Wall clock time and date at job start Tue Mar 31 2020 08:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53009 * 109.46830 * 2 1 4 4 H 1.08993 * 109.47098 * 305.40837 * 3 2 1 5 5 C 1.50699 * 109.46693 * 185.41062 * 3 2 1 6 6 H 1.07998 * 120.00033 * 245.36093 * 5 3 2 7 7 C 1.37881 * 120.00190 * 65.36336 * 5 3 2 8 8 N 1.31515 * 119.99662 * 197.20579 * 7 5 3 9 9 Si 1.86800 * 119.99765 * 17.20285 * 7 5 3 10 10 H 1.48498 * 109.46786 * 179.97438 * 9 7 5 11 11 H 1.48497 * 109.47189 * 299.99898 * 9 7 5 12 12 H 1.48497 * 109.47010 * 60.00097 * 9 7 5 13 13 N 1.46497 * 109.47062 * 65.41028 * 3 2 1 14 14 C 1.34773 * 120.00051 * 267.38797 * 13 3 2 15 15 O 1.21278 * 120.00416 * 5.13839 * 14 13 3 16 16 C 1.50702 * 120.00026 * 185.14519 * 14 13 3 17 17 S 1.81403 * 115.55051 * 20.63512 * 16 14 13 18 18 C 1.76203 * 102.99831 * 65.33416 * 17 16 14 19 19 C 1.38974 * 120.08089 * 5.78883 * 18 17 16 20 20 C 1.38083 * 119.91841 * 179.72093 * 19 18 17 21 21 C 1.38301 * 120.07746 * 0.54044 * 20 19 18 22 22 C 1.38302 * 120.16285 * 359.75623 * 21 20 19 23 23 C 1.38077 * 120.08228 * 359.96253 * 22 21 20 24 24 C 1.53006 * 117.49728 * 234.93183 * 16 14 13 25 25 C 1.52999 * 117.49897 * 166.31028 * 16 14 13 26 26 H 1.09003 * 109.47108 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47350 * 300.00510 * 1 2 3 28 28 H 1.09005 * 109.46963 * 59.99904 * 1 2 3 29 29 H 1.08994 * 109.47249 * 240.00185 * 2 1 3 30 30 H 1.08993 * 109.46835 * 119.99717 * 2 1 3 31 31 H 0.96992 * 120.00552 * 354.94015 * 8 7 5 32 32 H 0.97006 * 120.00016 * 87.38862 * 13 3 2 33 33 H 1.08004 * 120.03945 * 359.97438 * 19 18 17 34 34 H 1.08000 * 119.96174 * 180.27041 * 20 19 18 35 35 H 1.07997 * 119.91578 * 179.74532 * 21 20 19 36 36 H 1.08000 * 119.95616 * 179.97438 * 22 21 20 37 37 H 1.07994 * 120.04376 * 180.02562 * 23 22 21 38 38 H 1.08999 * 117.49578 * 359.97438 * 24 16 14 39 39 H 1.08999 * 117.49668 * 145.01498 * 24 16 14 40 40 H 1.09004 * 117.49779 * 214.97544 * 25 16 14 41 41 H 1.08998 * 117.50243 * 359.97438 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5997 1.9836 -0.8375 5 6 3.5410 1.4447 -0.1340 6 1 4.1550 1.8084 0.6766 7 6 4.1305 0.9822 -1.2914 8 7 5.4065 0.6636 -1.2975 9 14 3.1168 0.8082 -2.8508 10 1 3.9781 0.2958 -3.9465 11 1 2.0007 -0.1419 -2.6122 12 1 2.5657 2.1330 -3.2333 13 7 1.6608 2.0946 1.2559 14 6 0.5105 2.7926 1.3324 15 8 -0.2555 2.8041 0.3922 16 6 0.1761 3.5590 2.5861 17 16 1.5835 3.9552 3.6598 18 6 2.5394 5.0560 2.6703 19 6 2.0531 5.4898 1.4428 20 6 2.8025 6.3570 0.6727 21 6 4.0405 6.7851 1.1165 22 6 4.5303 6.3506 2.3347 23 6 3.7840 5.4880 3.1129 24 6 -1.1650 3.2611 3.2597 25 6 -0.9622 4.5785 2.5084 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 5.9498 0.8226 -0.5100 32 1 2.2378 2.0238 2.0326 33 1 1.0885 5.1523 1.0935 34 1 2.4234 6.6980 -0.2794 35 1 4.6261 7.4601 0.5102 36 1 5.4976 6.6867 2.6779 37 1 4.1669 5.1494 4.0642 38 1 -1.8055 2.5110 2.7957 39 1 -1.2017 3.3029 4.3482 40 1 -0.8655 5.4870 3.1029 41 1 -1.4689 4.6951 1.5505 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116616515.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:54:03 Heat of formation + Delta-G solvation = 10.591027 kcal Electronic energy + Delta-G solvation = -23414.274235 eV Core-core repulsion = 20192.959693 eV Total energy + Delta-G solvation = -3221.314542 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.68703 -38.68859 -36.59483 -34.98872 -32.42882 -31.47966 -30.84472 -30.80230 -27.44687 -24.50517 -22.91182 -22.57257 -22.29004 -22.16331 -20.21877 -19.62326 -18.24962 -17.59427 -17.00483 -15.80249 -15.66197 -15.09613 -14.71183 -14.64565 -14.28428 -13.91208 -13.44922 -13.29092 -13.02352 -12.92929 -12.62682 -12.53669 -12.27205 -11.88714 -11.77779 -11.58824 -11.14419 -11.03890 -10.90746 -10.72615 -10.63902 -10.45403 -10.33401 -9.88345 -9.64350 -9.59742 -9.26885 -9.06052 -8.82446 -8.30488 -8.11863 -7.34588 -6.55179 -4.17903 1.31490 1.48166 1.52515 2.23579 2.88021 3.36961 3.43321 3.57498 3.74706 3.82238 3.87485 4.42034 4.46915 4.74359 4.97222 5.05317 5.06472 5.18076 5.22617 5.42707 5.52121 5.54316 5.64184 5.71238 5.87194 5.97086 6.02902 6.05405 6.10614 6.23104 6.38948 6.50302 6.63906 6.65712 6.74816 6.91601 6.99391 7.03379 7.32110 7.39731 7.68929 8.27138 8.44148 8.71687 8.93853 9.50511 10.85060 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.012003 B = 0.006916 C = 0.005117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.216631 B = 4047.556875 C = 5470.988826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.140 4.140 3 C 0.248 3.752 4 H 0.042 0.958 5 C -0.612 4.612 6 H 0.062 0.938 7 C 0.040 3.960 8 N -0.898 5.898 9 Si 1.038 2.962 10 H -0.283 1.283 11 H -0.270 1.270 12 H -0.281 1.281 13 N -0.687 5.687 14 C 0.541 3.459 15 O -0.547 6.547 16 C -0.178 4.178 17 S -0.055 6.055 18 C -0.088 4.088 19 C -0.110 4.110 20 C -0.099 4.099 21 C -0.120 4.120 22 C -0.106 4.106 23 C -0.099 4.099 24 C -0.109 4.109 25 C -0.128 4.128 26 H 0.033 0.967 27 H 0.044 0.956 28 H 0.050 0.950 29 H 0.070 0.930 30 H 0.052 0.948 31 H 0.269 0.731 32 H 0.398 0.602 33 H 0.124 0.876 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.125 0.875 37 H 0.124 0.876 38 H 0.113 0.887 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.314 9.670 9.844 16.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.178 4.178 3 C 0.145 3.855 4 H 0.060 0.940 5 C -0.650 4.650 6 H 0.080 0.920 7 C -0.167 4.167 8 N -0.531 5.531 9 Si 0.866 3.134 10 H -0.209 1.209 11 H -0.196 1.196 12 H -0.207 1.207 13 N -0.334 5.334 14 C 0.323 3.677 15 O -0.427 6.427 16 C -0.291 4.291 17 S 0.191 5.809 18 C -0.200 4.200 19 C -0.134 4.134 20 C -0.119 4.119 21 C -0.141 4.141 22 C -0.126 4.126 23 C -0.122 4.122 24 C -0.149 4.149 25 C -0.167 4.167 26 H 0.052 0.948 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.088 0.912 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.233 0.767 33 H 0.142 0.858 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.143 0.857 37 H 0.142 0.858 38 H 0.131 0.869 39 H 0.128 0.872 40 H 0.128 0.872 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -8.565 8.649 8.741 14.985 hybrid contribution 0.256 0.876 0.704 1.152 sum -8.309 9.524 9.445 15.779 Atomic orbital electron populations 1.21806 0.97593 0.99052 1.01509 1.22354 0.93650 0.99873 1.01959 1.19089 0.95923 0.88473 0.82001 0.93997 1.22078 0.89612 1.48943 1.04347 0.92032 1.25622 0.97512 0.92413 1.01130 1.70862 1.07556 1.40693 1.34038 0.84147 0.75583 0.77604 0.76081 1.20908 1.19580 1.20750 1.46213 1.20602 1.50277 1.16290 1.18970 0.82707 0.79706 0.86354 1.90661 1.49376 1.64722 1.37960 1.24089 0.93383 1.09829 1.01827 1.84895 1.20500 1.54988 1.20504 1.21691 0.98367 1.01421 0.98521 1.21234 1.00589 0.97990 0.93552 1.21055 0.94706 0.96973 0.99133 1.21155 0.95987 1.00544 0.96366 1.21004 0.99316 0.97508 0.94736 1.20672 0.92660 0.98604 1.00281 1.22971 0.91842 1.00068 0.99982 1.23286 0.96870 0.93079 1.03512 0.94774 0.93723 0.93128 0.91206 0.92950 0.92104 0.76694 0.85794 0.85883 0.85989 0.85750 0.85803 0.86894 0.87159 0.87185 0.86666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 8.68 37.16 0.32 -2.53 16 2 C -0.14 -3.14 5.28 -26.73 -0.14 -3.28 16 3 C 0.25 6.00 1.79 -69.08 -0.12 5.88 16 4 H 0.04 1.10 6.09 -51.93 -0.32 0.79 16 5 C -0.61 -16.77 9.02 -34.44 -0.31 -17.08 16 6 H 0.06 1.81 8.03 -52.49 -0.42 1.38 16 7 C 0.04 1.13 5.30 -17.82 -0.09 1.03 16 8 N -0.90 -26.97 13.70 55.43 0.76 -26.21 16 9 Si 1.04 25.36 26.29 -169.99 -4.47 20.89 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.27 -6.14 5.70 56.52 0.32 -5.81 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 N -0.69 -14.41 4.73 -54.93 -0.26 -14.67 16 14 C 0.54 10.38 4.62 -10.99 -0.05 10.33 16 15 O -0.55 -11.80 14.10 5.56 0.08 -11.73 16 16 C -0.18 -2.64 1.48 -91.77 -0.14 -2.78 16 17 S -0.05 -0.79 20.49 -107.50 -2.20 -2.99 16 18 C -0.09 -1.39 6.09 -39.03 -0.24 -1.63 16 19 C -0.11 -1.83 8.93 -39.37 -0.35 -2.19 16 20 C -0.10 -1.52 10.04 -39.62 -0.40 -1.92 16 21 C -0.12 -1.67 10.04 -39.53 -0.40 -2.06 16 22 C -0.11 -1.43 10.04 -39.62 -0.40 -1.83 16 23 C -0.10 -1.43 9.79 -39.37 -0.39 -1.82 16 24 C -0.11 -1.27 9.99 -26.73 -0.27 -1.54 16 25 C -0.13 -1.55 8.94 -26.73 -0.24 -1.79 16 26 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.04 0.88 6.16 -51.93 -0.32 0.56 16 28 H 0.05 1.05 8.03 -51.93 -0.42 0.63 16 29 H 0.07 1.64 4.79 -51.93 -0.25 1.39 16 30 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.27 8.03 8.73 -40.82 -0.36 7.67 16 32 H 0.40 8.09 7.39 -40.82 -0.30 7.78 16 33 H 0.12 2.15 4.88 -52.48 -0.26 1.89 16 34 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 35 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 36 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 37 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 38 H 0.11 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.11 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.12 1.49 7.74 -51.93 -0.40 1.08 16 LS Contribution 344.04 15.07 5.18 5.18 Total: -1.00 -30.96 344.04 -9.84 -40.80 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -5.72 Total: 11.93 kcal Atomic # 6 Polarization: -20.00 SS G_CDS: -3.21 Total: -23.21 kcal Atomic # 7 Polarization: -41.38 SS G_CDS: 0.50 Total: -40.88 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.08 Total: -11.73 kcal Atomic # 14 Polarization: 25.36 SS G_CDS: -4.47 Total: 20.89 kcal Atomic # 16 Polarization: -0.79 SS G_CDS: -2.20 Total: -2.99 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.96 -9.84 -40.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116616515.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.393 kcal (2) G-P(sol) polarization free energy of solvation -30.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds