Wall clock time and date at job start Tue Mar 31 2020 08:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39538 * 120.13446 * 178.07379 * 3 2 1 5 5 C 1.37978 * 119.85150 * 179.74124 * 4 3 2 6 6 C 1.38350 * 120.13813 * 0.53289 * 5 4 3 7 7 C 1.50698 * 119.85379 * 179.71589 * 6 5 4 8 8 N 1.46501 * 109.47525 * 270.02637 * 7 6 5 9 9 C 1.34771 * 120.00339 * 180.02562 * 8 7 6 10 10 O 1.21548 * 120.00103 * 0.02562 * 9 8 7 11 11 C 1.47883 * 120.00201 * 179.97438 * 9 8 7 12 12 C 1.39924 * 120.02482 * 359.72370 * 11 9 8 13 13 C 1.38325 * 120.35818 * 179.73696 * 12 11 9 14 14 C 1.37755 * 120.41464 * 0.56513 * 13 12 11 15 15 C 1.40751 * 120.03701 * 359.69260 * 14 13 12 16 16 C 1.41434 * 120.18015 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00151 * 150.17926 * 16 15 14 18 18 C 1.39935 * 120.00091 * 330.18010 * 16 15 14 19 19 N 1.30834 * 120.00199 * 161.72541 * 18 16 15 20 20 Si 1.86799 * 120.00034 * 341.73102 * 18 16 15 21 21 H 1.48501 * 109.47390 * 95.40845 * 20 18 16 22 22 H 1.48503 * 109.47218 * 215.41251 * 20 18 16 23 23 H 1.48503 * 109.46911 * 335.40885 * 20 18 16 24 24 C 1.38993 * 120.02818 * 179.97438 * 11 9 8 25 25 C 1.38335 * 120.28914 * 359.74388 * 6 5 4 26 26 C 1.37973 * 120.14479 * 359.97438 * 25 6 5 27 27 H 4.52065 * 14.02071 * 359.97438 * 4 2 1 28 28 H 1.07999 * 120.07470 * 0.02562 * 4 3 2 29 29 H 1.07999 * 119.93125 * 180.27249 * 5 4 3 30 30 H 1.09005 * 109.47291 * 30.02298 * 7 6 5 31 31 H 1.09002 * 109.47107 * 150.02594 * 7 6 5 32 32 H 0.96999 * 119.99812 * 359.97438 * 8 7 6 33 33 H 1.07999 * 119.82025 * 0.02562 * 12 11 9 34 34 H 1.08000 * 119.79819 * 180.27982 * 13 12 11 35 35 H 1.08003 * 119.98611 * 179.71482 * 14 13 12 36 36 H 0.96993 * 120.00276 * 180.02562 * 19 18 16 37 37 H 1.08008 * 120.20106 * 359.95672 * 24 11 9 38 38 H 1.08002 * 119.93133 * 179.97438 * 25 6 5 39 39 H 1.08000 * 120.07739 * 180.02562 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3060 1.2071 -0.0406 5 6 4.6857 1.2011 -0.0349 6 6 5.3750 0.0020 -0.0003 7 6 6.8820 0.0027 -0.0008 8 7 7.3700 -0.0365 -1.3816 9 6 8.6949 -0.0434 -1.6282 10 8 9.4851 -0.0176 -0.7050 11 6 9.1875 -0.0836 -3.0221 12 6 8.2784 -0.1203 -4.0851 13 6 8.7314 -0.1526 -5.3916 14 6 10.0823 -0.1606 -5.6613 15 6 11.0119 -0.1295 -4.6049 16 6 12.3995 -0.1371 -4.8784 17 1 13.0861 0.3482 -4.2006 18 6 12.8828 -0.7735 -6.0271 19 7 14.0788 -0.4922 -6.4767 20 14 11.8202 -2.0245 -6.9189 21 1 11.0991 -1.3574 -8.0325 22 1 12.6801 -3.1059 -7.4633 23 1 10.8367 -2.6049 -5.9696 24 6 10.5538 -0.0902 -3.2770 25 6 4.6869 -1.1976 0.0342 26 6 3.3072 -1.2052 0.0348 27 1 -1.0500 -0.0011 -0.0005 28 1 2.7690 2.1436 -0.0716 29 1 5.2288 2.1342 -0.0618 30 1 7.2451 0.9073 0.4872 31 1 7.2460 -0.8720 0.5381 32 1 6.7394 -0.0583 -2.1184 33 1 7.2172 -0.1188 -3.8845 34 1 8.0217 -0.1762 -6.2054 35 1 10.4284 -0.1905 -6.6840 36 1 14.4137 -0.9330 -7.2731 37 1 11.2592 -0.0654 -2.4595 38 1 5.2309 -2.1303 0.0607 39 1 2.7711 -2.1423 0.0622 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001129115352.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:26:28 Heat of formation + Delta-G solvation = 55.337139 kcal Electronic energy + Delta-G solvation = -22219.841135 eV Core-core repulsion = 18865.022979 eV Total energy + Delta-G solvation = -3354.818156 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.116 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.99899 -39.16390 -37.33217 -35.26985 -33.79414 -33.52256 -31.34248 -31.27534 -30.33938 -29.93876 -26.62106 -25.13399 -23.12223 -23.00458 -21.95524 -20.68737 -20.04754 -19.29402 -18.09293 -16.63528 -16.21113 -15.87827 -15.81052 -15.67450 -15.07046 -14.68709 -14.51952 -13.82473 -13.78391 -13.75481 -13.52846 -13.25928 -12.77463 -12.74841 -12.64865 -12.02438 -11.71317 -11.64986 -11.57121 -11.41608 -11.05907 -10.80153 -10.79413 -10.55934 -10.02887 -9.74390 -9.50566 -9.30744 -9.21002 -8.89546 -8.75004 -7.88487 -7.77365 -7.01709 -4.56504 0.51113 1.06348 1.89473 2.37346 2.50294 2.58688 3.04553 3.16567 3.24909 3.47770 3.59742 3.81943 3.88514 3.92124 4.45313 4.46689 4.55395 4.63943 5.05468 5.11754 5.22816 5.30098 5.36129 5.44771 5.63861 5.72858 5.75265 5.86332 6.01251 6.03009 6.11503 6.28114 6.37461 6.55702 6.60447 6.65009 6.68701 6.96368 7.15103 7.19522 7.39006 7.48455 7.73255 7.77339 7.98896 8.26971 8.51712 8.65506 8.70859 10.00390 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.026917 B = 0.002580 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.989101 B =10849.470660 C =11415.667428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.148 4.148 3 C 0.009 3.991 4 C -0.097 4.097 5 C -0.099 4.099 6 C -0.092 4.092 7 C 0.159 3.841 8 N -0.731 5.731 9 C 0.564 3.436 10 O -0.547 6.547 11 C -0.108 4.108 12 C -0.216 4.216 13 C -0.083 4.083 14 C -0.221 4.221 15 C 0.081 3.919 16 C -0.442 4.442 17 H 0.094 0.906 18 C 0.083 3.917 19 N -0.803 5.803 20 Si 0.911 3.089 21 H -0.269 1.269 22 H -0.289 1.289 23 H -0.244 1.244 24 C -0.135 4.135 25 C -0.099 4.099 26 C -0.097 4.097 27 H 0.224 0.776 28 H 0.128 0.872 29 H 0.132 0.868 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.402 0.598 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.286 0.714 37 H 0.116 0.884 38 H 0.132 0.868 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.814 -0.344 8.885 23.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.148 4.148 3 C 0.009 3.991 4 C -0.115 4.115 5 C -0.117 4.117 6 C -0.092 4.092 7 C 0.036 3.964 8 N -0.385 5.385 9 C 0.354 3.646 10 O -0.425 6.425 11 C -0.111 4.111 12 C -0.236 4.236 13 C -0.101 4.101 14 C -0.241 4.241 15 C 0.078 3.922 16 C -0.470 4.470 17 H 0.112 0.888 18 C -0.137 4.137 19 N -0.427 5.427 20 Si 0.737 3.263 21 H -0.196 1.196 22 H -0.217 1.217 23 H -0.167 1.167 24 C -0.156 4.156 25 C -0.117 4.117 26 C -0.115 4.115 27 H 0.241 0.759 28 H 0.146 0.854 29 H 0.150 0.850 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.238 0.762 33 H 0.114 0.886 34 H 0.117 0.883 35 H 0.121 0.879 36 H 0.097 0.903 37 H 0.134 0.866 38 H 0.150 0.850 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -20.952 -0.334 9.418 22.974 hybrid contribution -0.909 -0.516 -0.929 1.398 sum -21.861 -0.850 8.489 23.467 Atomic orbital electron populations 1.24903 0.95791 0.99329 0.99492 1.20083 0.92081 1.01321 1.01331 1.16005 0.86564 0.93974 1.02583 1.21203 0.94006 0.97069 0.99175 1.21083 0.93687 0.98089 0.98876 1.20101 0.95437 0.93432 1.00270 1.20157 0.88277 1.03272 0.84708 1.45991 1.07572 1.77217 1.07677 1.18804 0.81217 0.74715 0.89816 1.90704 1.55390 1.50100 1.46343 1.19404 0.94838 1.06537 0.90348 1.20385 0.96445 1.14317 0.92451 1.20513 0.95160 0.99114 0.95349 1.21179 0.93045 1.11780 0.98097 1.17705 0.93664 0.90067 0.90745 1.19517 0.91597 1.30005 1.05880 0.88824 1.26174 0.95315 0.96669 0.95496 1.69691 1.17694 1.35320 1.19962 0.86310 0.80036 0.79882 0.80056 1.19554 1.21655 1.16676 1.21278 0.92857 1.04930 0.96485 1.21078 0.93698 0.98058 0.98913 1.21200 0.93996 0.97070 0.99189 0.75907 0.85412 0.85018 0.90591 0.90602 0.76225 0.88632 0.88291 0.87884 0.90306 0.86629 0.85030 0.85420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.32 19.25 29.55 0.57 -0.75 16 2 C -0.15 -1.41 13.24 -38.83 -0.51 -1.92 16 3 C 0.01 0.09 5.72 -107.00 -0.61 -0.53 16 4 C -0.10 -0.88 9.75 -39.19 -0.38 -1.26 16 5 C -0.10 -0.91 9.68 -39.64 -0.38 -1.30 16 6 C -0.09 -0.92 5.25 -104.55 -0.55 -1.47 16 7 C 0.16 1.91 5.79 -5.19 -0.03 1.88 16 8 N -0.73 -10.54 5.50 -62.42 -0.34 -10.88 16 9 C 0.56 10.84 7.77 -12.31 -0.10 10.75 16 10 O -0.55 -12.10 16.33 5.32 0.09 -12.01 16 11 C -0.11 -2.28 5.87 -105.04 -0.62 -2.90 16 12 C -0.22 -4.14 9.55 -38.92 -0.37 -4.51 16 13 C -0.08 -1.68 10.01 -39.73 -0.40 -2.08 16 14 C -0.22 -5.13 7.17 -38.81 -0.28 -5.41 16 15 C 0.08 2.04 5.10 -106.87 -0.55 1.49 16 16 C -0.44 -11.83 9.57 -37.73 -0.36 -12.19 16 17 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 18 C 0.08 2.14 5.40 -17.34 -0.09 2.04 16 19 N -0.80 -21.07 13.93 55.55 0.77 -20.29 16 20 Si 0.91 20.27 24.52 -169.99 -4.17 16.10 16 21 H -0.27 -5.76 6.71 56.52 0.38 -5.38 16 22 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 23 H -0.24 -5.55 6.86 56.52 0.39 -5.16 16 24 C -0.14 -3.23 9.34 -38.44 -0.36 -3.59 16 25 C -0.10 -0.92 9.68 -39.64 -0.38 -1.30 16 26 C -0.10 -0.88 9.75 -39.20 -0.38 -1.26 16 27 H 0.22 0.77 7.80 -54.09 -0.42 0.34 16 28 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 29 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 30 H 0.08 0.92 8.08 -51.93 -0.42 0.50 16 31 H 0.08 0.92 8.08 -51.93 -0.42 0.50 16 32 H 0.40 5.14 6.48 -40.82 -0.26 4.88 16 33 H 0.10 1.49 6.38 -52.49 -0.33 1.15 16 34 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 35 H 0.10 2.37 4.72 -52.48 -0.25 2.12 16 36 H 0.29 6.78 8.30 -40.82 -0.34 6.44 16 37 H 0.12 2.82 7.64 -52.48 -0.40 2.41 16 38 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 39 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 LS Contribution 344.68 15.07 5.19 5.19 Total: -1.00 -29.89 344.68 -8.46 -38.35 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -4.22 Total: 7.84 kcal Atomic # 6 Polarization: -18.52 SS G_CDS: -5.79 Total: -24.30 kcal Atomic # 7 Polarization: -31.60 SS G_CDS: 0.43 Total: -31.17 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: 0.09 Total: -12.01 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -4.17 Total: 16.10 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.89 -8.46 -38.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129115352.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.688 kcal (2) G-P(sol) polarization free energy of solvation -29.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds