Wall clock time and date at job start Tue Mar 31 2020 08:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 109.47192 * 2 1 4 4 C 1.38263 * 120.08236 * 270.01894 * 3 2 1 5 5 C 1.37966 * 119.71932 * 180.22561 * 4 3 2 6 6 C 1.38840 * 120.50204 * 359.91092 * 5 4 3 7 7 C 1.37673 * 119.84346 * 359.63150 * 6 5 4 8 8 C 1.37912 * 120.08912 * 89.99510 * 3 2 1 9 9 C 1.50601 * 122.85410 * 181.33944 * 7 6 5 10 10 C 1.53321 * 110.81526 * 339.65345 * 9 7 6 11 11 N 1.47225 * 107.61767 * 47.72001 * 10 9 7 12 12 C 1.34775 * 121.32349 * 115.78748 * 11 10 9 13 13 O 1.21282 * 120.00577 * 359.72286 * 12 11 10 14 14 C 1.50703 * 119.99768 * 179.71703 * 12 11 10 15 15 S 1.81002 * 109.47349 * 180.02562 * 14 12 11 16 16 C 1.76199 * 100.00182 * 180.02562 * 15 14 12 17 17 H 1.07999 * 119.99976 * 0.02562 * 16 15 14 18 18 C 1.38803 * 119.99949 * 179.97438 * 16 15 14 19 19 N 1.31630 * 119.99849 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00065 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46819 * 59.99977 * 20 18 16 22 22 H 1.48494 * 109.47285 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47086 * 300.00273 * 20 18 16 24 24 C 1.46676 * 117.34467 * 295.52099 * 11 10 9 25 25 H 1.08996 * 109.47641 * 300.00452 * 1 2 3 26 26 H 1.09006 * 109.46906 * 60.00829 * 1 2 3 27 27 H 1.09005 * 109.47510 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47169 * 239.99344 * 2 1 3 29 29 H 1.09006 * 109.46522 * 119.99845 * 2 1 3 30 30 H 1.07994 * 120.14559 * 0.20118 * 4 3 2 31 31 H 1.07991 * 119.74941 * 179.97438 * 5 4 3 32 32 H 1.07998 * 119.70734 * 0.04904 * 8 3 2 33 33 H 1.08995 * 109.20487 * 100.13577 * 9 7 6 34 34 H 1.09000 * 109.20097 * 219.42931 * 9 7 6 35 35 H 1.09005 * 109.90955 * 288.21131 * 10 9 7 36 36 H 1.09004 * 109.91841 * 167.23687 * 10 9 7 37 37 H 1.09005 * 109.46867 * 60.00428 * 14 12 11 38 38 H 1.09000 * 109.47235 * 300.00468 * 14 12 11 39 39 H 0.97005 * 119.99878 * 179.97438 * 19 18 16 40 40 H 1.09009 * 109.43215 * 164.66372 * 24 11 10 41 41 H 1.08999 * 109.43256 * 284.57092 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2630 2.0743 -1.1964 5 6 2.7273 3.3734 -1.1877 6 6 2.9628 4.0296 0.0130 7 6 2.7246 3.3834 1.2051 8 6 2.2627 2.0727 1.1933 9 6 2.9283 4.0397 2.5452 10 6 3.8677 5.2453 2.4242 11 7 3.4087 6.0552 1.2836 12 6 2.9464 7.3094 1.4559 13 8 2.8977 7.7905 2.5681 14 6 2.4899 8.1142 0.2663 15 16 1.9304 9.7443 0.8193 16 6 1.4673 10.4499 -0.7274 17 1 1.5753 9.8767 -1.6364 18 6 0.9628 11.7420 -0.7775 19 7 0.8307 12.4404 0.3304 20 14 0.4725 12.4904 -2.4173 21 1 -0.5936 11.6645 -3.0393 22 1 -0.0334 13.8695 -2.2006 23 1 1.6543 12.5315 -3.3157 24 6 3.4801 5.4449 -0.0482 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5139 0.8901 30 1 2.0808 1.5699 -2.1338 31 1 2.9080 3.8842 -2.1218 32 1 2.0823 1.5602 2.1266 33 1 1.9648 4.3707 2.9325 34 1 3.3623 3.3169 3.2361 35 1 4.8880 4.9047 2.2477 36 1 3.8292 5.8392 3.3375 37 1 1.6685 7.5965 -0.2291 38 1 3.3185 8.2325 -0.4320 39 1 0.4785 13.3435 0.2954 40 1 2.8732 6.0230 -0.7451 41 1 4.5155 5.4375 -0.3887 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001124094120.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:24:06 Heat of formation + Delta-G solvation = -43.807110 kcal Electronic energy + Delta-G solvation = -21877.701610 eV Core-core repulsion = 18654.028188 eV Total energy + Delta-G solvation = -3223.673422 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.53188 -40.15767 -37.46887 -34.72535 -34.58665 -34.18878 -31.41773 -30.99614 -29.62554 -27.68302 -26.71552 -24.73323 -23.85333 -23.13387 -21.36379 -20.06677 -19.32619 -18.20652 -17.56150 -17.01018 -16.88227 -16.48338 -16.15953 -15.85603 -15.78286 -15.40487 -14.77833 -14.67818 -14.53971 -14.45698 -14.04796 -13.87624 -13.66707 -13.39873 -13.21718 -13.15539 -13.09708 -12.86604 -12.66180 -12.54007 -12.16665 -12.00225 -11.74607 -11.70036 -11.55018 -11.13250 -10.97303 -10.29342 -9.87553 -9.58809 -9.34286 -8.68755 -8.34915 -6.13784 0.38263 0.46638 1.23296 1.44006 1.44428 1.51767 1.54853 2.03859 2.26891 2.75977 2.99143 3.22260 3.58658 3.64806 3.77020 3.92205 3.95132 4.13137 4.16644 4.22633 4.27248 4.37151 4.44671 4.46577 4.53191 4.54846 4.61493 4.71814 4.78104 4.82116 4.93299 5.06131 5.09093 5.15409 5.23693 5.38478 5.40398 5.41002 5.54604 5.63368 5.73702 6.10003 6.19044 6.25583 7.05901 7.07121 8.74189 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.018825 B = 0.003133 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.006726 B = 8934.114369 C = 9849.100540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.082 4.082 3 C -0.087 4.087 4 C -0.125 4.125 5 C -0.114 4.114 6 C -0.113 4.113 7 C -0.080 4.080 8 C -0.126 4.126 9 C -0.090 4.090 10 C 0.109 3.891 11 N -0.609 5.609 12 C 0.538 3.462 13 O -0.562 6.562 14 C -0.125 4.125 15 S -0.150 6.150 16 C -0.547 4.547 17 H 0.083 0.917 18 C 0.013 3.987 19 N -0.912 5.912 20 Si 0.999 3.001 21 H -0.262 1.262 22 H -0.279 1.279 23 H -0.261 1.261 24 C 0.146 3.854 25 H 0.046 0.954 26 H 0.050 0.950 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.141 0.859 31 H 0.141 0.859 32 H 0.133 0.867 33 H 0.064 0.936 34 H 0.110 0.890 35 H 0.096 0.904 36 H 0.081 0.919 37 H 0.104 0.896 38 H 0.110 0.890 39 H 0.271 0.729 40 H 0.098 0.902 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.788 -27.503 -4.088 28.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.119 4.119 3 C -0.087 4.087 4 C -0.143 4.143 5 C -0.132 4.132 6 C -0.114 4.114 7 C -0.080 4.080 8 C -0.144 4.144 9 C -0.127 4.127 10 C -0.012 4.012 11 N -0.343 5.343 12 C 0.326 3.674 13 O -0.441 6.441 14 C -0.276 4.276 15 S 0.077 5.923 16 C -0.694 4.694 17 H 0.101 0.899 18 C -0.191 4.191 19 N -0.548 5.548 20 Si 0.820 3.180 21 H -0.187 1.187 22 H -0.204 1.204 23 H -0.185 1.185 24 C 0.024 3.976 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.090 0.910 28 H 0.101 0.899 29 H 0.097 0.903 30 H 0.159 0.841 31 H 0.158 0.842 32 H 0.151 0.849 33 H 0.083 0.917 34 H 0.129 0.871 35 H 0.114 0.886 36 H 0.099 0.901 37 H 0.122 0.878 38 H 0.128 0.872 39 H 0.080 0.920 40 H 0.116 0.884 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 4.670 -26.637 -2.352 27.145 hybrid contribution -0.366 0.375 -1.759 1.836 sum 4.304 -26.262 -4.111 26.928 Atomic orbital electron populations 1.21747 0.94654 1.02348 1.01662 1.20569 0.96118 0.91407 1.03784 1.20126 0.98269 0.97283 0.92987 1.21214 0.99880 0.94715 0.98482 1.21241 0.99183 0.95374 0.97439 1.19841 1.02181 0.95610 0.93767 1.19615 0.99499 0.94496 0.94379 1.21208 1.00516 0.93959 0.98678 1.20871 1.00174 0.96980 0.94710 1.21834 0.98428 0.91385 0.89601 1.48019 1.63679 1.12935 1.09671 1.20053 0.76249 0.81573 0.89550 1.90673 1.55561 1.70630 1.27204 1.23376 1.04874 0.99555 0.99790 1.85577 1.82898 1.08790 1.14987 1.23161 1.49796 1.02984 0.93498 0.89867 1.26144 0.94625 0.96396 1.01964 1.70181 1.43745 1.11287 1.29586 0.84997 0.79060 0.77114 0.76789 1.18656 1.20388 1.18513 1.20725 1.02915 0.90527 0.83478 0.93436 0.93050 0.91045 0.89871 0.90254 0.84136 0.84155 0.84928 0.91720 0.87142 0.88630 0.90068 0.87797 0.87160 0.91961 0.88373 0.88021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.89 71.98 0.71 -0.99 16 2 C -0.08 -0.92 6.07 29.85 0.18 -0.74 16 3 C -0.09 -1.40 5.13 -19.94 -0.10 -1.50 16 4 C -0.13 -2.01 9.71 22.21 0.22 -1.80 16 5 C -0.11 -2.03 9.62 22.35 0.22 -1.81 16 6 C -0.11 -2.38 5.82 -19.82 -0.12 -2.49 16 7 C -0.08 -1.66 5.76 -19.85 -0.11 -1.78 16 8 C -0.13 -2.25 9.25 22.37 0.21 -2.04 16 9 C -0.09 -1.83 5.88 29.92 0.18 -1.65 16 10 C 0.11 2.63 6.47 86.35 0.56 3.19 16 11 N -0.61 -17.62 2.93 -823.00 -2.41 -20.03 16 12 C 0.54 21.13 7.74 87.66 0.68 21.81 16 13 O -0.56 -26.97 15.35 -3.04 -0.05 -27.02 16 14 C -0.12 -5.15 4.58 71.24 0.33 -4.83 16 15 S -0.15 -8.47 20.57 -56.49 -1.16 -9.63 16 16 C -0.55 -31.45 9.50 67.96 0.65 -30.80 16 17 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 18 C 0.01 0.77 5.49 84.86 0.47 1.24 16 19 N -0.91 -56.41 13.22 21.65 0.29 -56.12 16 20 Si 1.00 43.66 29.55 68.60 2.03 45.69 16 21 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 22 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 23 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 24 C 0.15 3.22 6.08 85.63 0.52 3.74 16 25 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 27 H 0.07 0.62 8.14 -2.38 -0.02 0.61 16 28 H 0.08 0.75 8.09 -2.39 -0.02 0.73 16 29 H 0.08 0.77 8.09 -2.38 -0.02 0.75 16 30 H 0.14 1.65 8.06 -2.91 -0.02 1.62 16 31 H 0.14 1.94 8.05 -2.91 -0.02 1.92 16 32 H 0.13 1.92 8.05 -2.91 -0.02 1.89 16 33 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.11 1.61 8.11 -2.39 -0.02 1.60 16 35 H 0.10 1.83 8.14 -2.38 -0.02 1.81 16 36 H 0.08 2.27 7.07 -2.39 -0.02 2.25 16 37 H 0.10 3.96 7.58 -2.39 -0.02 3.94 16 38 H 0.11 4.07 8.11 -2.40 -0.02 4.05 16 39 H 0.27 15.60 8.31 -92.70 -0.77 14.83 16 40 H 0.10 2.17 6.19 -2.38 -0.01 2.15 16 41 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -76.11 352.31 4.28 -71.83 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: 1.01 Total: 15.75 kcal Atomic # 6 Polarization: -25.04 SS G_CDS: 4.57 Total: -20.47 kcal Atomic # 7 Polarization: -74.03 SS G_CDS: -2.12 Total: -76.15 kcal Atomic # 8 Polarization: -26.97 SS G_CDS: -0.05 Total: -27.02 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 16 Polarization: -8.47 SS G_CDS: -1.16 Total: -9.63 kcal Total: -76.11 4.28 -71.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001124094120.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.020 kcal (2) G-P(sol) polarization free energy of solvation -76.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds