Wall clock time and date at job start Tue Mar 31 2020 08:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33143 * 120.00178 * 2 1 4 4 F 1.35098 * 120.00251 * 172.55284 * 3 2 1 5 5 C 1.47262 * 119.99710 * 352.28082 * 3 2 1 6 6 O 1.21621 * 120.00010 * 353.28841 * 5 3 2 7 7 N 1.34775 * 120.00064 * 173.28871 * 5 3 2 8 8 C 1.39886 * 120.00379 * 184.53798 * 7 5 3 9 9 C 1.38952 * 120.00329 * 324.43623 * 8 7 5 10 10 C 1.37988 * 119.99579 * 179.71633 * 9 8 7 11 11 C 1.38921 * 120.00347 * 0.55388 * 10 9 8 12 12 O 1.35778 * 119.99622 * 179.69656 * 11 10 9 13 13 C 1.34810 * 116.99963 * 185.82913 * 12 11 10 14 14 H 1.08004 * 119.99995 * 5.41980 * 13 12 11 15 15 C 1.38637 * 119.99835 * 185.41876 * 13 12 11 16 16 N 1.31565 * 120.00075 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99765 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47140 * 59.99681 * 17 15 13 19 19 H 1.48494 * 109.47118 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47241 * 299.99841 * 17 15 13 21 21 C 1.38913 * 120.00786 * 359.72149 * 11 10 9 22 22 C 1.37997 * 120.00372 * 0.02562 * 21 11 10 23 23 C 1.50703 * 120.00041 * 179.97438 * 2 1 3 24 24 C 1.53000 * 117.49703 * 8.62340 * 23 2 1 25 25 C 1.52998 * 60.00032 * 252.51229 * 24 23 2 26 26 H 1.09005 * 109.46954 * 84.26340 * 1 2 3 27 27 H 1.09001 * 109.47479 * 204.26047 * 1 2 3 28 28 H 1.09002 * 109.47216 * 324.26783 * 1 2 3 29 29 H 0.97001 * 119.99767 * 4.54263 * 7 5 3 30 30 H 1.08005 * 119.99876 * 359.97438 * 9 8 7 31 31 H 1.08004 * 120.00162 * 180.25044 * 10 9 8 32 32 H 0.96994 * 120.00071 * 179.97438 * 16 15 13 33 33 H 1.07993 * 119.99776 * 179.97438 * 21 11 10 34 34 H 1.08003 * 120.00288 * 179.97438 * 22 21 11 35 35 H 1.08990 * 115.55039 * 154.33358 * 23 2 1 36 36 H 1.09007 * 117.49794 * 0.02562 * 24 23 2 37 37 H 1.08997 * 117.49429 * 145.01616 * 24 23 2 38 38 H 1.09003 * 117.49816 * 252.50805 * 25 24 23 39 39 H 1.09002 * 117.49529 * 107.49766 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1728 1.1530 0.0000 4 9 3.5152 1.1580 0.1516 5 6 1.4464 2.4226 -0.1713 6 8 0.2590 2.4131 -0.4343 7 7 2.0975 3.5949 -0.0367 8 6 1.3901 4.7998 -0.1051 9 6 0.3108 4.9236 -0.9714 10 6 -0.3905 6.1103 -1.0345 11 6 -0.0104 7.1849 -0.2404 12 8 -0.6968 8.3545 -0.3071 13 6 -0.2053 9.3937 0.3972 14 1 0.7413 9.2998 0.9087 15 6 -0.9148 10.5828 0.4648 16 7 -2.0677 10.6973 -0.1588 17 14 -0.2333 12.0228 1.4400 18 1 1.0827 12.4217 0.8796 19 1 -1.1747 13.1681 1.3548 20 1 -0.0660 11.6237 2.8605 21 6 1.0721 7.0632 0.6216 22 6 1.7705 5.8749 0.6887 23 6 2.2605 -1.3051 0.0006 24 6 1.4517 -2.5879 -0.2023 25 6 2.0260 -2.2557 1.1763 26 1 -0.3633 0.1027 -1.0226 27 1 -0.3634 -0.9369 0.4222 28 1 -0.3634 0.8342 0.6002 29 1 3.0567 3.6032 0.1076 30 1 0.0182 4.0897 -1.5922 31 1 -1.2320 6.2053 -1.7048 32 1 -2.5643 11.5291 -0.1112 33 1 1.3677 7.8988 1.2385 34 1 2.6124 5.7804 1.3586 35 1 3.2631 -1.2693 -0.4253 36 1 0.3746 -2.4878 -0.3367 37 1 1.9222 -3.3962 -0.7621 38 1 2.8743 -2.8456 1.5236 39 1 1.3267 -1.9372 1.9494 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119593509.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:50:53 Heat of formation + Delta-G solvation = -52.656824 kcal Electronic energy + Delta-G solvation = -23639.049609 eV Core-core repulsion = 19848.779259 eV Total energy + Delta-G solvation = -3790.270350 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.91532 -41.61967 -40.47228 -39.06145 -38.14826 -35.55924 -34.17284 -33.98335 -31.90191 -30.05053 -28.28559 -27.32231 -25.59505 -23.96100 -23.26416 -23.03734 -21.71723 -20.11375 -19.88667 -19.04817 -18.94463 -18.15320 -17.37637 -17.14532 -16.45777 -16.36864 -16.07069 -15.68704 -15.46574 -15.35137 -15.14169 -15.00909 -14.55856 -14.25612 -14.00867 -13.70700 -13.65741 -13.45184 -13.22424 -13.10648 -12.72058 -12.65795 -12.41988 -12.30242 -12.14431 -11.84085 -11.44293 -11.40354 -11.12328 -10.77150 -10.55372 -9.87309 -9.79497 -8.65468 -8.45901 -6.13286 -0.11983 0.50236 0.59074 1.37105 1.47335 1.53487 1.81335 1.89870 2.19201 2.80252 2.93076 3.06870 3.15761 3.45581 3.49411 3.74465 3.79020 4.01142 4.03094 4.11026 4.11557 4.47479 4.51558 4.62091 4.65848 4.72051 4.79753 4.83106 4.97163 5.00520 5.07319 5.15695 5.21439 5.24446 5.25998 5.39064 5.47747 5.52352 5.65300 6.01576 6.10493 6.35932 6.95308 6.98663 7.77957 8.77044 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.040097 B = 0.002480 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.139361 B =11288.471158 C =11662.256905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.016 4.016 3 C -0.037 4.037 4 F -0.135 7.135 5 C 0.539 3.461 6 O -0.531 6.531 7 N -0.645 5.645 8 C 0.057 3.943 9 C -0.069 4.069 10 C -0.188 4.188 11 C 0.111 3.889 12 O -0.228 6.228 13 C -0.413 4.413 14 H 0.106 0.894 15 C -0.024 4.024 16 N -0.921 5.921 17 Si 1.020 2.980 18 H -0.256 1.256 19 H -0.274 1.274 20 H -0.256 1.256 21 C -0.220 4.220 22 C -0.078 4.078 23 C -0.156 4.156 24 C -0.156 4.156 25 C -0.156 4.156 26 H 0.084 0.916 27 H 0.090 0.910 28 H 0.072 0.928 29 H 0.423 0.577 30 H 0.138 0.862 31 H 0.116 0.884 32 H 0.273 0.727 33 H 0.133 0.867 34 H 0.155 0.845 35 H 0.121 0.879 36 H 0.108 0.892 37 H 0.117 0.883 38 H 0.116 0.884 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.907 -24.519 2.933 27.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.020 4.020 3 C -0.059 4.059 4 F -0.114 7.114 5 C 0.329 3.671 6 O -0.410 6.410 7 N -0.291 5.291 8 C -0.036 4.036 9 C -0.088 4.088 10 C -0.208 4.208 11 C 0.060 3.940 12 O -0.135 6.135 13 C -0.489 4.489 14 H 0.123 0.877 15 C -0.222 4.222 16 N -0.559 5.559 17 Si 0.839 3.161 18 H -0.180 1.180 19 H -0.199 1.199 20 H -0.180 1.180 21 C -0.240 4.240 22 C -0.097 4.097 23 C -0.174 4.174 24 C -0.193 4.193 25 C -0.192 4.192 26 H 0.102 0.898 27 H 0.108 0.892 28 H 0.091 0.909 29 H 0.261 0.739 30 H 0.155 0.845 31 H 0.134 0.866 32 H 0.082 0.918 33 H 0.151 0.849 34 H 0.173 0.827 35 H 0.138 0.862 36 H 0.126 0.874 37 H 0.135 0.865 38 H 0.134 0.866 39 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 10.784 -24.331 2.611 26.742 hybrid contribution 0.657 1.126 0.214 1.321 sum 11.442 -23.205 2.825 26.026 Atomic orbital electron populations 1.21049 0.88648 1.03578 1.03886 1.22263 0.97501 0.92172 0.90021 1.18931 0.77660 0.93254 1.16083 1.91458 1.29095 1.96983 1.93887 1.18583 0.86914 0.83878 0.77764 1.90820 1.15398 1.86747 1.48053 1.43000 1.11985 1.03147 1.70924 1.17355 0.98370 0.86815 1.01100 1.20849 0.94971 0.95887 0.97139 1.20273 1.04116 0.92518 1.03864 1.19902 0.92260 0.87075 0.94793 1.83969 1.48884 1.16722 1.63907 1.21817 1.06366 0.89806 1.30948 0.87688 1.26627 0.95740 1.01312 0.98491 1.70189 1.14934 1.28108 1.42639 0.84628 0.78205 0.75089 0.78186 1.18030 1.19889 1.18026 1.21120 0.99120 0.99947 1.03786 1.20834 1.00364 0.91093 0.97457 1.21195 1.00686 0.87825 1.07738 1.23217 1.00641 0.96017 0.99418 1.23123 1.04207 1.00378 0.91528 0.89785 0.89189 0.90931 0.73922 0.84460 0.86603 0.91841 0.84933 0.82726 0.86151 0.87355 0.86485 0.86581 0.88175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.15 7.90 71.24 0.56 -1.59 16 2 C -0.02 -0.31 5.81 -17.59 -0.10 -0.41 16 3 C -0.04 -0.82 7.35 23.50 0.17 -0.65 16 4 F -0.14 -2.79 16.04 44.97 0.72 -2.07 16 5 C 0.54 14.90 7.45 86.62 0.64 15.55 16 6 O -0.53 -17.39 10.79 -4.10 -0.04 -17.43 16 7 N -0.65 -17.30 5.33 -306.47 -1.63 -18.93 16 8 C 0.06 1.94 6.29 38.20 0.24 2.18 16 9 C -0.07 -2.66 8.68 22.38 0.19 -2.47 16 10 C -0.19 -8.50 9.98 22.37 0.22 -8.28 16 11 C 0.11 5.57 6.65 22.60 0.15 5.72 16 12 O -0.23 -13.78 9.75 -22.85 -0.22 -14.01 16 13 C -0.41 -23.83 9.44 67.92 0.64 -23.19 16 14 H 0.11 5.44 5.29 -2.91 -0.02 5.43 16 15 C -0.02 -1.37 5.49 84.83 0.47 -0.90 16 16 N -0.92 -56.66 13.67 21.61 0.30 -56.36 16 17 Si 1.02 42.39 29.55 68.60 2.03 44.42 16 18 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 19 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 20 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 21 C -0.22 -9.38 9.13 22.37 0.20 -9.18 16 22 C -0.08 -2.64 9.96 22.38 0.22 -2.41 16 23 C -0.16 -2.12 5.70 -11.54 -0.07 -2.19 16 24 C -0.16 -1.42 9.76 30.59 0.30 -1.12 16 25 C -0.16 -1.52 10.10 30.59 0.31 -1.21 16 26 H 0.08 1.65 8.01 -2.38 -0.02 1.63 16 27 H 0.09 1.17 6.29 -2.39 -0.02 1.15 16 28 H 0.07 1.72 6.22 -2.39 -0.01 1.71 16 29 H 0.42 8.66 8.38 -92.71 -0.78 7.88 16 30 H 0.14 5.11 6.26 -2.91 -0.02 5.09 16 31 H 0.12 5.22 8.06 -2.91 -0.02 5.19 16 32 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 33 H 0.13 5.57 5.71 -2.91 -0.02 5.56 16 34 H 0.16 3.93 8.06 -2.91 -0.02 3.91 16 35 H 0.12 1.62 7.88 -2.39 -0.02 1.60 16 36 H 0.11 0.91 6.41 -2.38 -0.02 0.90 16 37 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -71.82 335.44 5.64 -66.18 By element: Atomic # 1 Polarization: 28.02 SS G_CDS: 0.33 Total: 28.36 kcal Atomic # 6 Polarization: -34.32 SS G_CDS: 4.16 Total: -30.16 kcal Atomic # 7 Polarization: -73.95 SS G_CDS: -1.34 Total: -75.29 kcal Atomic # 8 Polarization: -31.17 SS G_CDS: -0.27 Total: -31.44 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.72 Total: -2.07 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Total: -71.82 5.64 -66.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119593509.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.520 kcal (2) G-P(sol) polarization free energy of solvation -71.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds