Wall clock time and date at job start Tue Mar 31 2020 08:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33137 * 120.00033 * 2 1 4 4 F 1.35102 * 120.00203 * 353.51228 * 3 2 1 5 5 C 1.47260 * 120.00121 * 173.51498 * 3 2 1 6 6 O 1.21620 * 119.99638 * 5.66734 * 5 3 2 7 7 N 1.34768 * 120.00392 * 185.67363 * 5 3 2 8 8 C 1.39829 * 120.00351 * 172.73228 * 7 5 3 9 9 C 1.38983 * 120.04030 * 319.82698 * 8 7 5 10 10 C 1.38155 * 120.06765 * 180.02562 * 9 8 7 11 11 C 1.38175 * 120.13624 * 359.70239 * 10 9 8 12 12 C 1.38911 * 120.07825 * 0.55316 * 11 10 9 13 13 O 1.35745 * 120.03340 * 179.74309 * 12 11 10 14 14 C 1.34830 * 117.00351 * 173.29255 * 13 12 11 15 15 H 1.08003 * 119.99675 * 5.10099 * 14 13 12 16 16 C 1.38653 * 120.00257 * 185.10460 * 14 13 12 17 17 N 1.31554 * 120.00132 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99876 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47416 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.47218 * 119.99660 * 18 16 14 21 21 H 1.48501 * 109.47535 * 239.99795 * 18 16 14 22 22 C 1.38741 * 120.03566 * 139.85142 * 8 7 5 23 23 C 1.50708 * 119.99953 * 180.02562 * 2 1 3 24 24 C 1.53002 * 117.49765 * 359.74006 * 23 2 1 25 25 C 1.53001 * 117.49747 * 291.08028 * 23 2 1 26 26 H 1.09000 * 109.46961 * 90.00068 * 1 2 3 27 27 H 1.08998 * 109.47151 * 209.99789 * 1 2 3 28 28 H 1.08997 * 109.47110 * 329.99719 * 1 2 3 29 29 H 0.97004 * 119.99740 * 352.73592 * 7 5 3 30 30 H 1.07998 * 119.96668 * 0.02661 * 9 8 7 31 31 H 1.07994 * 119.92886 * 179.97438 * 10 9 8 32 32 H 1.08002 * 119.95776 * 180.29639 * 11 10 9 33 33 H 0.96993 * 119.99856 * 180.02562 * 17 16 14 34 34 H 1.07994 * 120.07375 * 359.97438 * 22 8 7 35 35 H 1.08996 * 115.55099 * 145.41198 * 23 2 1 36 36 H 1.08998 * 117.49783 * 0.02562 * 24 23 2 37 37 H 1.09000 * 117.49921 * 145.02295 * 24 23 2 38 38 H 1.08992 * 117.49774 * 214.97958 * 25 23 2 39 39 H 1.09002 * 117.49782 * 0.02562 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1727 1.1530 0.0000 4 9 1.5037 2.3193 -0.1322 5 6 3.6382 1.1571 0.1440 6 8 4.2506 0.1064 0.1594 7 7 4.3008 2.3250 0.2590 8 6 5.6690 2.3272 0.5475 9 6 6.1872 1.4253 1.4692 10 6 7.5389 1.4273 1.7551 11 6 8.3806 2.3213 1.1214 12 6 7.8681 3.2289 0.2031 13 8 8.6951 4.1102 -0.4150 14 6 8.1608 4.8678 -1.3941 15 1 7.1016 4.8171 -1.5989 16 6 8.9712 5.7117 -2.1381 17 7 10.2613 5.7738 -1.8884 18 14 8.2310 6.7607 -3.4950 19 1 6.7696 6.5090 -3.5739 20 1 8.4701 8.1958 -3.1976 21 1 8.8645 6.4117 -4.7920 22 6 6.5108 3.2301 -0.0858 23 6 2.2605 -1.3052 -0.0006 24 6 1.4384 -2.5955 0.0050 25 6 2.1910 -2.1616 1.2654 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8899 0.5139 29 1 3.8285 3.1641 0.1417 30 1 5.5326 0.7221 1.9626 31 1 7.9391 0.7258 2.4720 32 1 9.4375 2.3172 1.3435 33 1 10.8281 6.3644 -2.4087 34 1 6.1108 3.9320 -0.8025 35 1 3.1967 -1.3073 -0.5588 36 1 0.3526 -2.5004 0.0087 37 1 1.8339 -3.4467 -0.5493 38 1 3.0812 -2.7274 1.5397 39 1 1.5999 -1.7812 2.0985 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900237329.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:50:49 Heat of formation + Delta-G solvation = -32.989504 kcal Electronic energy + Delta-G solvation = -24097.941618 eV Core-core repulsion = 20308.524107 eV Total energy + Delta-G solvation = -3789.417511 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.06277 -40.31436 -38.90832 -37.95877 -36.43453 -34.28894 -33.16782 -32.25911 -29.69008 -28.90056 -27.92007 -25.35730 -24.03210 -22.56488 -22.14525 -21.84647 -20.46129 -19.34346 -18.19235 -17.84034 -17.31116 -16.80907 -16.09756 -15.52652 -15.23000 -15.07509 -14.66623 -14.54905 -14.28453 -14.08092 -13.91521 -13.57604 -13.45194 -13.08154 -12.84795 -12.65616 -12.41833 -11.86711 -11.77947 -11.56206 -11.54058 -11.18619 -11.08879 -10.91245 -10.81724 -10.74428 -10.45312 -9.82376 -9.57761 -9.38177 -8.95250 -8.83072 -7.81548 -7.22140 -6.46823 -4.06644 0.84012 2.00857 2.33293 3.00351 3.03750 3.11717 3.13252 3.17890 3.70219 3.94739 4.00459 4.34855 4.51640 4.55105 4.75518 4.87393 4.88842 5.05828 5.16006 5.19253 5.26522 5.40466 5.53945 5.64271 5.66997 5.74480 5.90548 5.92190 5.97706 6.06700 6.16673 6.25713 6.29617 6.59540 6.92329 6.93193 7.09636 7.24252 7.38469 7.57772 7.73740 7.97202 8.14090 8.98709 9.67826 10.71164 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.018789 B = 0.003389 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.838859 B = 8261.120158 C = 9276.886505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.042 4.042 3 C -0.015 4.015 4 F -0.136 7.136 5 C 0.547 3.453 6 O -0.496 6.496 7 N -0.662 5.662 8 C 0.178 3.822 9 C -0.200 4.200 10 C -0.063 4.063 11 C -0.196 4.196 12 C 0.167 3.833 13 O -0.175 6.175 14 C -0.393 4.393 15 H 0.091 0.909 16 C 0.040 3.960 17 N -0.861 5.861 18 Si 0.940 3.060 19 H -0.267 1.267 20 H -0.276 1.276 21 H -0.275 1.275 22 C -0.250 4.250 23 C -0.119 4.119 24 C -0.183 4.183 25 C -0.156 4.156 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.410 0.590 30 H 0.113 0.887 31 H 0.117 0.883 32 H 0.119 0.881 33 H 0.270 0.730 34 H 0.131 0.869 35 H 0.147 0.853 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.543 -11.120 4.380 22.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.045 4.045 3 C -0.037 4.037 4 F -0.115 7.115 5 C 0.334 3.666 6 O -0.373 6.373 7 N -0.307 5.307 8 C 0.086 3.914 9 C -0.221 4.221 10 C -0.082 4.082 11 C -0.215 4.215 12 C 0.113 3.887 13 O -0.079 6.079 14 C -0.469 4.469 15 H 0.109 0.891 16 C -0.164 4.164 17 N -0.496 5.496 18 Si 0.765 3.235 19 H -0.192 1.192 20 H -0.201 1.201 21 H -0.201 1.201 22 C -0.271 4.271 23 C -0.137 4.137 24 C -0.220 4.220 25 C -0.193 4.193 26 H 0.102 0.898 27 H 0.097 0.903 28 H 0.093 0.907 29 H 0.246 0.754 30 H 0.131 0.869 31 H 0.135 0.865 32 H 0.137 0.863 33 H 0.080 0.920 34 H 0.148 0.852 35 H 0.164 0.836 36 H 0.114 0.886 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -17.711 -11.625 4.336 21.625 hybrid contribution -0.829 1.345 -0.839 1.789 sum -18.540 -10.280 3.497 21.486 Atomic orbital electron populations 1.20934 0.90159 1.03698 1.03480 1.21924 0.96227 0.92721 0.93616 1.19296 0.89684 0.81868 1.12883 1.91469 1.79930 1.46400 1.93706 1.18211 0.86250 0.84496 0.77646 1.90795 1.67480 1.30276 1.48700 1.43343 1.08731 1.08936 1.69689 1.17322 0.81227 0.97624 0.95230 1.20421 0.95821 1.03413 1.02447 1.20506 0.92540 0.97138 0.98036 1.20278 1.00040 0.98937 1.02292 1.19071 0.88780 0.88999 0.91842 1.84002 1.35345 1.43563 1.44943 1.21340 0.94428 1.20270 1.10861 0.89143 1.25278 0.95248 0.97638 0.98269 1.70042 1.03839 1.36510 1.39242 0.85658 0.78955 0.79161 0.79711 1.19154 1.20111 1.20099 1.20890 0.93374 1.05992 1.06846 1.21458 1.01208 0.86927 1.04095 1.23143 0.98798 0.98044 1.02037 1.22884 1.02742 1.02397 0.91268 0.89816 0.90252 0.90660 0.75429 0.86930 0.86501 0.86251 0.92032 0.85158 0.83600 0.88576 0.88304 0.88100 0.88967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.96 9.29 36.01 0.33 -0.63 16 2 C -0.04 -0.45 5.81 -101.12 -0.59 -1.04 16 3 C -0.02 -0.19 7.34 -37.69 -0.28 -0.47 16 4 F -0.14 -1.65 15.91 2.25 0.04 -1.62 16 5 C 0.55 8.44 7.40 -12.60 -0.09 8.34 16 6 O -0.50 -8.58 11.39 5.26 0.06 -8.52 16 7 N -0.66 -10.61 5.31 -10.90 -0.06 -10.66 16 8 C 0.18 3.43 6.12 -83.75 -0.51 2.92 16 9 C -0.20 -3.75 8.66 -39.34 -0.34 -4.09 16 10 C -0.06 -1.17 10.03 -39.64 -0.40 -1.57 16 11 C -0.20 -4.15 9.99 -39.36 -0.39 -4.55 16 12 C 0.17 4.04 6.64 -39.13 -0.26 3.78 16 13 O -0.18 -4.97 9.76 0.06 0.00 -4.97 16 14 C -0.39 -10.92 9.49 30.89 0.29 -10.62 16 15 H 0.09 2.33 5.21 -52.48 -0.27 2.06 16 16 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 17 N -0.86 -25.17 13.67 55.48 0.76 -24.41 16 18 Si 0.94 20.46 29.55 -169.99 -5.02 15.44 16 19 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 20 H -0.28 -5.86 7.11 56.52 0.40 -5.45 16 21 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 22 C -0.25 -5.45 9.08 -39.20 -0.36 -5.80 16 23 C -0.12 -1.30 4.49 -91.77 -0.41 -1.71 16 24 C -0.18 -1.49 9.81 -26.69 -0.26 -1.75 16 25 C -0.16 -1.46 10.24 -26.69 -0.27 -1.74 16 26 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.08 0.48 6.29 -51.93 -0.33 0.16 16 28 H 0.07 0.56 7.65 -51.93 -0.40 0.16 16 29 H 0.41 5.61 8.39 -40.82 -0.34 5.26 16 30 H 0.11 2.00 6.98 -52.49 -0.37 1.63 16 31 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 32 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16 33 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 34 H 0.13 2.82 5.65 -52.49 -0.30 2.53 16 35 H 0.15 1.96 5.96 -51.93 -0.31 1.65 16 36 H 0.10 0.63 6.26 -51.93 -0.33 0.31 16 37 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 336.17 15.07 5.07 5.07 Total: -1.00 -31.29 336.17 -7.10 -38.39 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -4.31 Total: 9.20 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: -3.63 Total: -17.92 kcal Atomic # 7 Polarization: -35.77 SS G_CDS: 0.70 Total: -35.07 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: 0.06 Total: -13.49 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.29 -7.10 -38.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900237329.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.398 kcal (2) G-P(sol) polarization free energy of solvation -31.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds