Wall clock time and date at job start Tue Mar 31 2020 08:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33137 * 120.00033 * 2 1 4 4 F 1.35102 * 120.00203 * 353.51228 * 3 2 1 5 5 C 1.47260 * 120.00121 * 173.51498 * 3 2 1 6 6 O 1.21620 * 119.99638 * 5.66734 * 5 3 2 7 7 N 1.34768 * 120.00392 * 185.67363 * 5 3 2 8 8 C 1.39829 * 120.00351 * 172.73228 * 7 5 3 9 9 C 1.38983 * 120.04030 * 319.82698 * 8 7 5 10 10 C 1.38155 * 120.06765 * 180.02562 * 9 8 7 11 11 C 1.38175 * 120.13624 * 359.70239 * 10 9 8 12 12 C 1.38911 * 120.07825 * 0.55316 * 11 10 9 13 13 O 1.35745 * 120.03340 * 179.74309 * 12 11 10 14 14 C 1.34830 * 117.00351 * 173.29255 * 13 12 11 15 15 H 1.08003 * 119.99675 * 5.10099 * 14 13 12 16 16 C 1.38653 * 120.00257 * 185.10460 * 14 13 12 17 17 N 1.31554 * 120.00132 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99876 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47416 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.47218 * 119.99660 * 18 16 14 21 21 H 1.48501 * 109.47535 * 239.99795 * 18 16 14 22 22 C 1.38741 * 120.03566 * 139.85142 * 8 7 5 23 23 C 1.50708 * 119.99953 * 180.02562 * 2 1 3 24 24 C 1.53002 * 117.49765 * 359.74006 * 23 2 1 25 25 C 1.53001 * 117.49747 * 291.08028 * 23 2 1 26 26 H 1.09000 * 109.46961 * 90.00068 * 1 2 3 27 27 H 1.08998 * 109.47151 * 209.99789 * 1 2 3 28 28 H 1.08997 * 109.47110 * 329.99719 * 1 2 3 29 29 H 0.97004 * 119.99740 * 352.73592 * 7 5 3 30 30 H 1.07998 * 119.96668 * 0.02661 * 9 8 7 31 31 H 1.07994 * 119.92886 * 179.97438 * 10 9 8 32 32 H 1.08002 * 119.95776 * 180.29639 * 11 10 9 33 33 H 0.96993 * 119.99856 * 180.02562 * 17 16 14 34 34 H 1.07994 * 120.07375 * 359.97438 * 22 8 7 35 35 H 1.08996 * 115.55099 * 145.41198 * 23 2 1 36 36 H 1.08998 * 117.49783 * 0.02562 * 24 23 2 37 37 H 1.09000 * 117.49921 * 145.02295 * 24 23 2 38 38 H 1.08992 * 117.49774 * 214.97958 * 25 23 2 39 39 H 1.09002 * 117.49782 * 0.02562 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1727 1.1530 0.0000 4 9 1.5037 2.3193 -0.1322 5 6 3.6382 1.1571 0.1440 6 8 4.2506 0.1064 0.1594 7 7 4.3008 2.3250 0.2590 8 6 5.6690 2.3272 0.5475 9 6 6.1872 1.4253 1.4692 10 6 7.5389 1.4273 1.7551 11 6 8.3806 2.3213 1.1214 12 6 7.8681 3.2289 0.2031 13 8 8.6951 4.1102 -0.4150 14 6 8.1608 4.8678 -1.3941 15 1 7.1016 4.8171 -1.5989 16 6 8.9712 5.7117 -2.1381 17 7 10.2613 5.7738 -1.8884 18 14 8.2310 6.7607 -3.4950 19 1 6.7696 6.5090 -3.5739 20 1 8.4701 8.1958 -3.1976 21 1 8.8645 6.4117 -4.7920 22 6 6.5108 3.2301 -0.0858 23 6 2.2605 -1.3052 -0.0006 24 6 1.4384 -2.5955 0.0050 25 6 2.1910 -2.1616 1.2654 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8899 0.5139 29 1 3.8285 3.1641 0.1417 30 1 5.5326 0.7221 1.9626 31 1 7.9391 0.7258 2.4720 32 1 9.4375 2.3172 1.3435 33 1 10.8281 6.3644 -2.4087 34 1 6.1108 3.9320 -0.8025 35 1 3.1967 -1.3073 -0.5588 36 1 0.3526 -2.5004 0.0087 37 1 1.8339 -3.4467 -0.5493 38 1 3.0812 -2.7274 1.5397 39 1 1.5999 -1.7812 2.0985 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900237329.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:50:48 Heat of formation + Delta-G solvation = -51.412211 kcal Electronic energy + Delta-G solvation = -24098.740487 eV Core-core repulsion = 20308.524107 eV Total energy + Delta-G solvation = -3790.216380 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.97029 -41.65921 -40.49722 -39.01387 -38.00050 -35.72299 -34.26313 -33.97791 -31.20531 -30.48765 -28.94448 -27.33408 -25.10856 -23.54293 -23.41573 -23.11920 -21.86020 -20.51984 -19.82417 -19.12219 -18.86983 -17.72212 -17.17984 -17.00869 -16.79395 -16.49856 -16.10659 -15.79860 -15.56068 -15.38218 -15.33333 -15.04171 -14.63792 -14.25938 -14.04990 -13.80201 -13.61665 -13.31765 -13.19933 -12.81264 -12.73180 -12.56674 -12.46733 -12.21090 -12.11853 -11.84366 -11.59345 -11.41236 -11.25216 -10.79400 -10.56614 -9.85285 -9.41796 -8.95167 -8.49035 -6.17913 -0.15454 0.45131 0.66013 1.34195 1.42197 1.52086 1.80561 1.83015 2.15819 2.79632 2.94614 3.02500 3.11776 3.41040 3.47860 3.77995 3.96529 4.07185 4.16393 4.20862 4.25994 4.35453 4.39172 4.58079 4.63168 4.64810 4.78743 4.89912 4.96866 4.98703 5.03431 5.08428 5.22155 5.26994 5.32128 5.44304 5.49789 5.61306 5.62857 5.99275 6.10113 6.28867 6.87494 6.95491 7.73967 8.74044 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.018789 B = 0.003389 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.838859 B = 8261.120158 C = 9276.886505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.010 4.010 3 C -0.044 4.044 4 F -0.135 7.135 5 C 0.545 3.455 6 O -0.519 6.519 7 N -0.663 5.663 8 C 0.184 3.816 9 C -0.190 4.190 10 C -0.049 4.049 11 C -0.208 4.208 12 C 0.134 3.866 13 O -0.225 6.225 14 C -0.415 4.415 15 H 0.100 0.900 16 C -0.020 4.020 17 N -0.918 5.918 18 Si 1.017 2.983 19 H -0.253 1.253 20 H -0.266 1.266 21 H -0.269 1.269 22 C -0.258 4.258 23 C -0.150 4.150 24 C -0.158 4.158 25 C -0.156 4.156 26 H 0.100 0.900 27 H 0.102 0.898 28 H 0.079 0.921 29 H 0.420 0.580 30 H 0.130 0.870 31 H 0.159 0.841 32 H 0.123 0.877 33 H 0.273 0.727 34 H 0.125 0.875 35 H 0.117 0.883 36 H 0.121 0.879 37 H 0.105 0.895 38 H 0.095 0.905 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.100 -12.885 4.748 26.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.013 4.013 3 C -0.067 4.067 4 F -0.114 7.114 5 C 0.335 3.665 6 O -0.397 6.397 7 N -0.308 5.308 8 C 0.090 3.910 9 C -0.211 4.211 10 C -0.067 4.067 11 C -0.227 4.227 12 C 0.083 3.917 13 O -0.131 6.131 14 C -0.491 4.491 15 H 0.117 0.883 16 C -0.218 4.218 17 N -0.556 5.556 18 Si 0.836 3.164 19 H -0.176 1.176 20 H -0.191 1.191 21 H -0.194 1.194 22 C -0.279 4.279 23 C -0.168 4.168 24 C -0.194 4.194 25 C -0.193 4.193 26 H 0.118 0.882 27 H 0.121 0.879 28 H 0.098 0.902 29 H 0.257 0.743 30 H 0.148 0.852 31 H 0.177 0.823 32 H 0.141 0.859 33 H 0.083 0.917 34 H 0.142 0.858 35 H 0.135 0.865 36 H 0.139 0.861 37 H 0.124 0.876 38 H 0.114 0.886 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -21.326 -13.420 4.733 25.638 hybrid contribution 0.103 1.569 -0.780 1.756 sum -21.223 -11.850 3.952 24.627 Atomic orbital electron populations 1.21099 0.87374 1.05101 1.04813 1.22334 0.97991 0.91781 0.89222 1.18927 0.88078 0.82759 1.16902 1.91468 1.79489 1.46336 1.94142 1.18682 0.87516 0.83673 0.76649 1.90791 1.68381 1.30814 1.49716 1.43362 1.07434 1.10053 1.69974 1.17384 0.82622 0.96558 0.94419 1.20771 0.96275 1.02698 1.01314 1.20935 0.92032 0.96320 0.97452 1.20537 1.00876 0.99130 1.02194 1.19601 0.89670 0.89642 0.92799 1.83968 1.37067 1.45586 1.46468 1.21821 0.95155 1.20741 1.11344 0.88271 1.26555 0.95635 0.98832 1.00765 1.70178 1.05636 1.38404 1.41342 0.84552 0.78691 0.77163 0.75948 1.17623 1.19104 1.19393 1.20900 0.93014 1.06759 1.07220 1.21375 1.01353 0.88390 1.05635 1.23270 0.99811 0.96046 1.00278 1.22963 1.03139 1.01686 0.91535 0.88208 0.87948 0.90188 0.74270 0.85203 0.82303 0.85943 0.91740 0.85776 0.86507 0.86135 0.87625 0.88648 0.87796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.43 9.29 71.24 0.66 -0.77 16 2 C -0.01 -0.19 5.81 -17.59 -0.10 -0.30 16 3 C -0.04 -1.06 7.34 23.50 0.17 -0.89 16 4 F -0.14 -3.08 15.91 44.97 0.72 -2.36 16 5 C 0.55 16.39 7.40 86.62 0.64 17.03 16 6 O -0.52 -17.61 11.39 -4.09 -0.05 -17.65 16 7 N -0.66 -20.89 5.31 -306.66 -1.63 -22.52 16 8 C 0.18 7.02 6.12 38.16 0.23 7.25 16 9 C -0.19 -6.82 8.66 22.43 0.19 -6.63 16 10 C -0.05 -1.72 10.03 22.23 0.22 -1.50 16 11 C -0.21 -8.93 9.99 22.42 0.22 -8.71 16 12 C 0.13 6.75 6.64 22.56 0.15 6.90 16 13 O -0.22 -13.51 9.76 -22.68 -0.22 -13.73 16 14 C -0.41 -24.17 9.49 67.92 0.64 -23.53 16 15 H 0.10 5.34 5.21 -2.91 -0.02 5.32 16 16 C -0.02 -1.13 5.49 84.83 0.47 -0.67 16 17 N -0.92 -56.20 13.67 21.61 0.30 -55.90 16 18 Si 1.02 42.91 29.55 68.60 2.03 44.94 16 19 H -0.25 -9.89 7.11 99.48 0.71 -9.18 16 20 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 21 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 22 C -0.26 -11.56 9.08 22.52 0.20 -11.35 16 23 C -0.15 -2.95 4.49 -11.54 -0.05 -3.00 16 24 C -0.16 -1.99 9.81 30.62 0.30 -1.69 16 25 C -0.16 -2.50 10.24 30.62 0.31 -2.19 16 26 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.10 0.71 6.29 -2.39 -0.02 0.70 16 28 H 0.08 0.89 7.65 -2.39 -0.02 0.88 16 29 H 0.42 11.36 8.39 -92.71 -0.78 10.58 16 30 H 0.13 4.29 6.98 -2.91 -0.02 4.27 16 31 H 0.16 4.25 8.06 -2.91 -0.02 4.22 16 32 H 0.12 5.08 8.06 -2.91 -0.02 5.06 16 33 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 34 H 0.12 5.61 5.65 -2.91 -0.02 5.59 16 35 H 0.12 3.08 5.96 -2.39 -0.01 3.06 16 36 H 0.12 0.96 6.26 -2.39 -0.01 0.94 16 37 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -72.17 336.17 5.75 -66.42 By element: Atomic # 1 Polarization: 30.50 SS G_CDS: 0.33 Total: 30.84 kcal Atomic # 6 Polarization: -34.30 SS G_CDS: 4.27 Total: -30.03 kcal Atomic # 7 Polarization: -77.09 SS G_CDS: -1.33 Total: -78.42 kcal Atomic # 8 Polarization: -31.12 SS G_CDS: -0.27 Total: -31.39 kcal Atomic # 9 Polarization: -3.08 SS G_CDS: 0.72 Total: -2.36 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -72.17 5.75 -66.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900237329.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.007 kcal (2) G-P(sol) polarization free energy of solvation -72.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds