Wall clock time and date at job start Tue Mar 31 2020 08:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46981 * 2 1 4 4 H 1.08994 * 109.46880 * 305.72744 * 3 2 1 5 5 C 1.50707 * 109.46923 * 185.73115 * 3 2 1 6 6 H 1.07995 * 119.99828 * 274.43823 * 5 3 2 7 7 C 1.37876 * 119.99604 * 94.44021 * 5 3 2 8 8 N 1.31513 * 119.99831 * 183.97228 * 7 5 3 9 9 Si 1.86800 * 120.00275 * 3.96793 * 7 5 3 10 10 H 1.48493 * 109.46899 * 93.77856 * 9 7 5 11 11 H 1.48502 * 109.46832 * 213.77943 * 9 7 5 12 12 H 1.48504 * 109.46998 * 333.77685 * 9 7 5 13 13 N 1.46496 * 109.47119 * 65.73247 * 3 2 1 14 14 C 1.34778 * 120.00423 * 274.99687 * 13 3 2 15 15 O 1.21393 * 119.99177 * 0.02562 * 14 13 3 16 16 C 1.49122 * 120.00377 * 180.02562 * 14 13 3 17 17 O 1.21615 * 120.00316 * 0.02562 * 16 14 13 18 18 C 1.41129 * 120.00133 * 180.02562 * 16 14 13 19 19 C 1.35782 * 120.00182 * 186.88227 * 18 16 14 20 20 C 1.46741 * 119.99966 * 11.30386 * 19 18 16 21 21 C 1.40119 * 120.16056 * 225.71528 * 20 19 18 22 22 C 1.37699 * 119.83648 * 179.74194 * 21 20 19 23 23 C 1.38766 * 120.16083 * 0.52609 * 22 21 20 24 24 F 1.35105 * 119.83782 * 179.74186 * 23 22 21 25 25 C 1.38772 * 120.32413 * 359.72474 * 23 22 21 26 26 C 1.37695 * 120.16214 * 0.02562 * 25 23 22 27 27 H 1.09005 * 109.46525 * 60.00370 * 1 2 3 28 28 H 1.08995 * 109.46846 * 180.02562 * 1 2 3 29 29 H 1.08991 * 109.47417 * 300.00180 * 1 2 3 30 30 H 1.08995 * 109.47864 * 239.99668 * 2 1 3 31 31 H 1.09010 * 109.46968 * 119.99772 * 2 1 3 32 32 H 0.97001 * 120.00666 * 179.97438 * 8 7 5 33 33 H 0.97006 * 119.99984 * 95.00174 * 13 3 2 34 34 H 1.07993 * 119.99661 * 6.88584 * 18 16 14 35 35 H 1.07991 * 119.99821 * 191.02361 * 19 18 16 36 36 H 1.08003 * 120.08207 * 359.97050 * 21 20 19 37 37 H 1.08004 * 119.91999 * 180.22596 * 22 21 20 38 38 H 1.08003 * 119.91440 * 179.97438 * 25 23 22 39 39 H 1.08002 * 120.07675 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5953 1.9851 -0.8342 5 6 3.5403 1.4449 -0.1419 6 1 4.1656 1.3424 0.7327 7 6 4.1146 1.5780 -1.3883 8 7 5.4207 1.5018 -1.5220 9 14 3.0376 1.8664 -2.8870 10 1 2.9276 3.3248 -3.1441 11 1 3.6436 1.1999 -4.0676 12 1 1.6856 1.3038 -2.6406 13 7 1.6675 2.0922 1.2591 14 6 0.4517 2.6586 1.3914 15 8 -0.3348 2.6300 0.4672 16 6 0.0728 3.3203 2.6729 17 8 0.8610 3.3494 3.5986 18 6 -1.2005 3.9130 2.8116 19 6 -1.4958 4.6353 3.9227 20 6 -0.4297 5.0104 4.8588 21 6 -0.6159 4.8508 6.2384 22 6 0.3909 5.2000 7.1105 23 6 1.5835 5.7190 6.6267 24 9 2.5650 6.0642 7.4886 25 6 1.7730 5.8847 5.2620 26 6 0.7771 5.5352 4.3777 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 5.8249 1.5950 -2.3988 33 1 2.2960 2.1147 1.9977 34 1 -1.9399 3.7919 2.0339 35 1 -2.5145 4.9377 4.1152 36 1 -1.5454 4.4515 6.6166 37 1 0.2502 5.0741 8.1739 38 1 2.7037 6.2896 4.8928 39 1 0.9260 5.6652 3.3159 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153702189.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:54:45 Heat of formation + Delta-G solvation = -63.235680 kcal Electronic energy + Delta-G solvation = -24376.672770 eV Core-core repulsion = 20585.943686 eV Total energy + Delta-G solvation = -3790.729084 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.01013 -40.63782 -39.09991 -37.97683 -35.38852 -33.95746 -32.38106 -31.47808 -31.33598 -29.83974 -27.77492 -25.91958 -23.43963 -23.01007 -22.57523 -21.13320 -19.69229 -19.04290 -18.11271 -17.76804 -16.79518 -16.38660 -16.27167 -15.71207 -15.55134 -15.28811 -14.71796 -14.44416 -14.16122 -13.92208 -13.77616 -13.41782 -13.33575 -13.29006 -12.83055 -12.51584 -12.28183 -12.00062 -11.90495 -11.83853 -11.28040 -11.13113 -10.99350 -10.72494 -10.70958 -10.07698 -9.99326 -9.86122 -9.27905 -9.24595 -9.03193 -8.75802 -8.23057 -8.14596 -6.27703 -4.32263 0.10675 1.08314 1.25364 2.29325 3.20332 3.30523 3.36720 3.46081 3.47742 3.71385 4.10863 4.27614 4.42133 4.53968 4.67251 4.79184 4.98082 5.02881 5.16438 5.25908 5.37428 5.66585 5.70118 5.81367 5.93188 5.98588 5.99378 6.01831 6.13734 6.16814 6.27965 6.56074 6.70040 6.71074 6.86123 6.91057 7.08630 7.23312 7.33147 7.44613 8.03574 8.44579 8.67415 8.77421 9.32848 10.83816 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.017837 B = 0.003752 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.362748 B = 7461.695384 C = 8381.427804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.126 4.126 3 C 0.231 3.769 4 H 0.057 0.943 5 C -0.533 4.533 6 H 0.080 0.920 7 C 0.083 3.917 8 N -0.886 5.886 9 Si 0.870 3.130 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.255 1.255 13 N -0.671 5.671 14 C 0.463 3.537 15 O -0.530 6.530 16 C 0.365 3.635 17 O -0.423 6.423 18 C -0.218 4.218 19 C -0.009 4.009 20 C -0.086 4.086 21 C -0.071 4.071 22 C -0.162 4.162 23 C 0.107 3.893 24 F -0.141 7.141 25 C -0.155 4.155 26 C -0.029 4.029 27 H 0.052 0.948 28 H 0.032 0.968 29 H 0.047 0.953 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.268 0.732 33 H 0.402 0.598 34 H 0.151 0.849 35 H 0.143 0.857 36 H 0.133 0.867 37 H 0.134 0.866 38 H 0.137 0.863 39 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.709 7.531 13.645 20.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.165 4.165 3 C 0.129 3.871 4 H 0.075 0.925 5 C -0.571 4.571 6 H 0.098 0.902 7 C -0.122 4.122 8 N -0.522 5.522 9 Si 0.696 3.304 10 H -0.200 1.200 11 H -0.209 1.209 12 H -0.179 1.179 13 N -0.321 5.321 14 C 0.245 3.755 15 O -0.410 6.410 16 C 0.242 3.758 17 O -0.298 6.298 18 C -0.237 4.237 19 C -0.027 4.027 20 C -0.086 4.086 21 C -0.089 4.089 22 C -0.181 4.181 23 C 0.088 3.912 24 F -0.120 7.120 25 C -0.174 4.174 26 C -0.047 4.047 27 H 0.071 0.929 28 H 0.051 0.949 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.237 0.763 34 H 0.169 0.831 35 H 0.160 0.840 36 H 0.151 0.849 37 H 0.152 0.848 38 H 0.155 0.845 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -13.598 7.516 13.347 20.482 hybrid contribution 0.095 0.098 -0.495 0.513 sum -13.503 7.614 12.852 20.136 Atomic orbital electron populations 1.21915 0.97391 0.99081 1.01922 1.22084 0.93691 0.99181 1.01505 1.19386 0.95908 0.89362 0.82439 0.92546 1.21002 0.88489 1.52116 0.95503 0.90201 1.24933 0.94889 0.93576 0.98812 1.69882 1.09707 1.48095 1.24478 0.86928 0.81704 0.79249 0.82480 1.19966 1.20936 1.17891 1.46694 1.13940 1.52887 1.18558 1.20657 0.84051 0.81594 0.89224 1.90705 1.50588 1.59039 1.40632 1.21523 0.87755 0.78723 0.87820 1.90712 1.51664 1.47548 1.39900 1.22516 0.99389 1.02203 0.99605 1.22745 0.98011 0.91329 0.90657 1.19056 0.94655 1.01575 0.93330 1.21033 0.98706 0.97784 0.91427 1.20950 0.92993 1.03260 1.00921 1.17925 0.86196 0.99713 0.87392 1.91497 1.61014 1.89817 1.69633 1.21014 1.01046 1.04048 0.91264 1.21064 0.90841 0.93389 0.99443 0.92928 0.94858 0.93388 0.91805 0.92843 0.92169 0.76308 0.83095 0.83984 0.84897 0.84781 0.84526 0.85517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 8.53 37.16 0.32 -2.48 16 2 C -0.13 -2.66 5.59 -26.73 -0.15 -2.81 16 3 C 0.23 5.34 1.83 -69.08 -0.13 5.21 16 4 H 0.06 1.40 4.60 -51.93 -0.24 1.16 16 5 C -0.53 -14.15 9.05 -34.44 -0.31 -14.46 16 6 H 0.08 2.26 8.06 -52.49 -0.42 1.84 16 7 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 8 N -0.89 -25.80 13.96 55.43 0.77 -25.03 16 9 Si 0.87 20.89 27.24 -169.99 -4.63 16.26 16 10 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.25 -5.96 6.46 56.52 0.37 -5.60 16 13 N -0.67 -13.55 5.02 -55.47 -0.28 -13.83 16 14 C 0.46 8.57 6.46 -11.74 -0.08 8.49 16 15 O -0.53 -10.80 13.53 5.46 0.07 -10.73 16 16 C 0.37 5.47 6.11 -33.97 -0.21 5.26 16 17 O -0.42 -6.66 12.31 5.26 0.06 -6.60 16 18 C -0.22 -2.52 9.42 -39.37 -0.37 -2.89 16 19 C -0.01 -0.08 9.80 -37.03 -0.36 -0.44 16 20 C -0.09 -0.92 4.39 -105.05 -0.46 -1.38 16 21 C -0.07 -0.67 9.80 -39.07 -0.38 -1.05 16 22 C -0.16 -1.63 10.01 -39.58 -0.40 -2.02 16 23 C 0.11 1.26 7.31 -39.19 -0.29 0.98 16 24 F -0.14 -1.75 17.26 2.25 0.04 -1.71 16 25 C -0.15 -1.85 10.01 -39.58 -0.40 -2.25 16 26 C -0.03 -0.35 6.73 -39.07 -0.26 -0.61 16 27 H 0.05 1.06 7.89 -51.93 -0.41 0.65 16 28 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.91 5.63 -51.93 -0.29 0.62 16 30 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 31 H 0.05 1.09 8.14 -51.92 -0.42 0.67 16 32 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 33 H 0.40 7.74 8.06 -40.82 -0.33 7.41 16 34 H 0.15 1.62 7.71 -52.49 -0.40 1.22 16 35 H 0.14 0.79 8.06 -52.49 -0.42 0.36 16 36 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 37 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 38 H 0.14 1.49 8.06 -52.48 -0.42 1.06 16 39 H 0.13 1.53 7.26 -52.49 -0.38 1.15 16 LS Contribution 334.67 15.07 5.04 5.04 Total: -1.00 -30.56 334.67 -7.10 -37.65 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -4.61 Total: 7.22 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: -3.57 Total: -8.28 kcal Atomic # 7 Polarization: -39.36 SS G_CDS: 0.50 Total: -38.86 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: 0.14 Total: -17.33 kcal Atomic # 9 Polarization: -1.75 SS G_CDS: 0.04 Total: -1.71 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.63 Total: 16.26 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.56 -7.10 -37.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153702189.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.582 kcal (2) G-P(sol) polarization free energy of solvation -30.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds