Wall clock time and date at job start Tue Mar 31 2020 08:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33143 * 120.00178 * 2 1 4 4 F 1.35098 * 120.00251 * 172.55284 * 3 2 1 5 5 C 1.47262 * 119.99710 * 352.28082 * 3 2 1 6 6 O 1.21621 * 120.00010 * 353.28841 * 5 3 2 7 7 N 1.34775 * 120.00064 * 173.28871 * 5 3 2 8 8 C 1.39886 * 120.00379 * 184.53798 * 7 5 3 9 9 C 1.38952 * 120.00329 * 324.43623 * 8 7 5 10 10 C 1.37988 * 119.99579 * 179.71633 * 9 8 7 11 11 C 1.38921 * 120.00347 * 0.55388 * 10 9 8 12 12 O 1.35778 * 119.99622 * 179.69656 * 11 10 9 13 13 C 1.34810 * 116.99963 * 185.82913 * 12 11 10 14 14 H 1.08004 * 119.99995 * 5.41980 * 13 12 11 15 15 C 1.38637 * 119.99835 * 185.41876 * 13 12 11 16 16 N 1.31565 * 120.00075 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99765 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47140 * 59.99681 * 17 15 13 19 19 H 1.48494 * 109.47118 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47241 * 299.99841 * 17 15 13 21 21 C 1.38913 * 120.00786 * 359.72149 * 11 10 9 22 22 C 1.37997 * 120.00372 * 0.02562 * 21 11 10 23 23 C 1.50703 * 120.00041 * 179.97438 * 2 1 3 24 24 C 1.53000 * 117.49703 * 8.62340 * 23 2 1 25 25 C 1.52998 * 60.00032 * 252.51229 * 24 23 2 26 26 H 1.09005 * 109.46954 * 84.26340 * 1 2 3 27 27 H 1.09001 * 109.47479 * 204.26047 * 1 2 3 28 28 H 1.09002 * 109.47216 * 324.26783 * 1 2 3 29 29 H 0.97001 * 119.99767 * 4.54263 * 7 5 3 30 30 H 1.08005 * 119.99876 * 359.97438 * 9 8 7 31 31 H 1.08004 * 120.00162 * 180.25044 * 10 9 8 32 32 H 0.96994 * 120.00071 * 179.97438 * 16 15 13 33 33 H 1.07993 * 119.99776 * 179.97438 * 21 11 10 34 34 H 1.08003 * 120.00288 * 179.97438 * 22 21 11 35 35 H 1.08990 * 115.55039 * 154.33358 * 23 2 1 36 36 H 1.09007 * 117.49794 * 0.02562 * 24 23 2 37 37 H 1.08997 * 117.49429 * 145.01616 * 24 23 2 38 38 H 1.09003 * 117.49816 * 252.50805 * 25 24 23 39 39 H 1.09002 * 117.49529 * 107.49766 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1728 1.1530 0.0000 4 9 3.5152 1.1580 0.1516 5 6 1.4464 2.4226 -0.1713 6 8 0.2590 2.4131 -0.4343 7 7 2.0975 3.5949 -0.0367 8 6 1.3901 4.7998 -0.1051 9 6 0.3108 4.9236 -0.9714 10 6 -0.3905 6.1103 -1.0345 11 6 -0.0104 7.1849 -0.2404 12 8 -0.6968 8.3545 -0.3071 13 6 -0.2053 9.3937 0.3972 14 1 0.7413 9.2998 0.9087 15 6 -0.9148 10.5828 0.4648 16 7 -2.0677 10.6973 -0.1588 17 14 -0.2333 12.0228 1.4400 18 1 1.0827 12.4217 0.8796 19 1 -1.1747 13.1681 1.3548 20 1 -0.0660 11.6237 2.8605 21 6 1.0721 7.0632 0.6216 22 6 1.7705 5.8749 0.6887 23 6 2.2605 -1.3051 0.0006 24 6 1.4517 -2.5879 -0.2023 25 6 2.0260 -2.2557 1.1763 26 1 -0.3633 0.1027 -1.0226 27 1 -0.3634 -0.9369 0.4222 28 1 -0.3634 0.8342 0.6002 29 1 3.0567 3.6032 0.1076 30 1 0.0182 4.0897 -1.5922 31 1 -1.2320 6.2053 -1.7048 32 1 -2.5643 11.5291 -0.1112 33 1 1.3677 7.8988 1.2385 34 1 2.6124 5.7804 1.3586 35 1 3.2631 -1.2693 -0.4253 36 1 0.3746 -2.4878 -0.3367 37 1 1.9222 -3.3962 -0.7621 38 1 2.8743 -2.8456 1.5236 39 1 1.3267 -1.9372 1.9494 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119593509.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:50:54 Heat of formation + Delta-G solvation = -34.453393 kcal Electronic energy + Delta-G solvation = -23638.260249 eV Core-core repulsion = 19848.779259 eV Total energy + Delta-G solvation = -3789.480990 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.03138 -40.28275 -38.86871 -38.21742 -36.59774 -34.12155 -33.10813 -32.21348 -30.24399 -28.60149 -27.18736 -25.46991 -24.55187 -22.76743 -22.33085 -21.68007 -20.38924 -19.11568 -18.29667 -17.79010 -17.38588 -16.95144 -16.16373 -16.09583 -15.24445 -14.71863 -14.67164 -14.59224 -14.36837 -14.05126 -13.62460 -13.54456 -13.18036 -12.89309 -12.71386 -12.59898 -12.47533 -11.97282 -11.90912 -11.71750 -11.59263 -11.54066 -11.21380 -11.04867 -10.85992 -10.71984 -10.47519 -9.82225 -9.59774 -9.24990 -8.95518 -8.71843 -8.23478 -6.97146 -6.46437 -4.04425 0.85088 2.13285 2.20036 2.96887 3.06340 3.12517 3.15545 3.16385 3.50155 3.95497 4.11315 4.18814 4.41316 4.52401 4.54559 4.68546 4.71352 5.08774 5.21529 5.28831 5.33506 5.45499 5.51622 5.53375 5.65562 5.70383 5.75151 5.79217 5.96338 6.07234 6.17362 6.26510 6.31079 6.77909 6.81016 6.94872 7.10981 7.18984 7.37521 7.61264 7.73366 7.97698 8.17414 8.98636 9.68554 10.71312 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.040097 B = 0.002480 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.139361 B =11288.471158 C =11662.256905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.041 4.041 3 C -0.016 4.016 4 F -0.139 7.139 5 C 0.539 3.461 6 O -0.506 6.506 7 N -0.649 5.649 8 C 0.030 3.970 9 C -0.065 4.065 10 C -0.179 4.179 11 C 0.148 3.852 12 O -0.174 6.174 13 C -0.392 4.392 14 H 0.091 0.909 15 C 0.039 3.961 16 N -0.861 5.861 17 Si 0.941 3.059 18 H -0.270 1.270 19 H -0.278 1.278 20 H -0.270 1.270 21 C -0.220 4.220 22 C -0.086 4.086 23 C -0.134 4.134 24 C -0.168 4.168 25 C -0.163 4.163 26 H 0.086 0.914 27 H 0.063 0.937 28 H 0.094 0.906 29 H 0.406 0.594 30 H 0.129 0.871 31 H 0.122 0.878 32 H 0.271 0.729 33 H 0.132 0.868 34 H 0.111 0.889 35 H 0.118 0.882 36 H 0.104 0.896 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.397 -21.766 1.581 23.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.044 4.044 3 C -0.038 4.038 4 F -0.118 7.118 5 C 0.326 3.674 6 O -0.384 6.384 7 N -0.293 5.293 8 C -0.063 4.063 9 C -0.085 4.085 10 C -0.199 4.199 11 C 0.094 3.906 12 O -0.077 6.077 13 C -0.468 4.468 14 H 0.109 0.891 15 C -0.165 4.165 16 N -0.495 5.495 17 Si 0.766 3.234 18 H -0.195 1.195 19 H -0.203 1.203 20 H -0.195 1.195 21 C -0.239 4.239 22 C -0.106 4.106 23 C -0.152 4.152 24 C -0.205 4.205 25 C -0.200 4.200 26 H 0.105 0.895 27 H 0.081 0.919 28 H 0.112 0.888 29 H 0.241 0.759 30 H 0.147 0.853 31 H 0.140 0.860 32 H 0.081 0.919 33 H 0.150 0.850 34 H 0.129 0.871 35 H 0.136 0.864 36 H 0.122 0.878 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 8.212 -21.502 1.257 23.051 hybrid contribution 1.347 0.754 0.681 1.688 sum 9.559 -20.748 1.939 22.927 Atomic orbital electron populations 1.21053 0.88694 1.03044 1.04314 1.21944 0.97340 0.91478 0.93659 1.19347 0.77363 0.94274 1.12801 1.91450 1.29664 1.97098 1.93558 1.18169 0.87066 0.83229 0.78931 1.90820 1.14157 1.86264 1.47119 1.43047 1.11201 1.04292 1.70715 1.17229 0.99849 0.85714 1.03469 1.20726 0.94501 0.96693 0.96577 1.20139 1.03754 0.92033 1.03992 1.19449 0.90885 0.87333 0.92906 1.84003 1.46820 1.15235 1.61691 1.21270 1.05485 0.89247 1.30841 0.89114 1.25298 0.95507 0.98303 0.97425 1.70031 1.12774 1.27017 1.39713 0.85778 0.78628 0.79473 0.79539 1.19485 1.20271 1.19497 1.20978 0.99815 0.98592 1.04558 1.20502 0.99913 0.92676 0.97507 1.21111 1.00308 0.88316 1.05459 1.23084 1.00521 0.97223 0.99624 1.23004 1.03727 1.01617 0.91689 0.89537 0.91875 0.88755 0.75927 0.85284 0.86035 0.91908 0.85026 0.87072 0.86404 0.87765 0.88112 0.88086 0.88206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.18 7.90 36.01 0.28 -0.89 16 2 C -0.04 -0.43 5.81 -101.12 -0.59 -1.02 16 3 C -0.02 -0.19 7.35 -37.69 -0.28 -0.47 16 4 F -0.14 -1.60 16.04 2.25 0.04 -1.57 16 5 C 0.54 7.91 7.45 -12.59 -0.09 7.82 16 6 O -0.51 -8.53 10.79 5.26 0.06 -8.47 16 7 N -0.65 -9.50 5.33 -10.84 -0.06 -9.55 16 8 C 0.03 0.53 6.29 -83.65 -0.53 0.00 16 9 C -0.07 -1.27 8.68 -39.41 -0.34 -1.61 16 10 C -0.18 -3.91 9.98 -39.42 -0.39 -4.30 16 11 C 0.15 3.59 6.65 -39.08 -0.26 3.33 16 12 O -0.17 -4.96 9.75 0.02 0.00 -4.96 16 13 C -0.39 -10.86 9.44 30.88 0.29 -10.56 16 14 H 0.09 2.30 5.29 -52.48 -0.28 2.02 16 15 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 16 N -0.86 -25.15 13.67 55.48 0.76 -24.39 16 17 Si 0.94 20.32 29.55 -169.99 -5.02 15.30 16 18 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 19 H -0.28 -5.88 7.11 56.52 0.40 -5.47 16 20 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 21 C -0.22 -4.70 9.13 -39.42 -0.36 -5.06 16 22 C -0.09 -1.56 9.96 -39.41 -0.39 -1.95 16 23 C -0.13 -1.11 5.70 -91.77 -0.52 -1.64 16 24 C -0.17 -1.07 9.76 -26.73 -0.26 -1.33 16 25 C -0.16 -1.09 10.10 -26.73 -0.27 -1.36 16 26 H 0.09 0.92 8.01 -51.93 -0.42 0.50 16 27 H 0.06 0.50 6.29 -51.93 -0.33 0.17 16 28 H 0.09 1.17 6.22 -51.93 -0.32 0.85 16 29 H 0.41 4.81 8.38 -40.82 -0.34 4.46 16 30 H 0.13 2.42 6.26 -52.48 -0.33 2.09 16 31 H 0.12 2.56 8.06 -52.48 -0.42 2.14 16 32 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 33 H 0.13 2.78 5.71 -52.49 -0.30 2.48 16 34 H 0.11 1.66 8.06 -52.48 -0.42 1.23 16 35 H 0.12 0.96 7.88 -51.93 -0.41 0.55 16 36 H 0.10 0.63 6.41 -51.92 -0.33 0.30 16 37 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 335.44 15.07 5.06 5.06 Total: -1.00 -31.12 335.44 -7.29 -38.40 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -4.30 Total: 8.26 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: -3.81 Total: -18.08 kcal Atomic # 7 Polarization: -34.65 SS G_CDS: 0.70 Total: -33.95 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: 0.06 Total: -13.43 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.12 -7.29 -38.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119593509.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.951 kcal (2) G-P(sol) polarization free energy of solvation -31.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds