Wall clock time and date at job start Tue Mar 31 2020 08:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 109.47192 * 2 1 4 4 C 1.38263 * 120.08236 * 270.01894 * 3 2 1 5 5 C 1.37966 * 119.71932 * 180.22561 * 4 3 2 6 6 C 1.38840 * 120.50204 * 359.91092 * 5 4 3 7 7 C 1.37673 * 119.84346 * 359.63150 * 6 5 4 8 8 C 1.37912 * 120.08912 * 89.99510 * 3 2 1 9 9 C 1.50601 * 122.85410 * 181.33944 * 7 6 5 10 10 C 1.53321 * 110.81526 * 339.65345 * 9 7 6 11 11 N 1.47225 * 107.61767 * 47.72001 * 10 9 7 12 12 C 1.34775 * 121.32349 * 115.78748 * 11 10 9 13 13 O 1.21282 * 120.00577 * 359.72286 * 12 11 10 14 14 C 1.50703 * 119.99768 * 179.71703 * 12 11 10 15 15 S 1.81002 * 109.47349 * 180.02562 * 14 12 11 16 16 C 1.76199 * 100.00182 * 180.02562 * 15 14 12 17 17 H 1.07999 * 119.99976 * 0.02562 * 16 15 14 18 18 C 1.38803 * 119.99949 * 179.97438 * 16 15 14 19 19 N 1.31630 * 119.99849 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00065 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46819 * 59.99977 * 20 18 16 22 22 H 1.48494 * 109.47285 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47086 * 300.00273 * 20 18 16 24 24 C 1.46676 * 117.34467 * 295.52099 * 11 10 9 25 25 H 1.08996 * 109.47641 * 300.00452 * 1 2 3 26 26 H 1.09006 * 109.46906 * 60.00829 * 1 2 3 27 27 H 1.09005 * 109.47510 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47169 * 239.99344 * 2 1 3 29 29 H 1.09006 * 109.46522 * 119.99845 * 2 1 3 30 30 H 1.07994 * 120.14559 * 0.20118 * 4 3 2 31 31 H 1.07991 * 119.74941 * 179.97438 * 5 4 3 32 32 H 1.07998 * 119.70734 * 0.04904 * 8 3 2 33 33 H 1.08995 * 109.20487 * 100.13577 * 9 7 6 34 34 H 1.09000 * 109.20097 * 219.42931 * 9 7 6 35 35 H 1.09005 * 109.90955 * 288.21131 * 10 9 7 36 36 H 1.09004 * 109.91841 * 167.23687 * 10 9 7 37 37 H 1.09005 * 109.46867 * 60.00428 * 14 12 11 38 38 H 1.09000 * 109.47235 * 300.00468 * 14 12 11 39 39 H 0.97005 * 119.99878 * 179.97438 * 19 18 16 40 40 H 1.09009 * 109.43215 * 164.66372 * 24 11 10 41 41 H 1.08999 * 109.43256 * 284.57092 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2630 2.0743 -1.1964 5 6 2.7273 3.3734 -1.1877 6 6 2.9628 4.0296 0.0130 7 6 2.7246 3.3834 1.2051 8 6 2.2627 2.0727 1.1933 9 6 2.9283 4.0397 2.5452 10 6 3.8677 5.2453 2.4242 11 7 3.4087 6.0552 1.2836 12 6 2.9464 7.3094 1.4559 13 8 2.8977 7.7905 2.5681 14 6 2.4899 8.1142 0.2663 15 16 1.9304 9.7443 0.8193 16 6 1.4673 10.4499 -0.7274 17 1 1.5753 9.8767 -1.6364 18 6 0.9628 11.7420 -0.7775 19 7 0.8307 12.4404 0.3304 20 14 0.4725 12.4904 -2.4173 21 1 -0.5936 11.6645 -3.0393 22 1 -0.0334 13.8695 -2.2006 23 1 1.6543 12.5315 -3.3157 24 6 3.4801 5.4449 -0.0482 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5139 0.8901 30 1 2.0808 1.5699 -2.1338 31 1 2.9080 3.8842 -2.1218 32 1 2.0823 1.5602 2.1266 33 1 1.9648 4.3707 2.9325 34 1 3.3623 3.3169 3.2361 35 1 4.8880 4.9047 2.2477 36 1 3.8292 5.8392 3.3375 37 1 1.6685 7.5965 -0.2291 38 1 3.3185 8.2325 -0.4320 39 1 0.4785 13.3435 0.2954 40 1 2.8732 6.0230 -0.7451 41 1 4.5155 5.4375 -0.3887 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001124094120.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:24:06 Heat of formation + Delta-G solvation = -24.846926 kcal Electronic energy + Delta-G solvation = -21876.879435 eV Core-core repulsion = 18654.028188 eV Total energy + Delta-G solvation = -3222.851247 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.51875 -38.97727 -36.36589 -33.91643 -33.23913 -32.42498 -30.23429 -30.14843 -28.43834 -25.85258 -25.45983 -23.80111 -23.10581 -22.32349 -20.33068 -18.66524 -17.67409 -16.88773 -16.41403 -15.90767 -15.51884 -15.14134 -14.92952 -14.80064 -14.40106 -14.05447 -13.97607 -13.67567 -13.54817 -13.09816 -12.98389 -12.77538 -12.61199 -12.33052 -12.28467 -11.85109 -11.81663 -11.45085 -11.32556 -11.04419 -11.03614 -11.01529 -10.80381 -10.73362 -9.81610 -9.40563 -9.05649 -8.91907 -8.65069 -8.49155 -8.22877 -6.49956 -6.21114 -3.91863 1.14960 1.21839 2.90510 3.03957 3.23792 3.25772 3.29365 3.50677 3.59535 4.20558 4.41422 4.47984 4.61811 4.70555 4.81394 4.88590 5.01234 5.06614 5.12718 5.14176 5.18639 5.24695 5.27121 5.41148 5.44385 5.47710 5.58893 5.60210 5.63168 5.80270 5.85054 5.87139 5.87746 5.92382 6.02580 6.11347 6.25365 6.41654 6.45988 6.57355 6.83920 7.55392 7.59740 8.35306 8.53649 9.23948 10.86278 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.018825 B = 0.003133 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.006726 B = 8934.114369 C = 9849.100540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.083 4.083 3 C -0.084 4.084 4 C -0.120 4.120 5 C -0.109 4.109 6 C -0.096 4.096 7 C -0.063 4.063 8 C -0.119 4.119 9 C -0.097 4.097 10 C 0.114 3.886 11 N -0.621 5.621 12 C 0.539 3.461 13 O -0.515 6.515 14 C -0.152 4.152 15 S -0.060 6.060 16 C -0.536 4.536 17 H 0.072 0.928 18 C 0.074 3.926 19 N -0.868 5.868 20 Si 0.919 3.081 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 C 0.150 3.850 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.121 0.879 31 H 0.125 0.875 32 H 0.119 0.881 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.099 0.901 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.269 0.731 40 H 0.099 0.901 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.468 -25.077 -1.762 25.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.121 4.121 3 C -0.084 4.084 4 C -0.138 4.138 5 C -0.127 4.127 6 C -0.097 4.097 7 C -0.063 4.063 8 C -0.137 4.137 9 C -0.135 4.135 10 C -0.009 4.009 11 N -0.357 5.357 12 C 0.328 3.672 13 O -0.389 6.389 14 C -0.302 4.302 15 S 0.167 5.833 16 C -0.684 4.684 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.199 1.199 24 C 0.027 3.973 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.139 0.861 31 H 0.143 0.857 32 H 0.137 0.863 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.088 0.912 36 H 0.117 0.883 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.079 0.921 40 H 0.117 0.883 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.330 -24.147 -0.007 24.532 hybrid contribution -0.310 -0.187 -2.494 2.520 sum 4.020 -24.334 -2.501 24.790 Atomic orbital electron populations 1.21755 0.94686 1.01622 1.02423 1.20525 0.96227 0.92654 1.02672 1.19801 0.99126 0.96229 0.93219 1.20904 1.00565 0.94855 0.97507 1.21026 0.99485 0.94933 0.97301 1.19829 1.00895 0.96006 0.92990 1.19494 0.98556 0.93738 0.94489 1.21013 1.00714 0.94322 0.97617 1.20937 1.01362 0.97274 0.93936 1.21619 0.96637 0.91470 0.91200 1.48044 1.65753 1.14408 1.07503 1.20279 0.75944 0.80226 0.90779 1.90691 1.53125 1.69161 1.25909 1.23566 1.03926 1.03727 0.98997 1.85396 1.81963 1.03223 1.12734 1.22818 1.49736 1.02377 0.93452 0.90986 1.24990 0.94990 0.95963 0.97607 1.70010 1.42683 1.10828 1.26775 0.86227 0.78929 0.78126 0.82241 1.19933 1.20808 1.19919 1.20490 1.01388 0.90154 0.85315 0.92486 0.92483 0.92466 0.91127 0.91168 0.86103 0.85735 0.86273 0.89955 0.89878 0.91195 0.88272 0.89241 0.89196 0.92123 0.88303 0.90280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.89 37.16 0.37 -0.65 16 2 C -0.08 -0.59 6.07 -27.88 -0.17 -0.76 16 3 C -0.08 -0.78 5.13 -104.73 -0.54 -1.32 16 4 C -0.12 -1.13 9.71 -39.67 -0.39 -1.51 16 5 C -0.11 -1.10 9.62 -39.46 -0.38 -1.48 16 6 C -0.10 -1.11 5.82 -104.55 -0.61 -1.71 16 7 C -0.06 -0.71 5.76 -104.60 -0.60 -1.31 16 8 C -0.12 -1.18 9.25 -39.43 -0.36 -1.55 16 9 C -0.10 -1.05 5.88 -27.77 -0.16 -1.21 16 10 C 0.11 1.41 6.47 -3.48 -0.02 1.38 16 11 N -0.62 -9.20 2.93 -174.06 -0.51 -9.71 16 12 C 0.54 10.47 7.74 -10.98 -0.09 10.39 16 13 O -0.51 -11.86 15.35 5.56 0.09 -11.77 16 14 C -0.15 -3.13 4.58 36.01 0.16 -2.96 16 15 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 16 C -0.54 -15.29 9.50 30.94 0.29 -15.00 16 17 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 18 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 19 N -0.87 -26.26 13.22 55.49 0.73 -25.52 16 20 Si 0.92 21.42 29.55 -169.99 -5.02 16.40 16 21 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 24 C 0.15 1.80 6.08 -5.04 -0.03 1.77 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 29 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 30 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 31 H 0.12 1.03 8.05 -52.49 -0.42 0.61 16 32 H 0.12 0.99 8.05 -52.49 -0.42 0.57 16 33 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.08 0.69 8.11 -51.93 -0.42 0.27 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.10 1.36 7.07 -51.93 -0.37 0.99 16 37 H 0.09 1.73 7.58 -51.91 -0.39 1.34 16 38 H 0.09 1.70 8.11 -51.92 -0.42 1.28 16 39 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 40 H 0.10 1.19 6.19 -51.92 -0.32 0.86 16 41 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 352.31 15.07 5.31 5.31 Total: -1.00 -34.09 352.31 -10.35 -44.43 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -6.11 Total: -1.38 kcal Atomic # 6 Polarization: -11.29 SS G_CDS: -2.62 Total: -13.91 kcal Atomic # 7 Polarization: -35.46 SS G_CDS: 0.22 Total: -35.23 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.09 Total: -11.77 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.09 -10.35 -44.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001124094120.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.587 kcal (2) G-P(sol) polarization free energy of solvation -34.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds