -0.33 -14.18 3.56 -336.65 -1.20 -15.38 16 13 C 0.23 10.28 5.03 85.63 0.43 10.71 16 14 C -0.55 -30.24 9.94 25.60 0.25 -29.99 16 15 H 0.03 1.80 8.06 -2.91 -0.02 1.77 16 16 C 0.02 1.31 5.47 84.66 0.46 1.77 16 17 N -0.93 -55.13 13.96 21.45 0.30 -54.83 16 18 Si 0.95 39.02 27.47 68.60 1.88 40.90 16 19 H -0.25 -9.50 7.11 99.48 0.71 -8.79 16 20 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 21 H -0.24 -9.12 6.54 99.48 0.65 -8.47 16 22 C 0.17 6.20 7.01 42.17 0.30 6.49 16 23 C -0.09 -2.93 9.57 71.24 0.68 -2.25 16 24 O 0.09 2.05 11.20 71.61 0.80 2.85 16 25 N -0.39 -9.15 12.07 -49.54 -0.60 -9.74 16 26 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.10 0.65 8.14 -2.39 -0.02 0.64 16 29 H 0.20 1.97 8.06 -2.91 -0.02 1.95 16 30 H 0.13 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.22 5.61 8.06 -2.91 -0.02 5.58 16 33 H 0.06 2.54 7.20 -2.39 -0.02 2.52 16 34 H 0.08 2.98 6.44 -2.39 -0.02 2.96 16 35 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 36 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 37 H 0.09 2.46 7.04 -2.39 -0.02 2.44 16 38 H 0.11 3.06 6.50 -2.39 -0.02 3.05 16 Total: -1.00 -70.94 339.69 6.75 -64.19 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: 1.04 Total: 14.66 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: 5.50 Total: -2.62 kcal Atomic # 7 Polarization: -92.34 SS G_CDS: -2.20 Total: -94.54 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: 0.52 Total: -22.59 kcal Atomic # 14 Polarization: 39.02 SS G_CDS: 1.88 Total: 40.90 kcal Total: -70.94 6.75 -64.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893017191.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.663 kcal (2) G-P(sol) polarization free energy of solvation -70.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds