Wall clock time and date at job start Tue Mar 31 2020 08:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53009 * 109.46830 * 2 1 4 4 H 1.08993 * 109.47098 * 305.40837 * 3 2 1 5 5 C 1.50699 * 109.46693 * 185.41062 * 3 2 1 6 6 H 1.07998 * 120.00033 * 245.36093 * 5 3 2 7 7 C 1.37881 * 120.00190 * 65.36336 * 5 3 2 8 8 N 1.31515 * 119.99662 * 197.20579 * 7 5 3 9 9 Si 1.86800 * 119.99765 * 17.20285 * 7 5 3 10 10 H 1.48498 * 109.46786 * 179.97438 * 9 7 5 11 11 H 1.48497 * 109.47189 * 299.99898 * 9 7 5 12 12 H 1.48497 * 109.47010 * 60.00097 * 9 7 5 13 13 N 1.46497 * 109.47062 * 65.41028 * 3 2 1 14 14 C 1.34773 * 120.00051 * 267.38797 * 13 3 2 15 15 O 1.21278 * 120.00416 * 5.13839 * 14 13 3 16 16 C 1.50702 * 120.00026 * 185.14519 * 14 13 3 17 17 S 1.81403 * 115.55051 * 20.63512 * 16 14 13 18 18 C 1.76203 * 102.99831 * 65.33416 * 17 16 14 19 19 C 1.38974 * 120.08089 * 5.78883 * 18 17 16 20 20 C 1.38083 * 119.91841 * 179.72093 * 19 18 17 21 21 C 1.38301 * 120.07746 * 0.54044 * 20 19 18 22 22 C 1.38302 * 120.16285 * 359.75623 * 21 20 19 23 23 C 1.38077 * 120.08228 * 359.96253 * 22 21 20 24 24 C 1.53006 * 117.49728 * 234.93183 * 16 14 13 25 25 C 1.52999 * 117.49897 * 166.31028 * 16 14 13 26 26 H 1.09003 * 109.47108 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47350 * 300.00510 * 1 2 3 28 28 H 1.09005 * 109.46963 * 59.99904 * 1 2 3 29 29 H 1.08994 * 109.47249 * 240.00185 * 2 1 3 30 30 H 1.08993 * 109.46835 * 119.99717 * 2 1 3 31 31 H 0.96992 * 120.00552 * 354.94015 * 8 7 5 32 32 H 0.97006 * 120.00016 * 87.38862 * 13 3 2 33 33 H 1.08004 * 120.03945 * 359.97438 * 19 18 17 34 34 H 1.08000 * 119.96174 * 180.27041 * 20 19 18 35 35 H 1.07997 * 119.91578 * 179.74532 * 21 20 19 36 36 H 1.08000 * 119.95616 * 179.97438 * 22 21 20 37 37 H 1.07994 * 120.04376 * 180.02562 * 23 22 21 38 38 H 1.08999 * 117.49578 * 359.97438 * 24 16 14 39 39 H 1.08999 * 117.49668 * 145.01498 * 24 16 14 40 40 H 1.09004 * 117.49779 * 214.97544 * 25 16 14 41 41 H 1.08998 * 117.50243 * 359.97438 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5997 1.9836 -0.8375 5 6 3.5410 1.4447 -0.1340 6 1 4.1550 1.8084 0.6766 7 6 4.1305 0.9822 -1.2914 8 7 5.4065 0.6636 -1.2975 9 14 3.1168 0.8082 -2.8508 10 1 3.9781 0.2958 -3.9465 11 1 2.0007 -0.1419 -2.6122 12 1 2.5657 2.1330 -3.2333 13 7 1.6608 2.0946 1.2559 14 6 0.5105 2.7926 1.3324 15 8 -0.2555 2.8041 0.3922 16 6 0.1761 3.5590 2.5861 17 16 1.5835 3.9552 3.6598 18 6 2.5394 5.0560 2.6703 19 6 2.0531 5.4898 1.4428 20 6 2.8025 6.3570 0.6727 21 6 4.0405 6.7851 1.1165 22 6 4.5303 6.3506 2.3347 23 6 3.7840 5.4880 3.1129 24 6 -1.1650 3.2611 3.2597 25 6 -0.9622 4.5785 2.5084 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 5.9498 0.8226 -0.5100 32 1 2.2378 2.0238 2.0326 33 1 1.0885 5.1523 1.0935 34 1 2.4234 6.6980 -0.2794 35 1 4.6261 7.4601 0.5102 36 1 5.4976 6.6867 2.6779 37 1 4.1669 5.1494 4.0642 38 1 -1.8055 2.5110 2.7957 39 1 -1.2017 3.3029 4.3482 40 1 -0.8655 5.4870 3.1029 41 1 -1.4689 4.6951 1.5505 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116616515.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:54:03 Heat of formation + Delta-G solvation = -7.177852 kcal Electronic energy + Delta-G solvation = -23415.044751 eV Core-core repulsion = 20192.959693 eV Total energy + Delta-G solvation = -3222.085058 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.16569 -39.81635 -37.98463 -36.61440 -34.49424 -33.19417 -31.98935 -31.92662 -29.33590 -25.94340 -24.23213 -23.86270 -23.68706 -23.28203 -21.87101 -21.28725 -19.97396 -18.93680 -18.50635 -17.32255 -16.91006 -16.41285 -16.18793 -15.83923 -15.79244 -15.29931 -15.06197 -14.63156 -14.50961 -14.35754 -14.24944 -14.11753 -13.83943 -13.64703 -12.94841 -12.72727 -12.59833 -12.51249 -12.34497 -12.22589 -12.13696 -11.82203 -11.71108 -11.60818 -11.39261 -11.15698 -10.80744 -10.64943 -10.48732 -9.98201 -9.87449 -8.80943 -8.46887 -6.44389 0.17372 0.36500 0.37576 1.07413 1.40107 1.45521 1.54941 1.64724 2.28509 2.37992 2.65526 2.72924 2.99094 3.36026 3.68554 3.76806 3.86632 3.95738 4.17060 4.26355 4.36160 4.43348 4.44218 4.50598 4.52660 4.54738 4.75959 4.77367 4.81468 4.99338 5.04955 5.06193 5.15729 5.23771 5.24489 5.39340 5.50428 5.50729 5.61088 5.66716 5.93728 5.98864 6.50981 6.74059 7.23452 7.35126 8.57789 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.012003 B = 0.006916 C = 0.005117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.216631 B = 4047.556875 C = 5470.988826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.137 4.137 3 C 0.255 3.745 4 H 0.022 0.978 5 C -0.607 4.607 6 H 0.031 0.969 7 C -0.003 4.003 8 N -0.926 5.926 9 Si 1.069 2.931 10 H -0.281 1.281 11 H -0.242 1.242 12 H -0.277 1.277 13 N -0.693 5.693 14 C 0.543 3.457 15 O -0.574 6.574 16 C -0.202 4.202 17 S -0.033 6.033 18 C -0.108 4.108 19 C -0.133 4.133 20 C -0.118 4.118 21 C -0.126 4.126 22 C -0.107 4.107 23 C -0.111 4.111 24 C -0.086 4.086 25 C -0.115 4.115 26 H 0.062 0.938 27 H 0.045 0.955 28 H 0.040 0.960 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.256 0.744 32 H 0.400 0.600 33 H 0.110 0.890 34 H 0.131 0.869 35 H 0.148 0.852 36 H 0.155 0.845 37 H 0.141 0.859 38 H 0.113 0.887 39 H 0.140 0.860 40 H 0.131 0.869 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.727 10.035 10.914 17.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.176 4.176 3 C 0.151 3.849 4 H 0.040 0.960 5 C -0.645 4.645 6 H 0.050 0.950 7 C -0.204 4.204 8 N -0.561 5.561 9 Si 0.891 3.109 10 H -0.206 1.206 11 H -0.167 1.167 12 H -0.203 1.203 13 N -0.341 5.341 14 C 0.327 3.673 15 O -0.455 6.455 16 C -0.316 4.316 17 S 0.213 5.787 18 C -0.220 4.220 19 C -0.156 4.156 20 C -0.138 4.138 21 C -0.146 4.146 22 C -0.127 4.127 23 C -0.134 4.134 24 C -0.125 4.125 25 C -0.154 4.154 26 H 0.080 0.920 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.235 0.765 33 H 0.128 0.872 34 H 0.149 0.851 35 H 0.166 0.834 36 H 0.172 0.828 37 H 0.158 0.842 38 H 0.132 0.868 39 H 0.158 0.842 40 H 0.149 0.851 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -9.996 9.024 9.848 16.683 hybrid contribution 0.737 0.843 0.437 1.202 sum -9.259 9.867 10.285 16.996 Atomic orbital electron populations 1.21685 0.95351 1.00749 1.01083 1.22243 0.95585 0.98190 1.01566 1.18764 0.93445 0.89724 0.83004 0.95977 1.22204 0.91456 1.47640 1.03197 0.95027 1.26767 0.97674 0.92060 1.03888 1.70969 1.08508 1.43042 1.33607 0.83755 0.75388 0.78486 0.73231 1.20639 1.16663 1.20321 1.46069 1.21691 1.51136 1.15215 1.19525 0.81429 0.78793 0.87547 1.90636 1.49987 1.65416 1.39486 1.23962 0.94974 1.11718 1.00950 1.84705 1.20235 1.54359 1.19363 1.21961 0.99309 1.02042 0.98737 1.21240 1.00586 0.99259 0.94538 1.21329 0.95578 0.97250 0.99627 1.21517 0.95581 1.00611 0.96872 1.21435 1.00305 0.96614 0.94322 1.21023 0.92419 0.98790 1.01205 1.23200 0.88467 0.99294 1.01547 1.23375 0.94435 0.94034 1.03580 0.91952 0.93633 0.94062 0.92149 0.92788 0.93425 0.76476 0.87154 0.85124 0.83443 0.82758 0.84165 0.86834 0.84162 0.85069 0.87643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.02 8.68 71.98 0.62 -4.39 16 2 C -0.14 -6.04 5.28 30.60 0.16 -5.88 16 3 C 0.26 12.38 1.79 44.25 0.08 12.46 16 4 H 0.02 1.18 6.09 -2.39 -0.01 1.17 16 5 C -0.61 -34.02 9.02 25.60 0.23 -33.79 16 6 H 0.03 1.92 8.03 -2.91 -0.02 1.90 16 7 C 0.00 -0.18 5.30 84.66 0.45 0.26 16 8 N -0.93 -56.83 13.70 21.45 0.29 -56.54 16 9 Si 1.07 51.11 26.29 68.60 1.80 52.91 16 10 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 11 H -0.24 -10.46 5.70 99.48 0.57 -9.89 16 12 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 13 N -0.69 -29.20 4.73 -446.10 -2.11 -31.31 16 14 C 0.54 20.60 4.62 87.66 0.40 21.01 16 15 O -0.57 -24.61 14.10 -3.02 -0.04 -24.66 16 16 C -0.20 -5.74 1.48 -11.54 -0.02 -5.76 16 17 S -0.03 -0.90 20.49 -56.49 -1.16 -2.05 16 18 C -0.11 -3.38 6.09 22.62 0.14 -3.25 16 19 C -0.13 -4.45 8.93 22.41 0.20 -4.25 16 20 C -0.12 -3.64 10.04 22.25 0.22 -3.42 16 21 C -0.13 -3.36 10.04 22.30 0.22 -3.14 16 22 C -0.11 -2.74 10.04 22.25 0.22 -2.52 16 23 C -0.11 -3.11 9.79 22.41 0.22 -2.89 16 24 C -0.09 -1.76 9.99 30.60 0.31 -1.45 16 25 C -0.11 -2.57 8.94 30.59 0.27 -2.29 16 26 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.04 1.71 6.16 -2.38 -0.01 1.70 16 28 H 0.04 1.64 8.03 -2.38 -0.02 1.62 16 29 H 0.06 2.76 4.79 -2.39 -0.01 2.74 16 30 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.26 15.87 8.73 -92.71 -0.81 15.06 16 32 H 0.40 16.38 7.39 -92.70 -0.68 15.70 16 33 H 0.11 3.90 4.88 -2.91 -0.01 3.89 16 34 H 0.13 3.63 8.06 -2.91 -0.02 3.60 16 35 H 0.15 3.06 8.06 -2.91 -0.02 3.04 16 36 H 0.15 2.91 8.06 -2.91 -0.02 2.89 16 37 H 0.14 3.34 8.06 -2.91 -0.02 3.32 16 38 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 39 H 0.14 2.05 8.14 -2.39 -0.02 2.04 16 40 H 0.13 2.38 8.14 -2.38 -0.02 2.36 16 41 H 0.11 2.60 7.74 -2.39 -0.02 2.59 16 Total: -1.00 -68.12 344.04 2.71 -65.41 By element: Atomic # 1 Polarization: 35.35 SS G_CDS: 0.18 Total: 35.53 kcal Atomic # 6 Polarization: -43.04 SS G_CDS: 3.74 Total: -39.30 kcal Atomic # 7 Polarization: -86.03 SS G_CDS: -1.82 Total: -87.85 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -0.04 Total: -24.66 kcal Atomic # 14 Polarization: 51.11 SS G_CDS: 1.80 Total: 52.91 kcal Atomic # 16 Polarization: -0.90 SS G_CDS: -1.16 Total: -2.05 kcal Total: -68.12 2.71 -65.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116616515.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.234 kcal (2) G-P(sol) polarization free energy of solvation -68.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds