Wall clock time and date at job start Tue Mar 31 2020 08:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39538 * 120.13446 * 178.07379 * 3 2 1 5 5 C 1.37978 * 119.85150 * 179.74124 * 4 3 2 6 6 C 1.38350 * 120.13813 * 0.53289 * 5 4 3 7 7 C 1.50698 * 119.85379 * 179.71589 * 6 5 4 8 8 N 1.46501 * 109.47525 * 270.02637 * 7 6 5 9 9 C 1.34771 * 120.00339 * 180.02562 * 8 7 6 10 10 O 1.21548 * 120.00103 * 0.02562 * 9 8 7 11 11 C 1.47883 * 120.00201 * 179.97438 * 9 8 7 12 12 C 1.39924 * 120.02482 * 359.72370 * 11 9 8 13 13 C 1.38325 * 120.35818 * 179.73696 * 12 11 9 14 14 C 1.37755 * 120.41464 * 0.56513 * 13 12 11 15 15 C 1.40751 * 120.03701 * 359.69260 * 14 13 12 16 16 C 1.41434 * 120.18015 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00151 * 150.17926 * 16 15 14 18 18 C 1.39935 * 120.00091 * 330.18010 * 16 15 14 19 19 N 1.30834 * 120.00199 * 161.72541 * 18 16 15 20 20 Si 1.86799 * 120.00034 * 341.73102 * 18 16 15 21 21 H 1.48501 * 109.47390 * 95.40845 * 20 18 16 22 22 H 1.48503 * 109.47218 * 215.41251 * 20 18 16 23 23 H 1.48503 * 109.46911 * 335.40885 * 20 18 16 24 24 C 1.38993 * 120.02818 * 179.97438 * 11 9 8 25 25 C 1.38335 * 120.28914 * 359.74388 * 6 5 4 26 26 C 1.37973 * 120.14479 * 359.97438 * 25 6 5 27 27 H 4.52065 * 14.02071 * 359.97438 * 4 2 1 28 28 H 1.07999 * 120.07470 * 0.02562 * 4 3 2 29 29 H 1.07999 * 119.93125 * 180.27249 * 5 4 3 30 30 H 1.09005 * 109.47291 * 30.02298 * 7 6 5 31 31 H 1.09002 * 109.47107 * 150.02594 * 7 6 5 32 32 H 0.96999 * 119.99812 * 359.97438 * 8 7 6 33 33 H 1.07999 * 119.82025 * 0.02562 * 12 11 9 34 34 H 1.08000 * 119.79819 * 180.27982 * 13 12 11 35 35 H 1.08003 * 119.98611 * 179.71482 * 14 13 12 36 36 H 0.96993 * 120.00276 * 180.02562 * 19 18 16 37 37 H 1.08008 * 120.20106 * 359.95672 * 24 11 9 38 38 H 1.08002 * 119.93133 * 179.97438 * 25 6 5 39 39 H 1.08000 * 120.07739 * 180.02562 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3060 1.2071 -0.0406 5 6 4.6857 1.2011 -0.0349 6 6 5.3750 0.0020 -0.0003 7 6 6.8820 0.0027 -0.0008 8 7 7.3700 -0.0365 -1.3816 9 6 8.6949 -0.0434 -1.6282 10 8 9.4851 -0.0176 -0.7050 11 6 9.1875 -0.0836 -3.0221 12 6 8.2784 -0.1203 -4.0851 13 6 8.7314 -0.1526 -5.3916 14 6 10.0823 -0.1606 -5.6613 15 6 11.0119 -0.1295 -4.6049 16 6 12.3995 -0.1371 -4.8784 17 1 13.0861 0.3482 -4.2006 18 6 12.8828 -0.7735 -6.0271 19 7 14.0788 -0.4922 -6.4767 20 14 11.8202 -2.0245 -6.9189 21 1 11.0991 -1.3574 -8.0325 22 1 12.6801 -3.1059 -7.4633 23 1 10.8367 -2.6049 -5.9696 24 6 10.5538 -0.0902 -3.2770 25 6 4.6869 -1.1976 0.0342 26 6 3.3072 -1.2052 0.0348 27 1 -1.0500 -0.0011 -0.0005 28 1 2.7690 2.1436 -0.0716 29 1 5.2288 2.1342 -0.0618 30 1 7.2451 0.9073 0.4872 31 1 7.2460 -0.8720 0.5381 32 1 6.7394 -0.0583 -2.1184 33 1 7.2172 -0.1188 -3.8845 34 1 8.0217 -0.1762 -6.2054 35 1 10.4284 -0.1905 -6.6840 36 1 14.4137 -0.9330 -7.2731 37 1 11.2592 -0.0654 -2.4595 38 1 5.2309 -2.1303 0.0607 39 1 2.7711 -2.1423 0.0622 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001129115352.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:26:28 Heat of formation + Delta-G solvation = 38.577039 kcal Electronic energy + Delta-G solvation = -22220.567908 eV Core-core repulsion = 18865.022979 eV Total energy + Delta-G solvation = -3355.544929 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.116 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.15942 -40.27833 -39.02287 -36.34562 -35.57405 -34.49359 -32.69834 -32.01113 -31.87419 -31.30612 -27.75459 -26.86383 -24.56485 -23.67558 -22.93158 -22.40719 -21.61446 -19.89569 -19.71962 -18.19313 -17.41007 -17.30276 -16.73609 -16.68440 -16.44684 -16.01267 -15.79718 -15.45681 -15.17647 -14.58169 -14.45884 -14.44833 -14.31595 -14.04605 -13.91616 -13.66610 -13.32570 -12.84046 -12.68046 -12.45314 -12.32735 -12.28689 -12.10092 -11.76136 -11.56216 -11.40635 -11.21581 -10.88614 -10.21532 -9.97171 -9.62819 -9.55385 -9.49062 -8.91397 -6.55118 -0.18912 0.17997 0.39284 0.74272 1.25756 1.41851 1.48772 1.77928 1.85935 1.95155 2.12816 2.38673 2.65461 3.02185 3.33825 3.45631 3.62286 3.85345 3.92065 4.00835 4.26265 4.34258 4.39155 4.41440 4.55768 4.64564 4.67757 4.74634 4.88989 4.92006 5.02761 5.06481 5.15869 5.35190 5.39795 5.42695 5.45441 5.55110 5.65006 5.71913 5.84854 5.89797 6.10590 6.30158 6.55351 6.57708 6.66069 6.74369 7.21443 8.17536 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.026917 B = 0.002580 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.989101 B =10849.470660 C =11415.667428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.201 4.201 3 C 0.002 3.998 4 C -0.103 4.103 5 C -0.098 4.098 6 C -0.100 4.100 7 C 0.161 3.839 8 N -0.706 5.706 9 C 0.564 3.436 10 O -0.584 6.584 11 C -0.112 4.112 12 C -0.182 4.182 13 C -0.083 4.083 14 C -0.225 4.225 15 C 0.064 3.936 16 C -0.488 4.488 17 H 0.050 0.950 18 C 0.044 3.956 19 N -0.848 5.848 20 Si 0.968 3.032 21 H -0.247 1.247 22 H -0.278 1.278 23 H -0.251 1.251 24 C -0.166 4.166 25 C -0.098 4.098 26 C -0.103 4.103 27 H 0.259 0.741 28 H 0.140 0.860 29 H 0.141 0.859 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.413 0.587 33 H 0.147 0.853 34 H 0.146 0.854 35 H 0.106 0.894 36 H 0.295 0.705 37 H 0.090 0.910 38 H 0.141 0.859 39 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.116 -1.010 8.150 28.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.201 4.201 3 C 0.002 3.998 4 C -0.121 4.121 5 C -0.117 4.117 6 C -0.100 4.100 7 C 0.038 3.962 8 N -0.359 5.359 9 C 0.353 3.647 10 O -0.465 6.465 11 C -0.116 4.116 12 C -0.202 4.202 13 C -0.101 4.101 14 C -0.244 4.244 15 C 0.062 3.938 16 C -0.517 4.517 17 H 0.068 0.932 18 C -0.170 4.170 19 N -0.474 5.474 20 Si 0.790 3.210 21 H -0.172 1.172 22 H -0.204 1.204 23 H -0.175 1.175 24 C -0.186 4.186 25 C -0.117 4.117 26 C -0.121 4.121 27 H 0.275 0.725 28 H 0.158 0.842 29 H 0.159 0.841 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.251 0.749 33 H 0.164 0.836 34 H 0.164 0.836 35 H 0.124 0.876 36 H 0.106 0.894 37 H 0.109 0.891 38 H 0.159 0.841 39 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -26.303 -0.987 8.683 27.716 hybrid contribution 0.383 -0.231 -0.513 0.681 sum -25.920 -1.217 8.170 27.204 Atomic orbital electron populations 1.25810 0.96591 0.97153 0.97012 1.20448 0.92751 1.03427 1.03432 1.16257 0.87234 0.94374 1.01942 1.21375 0.93980 0.97591 0.99115 1.21204 0.93890 0.98232 0.98336 1.19886 0.93875 0.94144 1.02120 1.20234 0.89774 1.03220 0.82936 1.45813 1.05817 1.74849 1.09436 1.18565 0.82582 0.74978 0.88596 1.90696 1.56788 1.52024 1.47028 1.19687 0.93990 1.05422 0.92453 1.20983 0.98552 1.09284 0.91343 1.21035 0.94511 0.97295 0.97214 1.21385 0.94285 1.11176 0.97572 1.17789 0.93305 0.90819 0.91885 1.19452 0.92337 1.33089 1.06829 0.93180 1.26913 0.96529 0.97756 0.95834 1.69725 1.19334 1.37109 1.21282 0.85461 0.78562 0.77796 0.79202 1.17162 1.20444 1.17468 1.21210 0.94319 1.07445 0.95647 1.21199 0.93901 0.98200 0.98374 1.21372 0.93969 0.97595 0.99128 0.72528 0.84170 0.84074 0.90701 0.90709 0.74852 0.83590 0.83591 0.87609 0.89448 0.89146 0.84084 0.84175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 19.25 74.32 1.43 -0.28 16 2 C -0.20 -3.33 13.24 30.02 0.40 -2.93 16 3 C 0.00 0.04 5.72 -21.41 -0.12 -0.09 16 4 C -0.10 -1.63 9.75 22.52 0.22 -1.41 16 5 C -0.10 -1.57 9.68 22.23 0.22 -1.36 16 6 C -0.10 -1.74 5.25 -19.82 -0.10 -1.85 16 7 C 0.16 3.53 5.79 85.63 0.50 4.03 16 8 N -0.71 -18.40 5.50 -469.67 -2.58 -20.98 16 9 C 0.56 20.99 7.77 86.80 0.67 21.66 16 10 O -0.58 -26.17 16.33 -3.87 -0.06 -26.24 16 11 C -0.11 -4.59 5.87 -20.13 -0.12 -4.71 16 12 C -0.18 -6.15 9.55 22.70 0.22 -5.94 16 13 C -0.08 -2.97 10.01 22.18 0.22 -2.75 16 14 C -0.22 -10.05 7.17 22.77 0.16 -9.88 16 15 C 0.06 3.34 5.10 -21.32 -0.11 3.23 16 16 C -0.49 -28.09 9.57 23.47 0.22 -27.86 16 17 H 0.05 3.16 8.06 -2.91 -0.02 3.14 16 18 C 0.04 2.38 5.40 85.25 0.46 2.84 16 19 N -0.85 -46.92 13.93 21.82 0.30 -46.62 16 20 Si 0.97 41.71 24.52 68.60 1.68 43.40 16 21 H -0.25 -9.67 6.71 99.48 0.67 -9.00 16 22 H -0.28 -11.33 7.11 99.48 0.71 -10.63 16 23 H -0.25 -10.99 6.86 99.48 0.68 -10.30 16 24 C -0.17 -8.23 9.34 23.01 0.21 -8.02 16 25 C -0.10 -1.58 9.68 22.23 0.22 -1.36 16 26 C -0.10 -1.63 9.75 22.52 0.22 -1.41 16 27 H 0.26 0.63 7.80 -4.42 -0.03 0.60 16 28 H 0.14 1.78 8.06 -2.91 -0.02 1.75 16 29 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 30 H 0.07 1.71 8.08 -2.38 -0.02 1.69 16 31 H 0.07 1.71 8.08 -2.39 -0.02 1.69 16 32 H 0.41 8.73 6.48 -92.71 -0.60 8.13 16 33 H 0.15 3.51 6.38 -2.91 -0.02 3.49 16 34 H 0.15 3.99 8.06 -2.91 -0.02 3.96 16 35 H 0.11 4.65 4.72 -2.91 -0.01 4.64 16 36 H 0.30 14.53 8.30 -92.71 -0.77 13.76 16 37 H 0.09 4.81 7.64 -2.91 -0.02 4.79 16 38 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 39 H 0.14 1.78 8.06 -2.91 -0.02 1.75 16 Total: -1.00 -69.94 344.68 4.68 -65.26 By element: Atomic # 1 Polarization: 22.85 SS G_CDS: 0.42 Total: 23.27 kcal Atomic # 6 Polarization: -43.01 SS G_CDS: 4.92 Total: -38.09 kcal Atomic # 7 Polarization: -65.32 SS G_CDS: -2.28 Total: -67.60 kcal Atomic # 8 Polarization: -26.17 SS G_CDS: -0.06 Total: -26.24 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 1.68 Total: 43.40 kcal Total: -69.94 4.68 -65.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129115352.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.837 kcal (2) G-P(sol) polarization free energy of solvation -69.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds