Wall clock time and date at job start Tue Mar 31 2020 08:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.50699 * 109.47053 * 175.00035 * 3 2 1 6 6 H 1.08004 * 120.00307 * 119.99902 * 5 3 2 7 7 C 1.37884 * 119.99822 * 299.99692 * 5 3 2 8 8 N 1.31514 * 120.00109 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99874 * 180.02562 * 7 5 3 10 10 H 1.48508 * 109.47158 * 89.99755 * 9 7 5 11 11 H 1.48494 * 109.47116 * 210.00006 * 9 7 5 12 12 H 1.48500 * 109.46922 * 330.00127 * 9 7 5 13 13 N 1.46499 * 109.46679 * 294.99474 * 3 2 1 14 14 C 1.34785 * 119.99572 * 85.00499 * 13 3 2 15 15 O 1.21384 * 120.00011 * 359.97438 * 14 13 3 16 16 C 1.49132 * 119.99832 * 179.97438 * 14 13 3 17 17 O 1.21626 * 119.99972 * 0.02562 * 16 14 13 18 18 C 1.41115 * 120.00308 * 179.97438 * 16 14 13 19 19 C 1.35777 * 120.00620 * 180.02562 * 18 16 14 20 20 C 1.46739 * 120.00378 * 179.97438 * 19 18 16 21 21 C 1.40123 * 120.16059 * 359.72781 * 20 19 18 22 22 C 1.37696 * 119.83561 * 179.76526 * 21 20 19 23 23 C 1.38768 * 120.16050 * 0.53074 * 22 21 20 24 24 F 1.35102 * 119.83400 * 179.71795 * 23 22 21 25 25 C 1.38770 * 120.32691 * 359.69731 * 23 22 21 26 26 C 1.37697 * 120.16274 * 0.04382 * 25 23 22 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 29 29 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 30 30 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 31 31 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 32 32 H 0.96997 * 119.99669 * 180.02562 * 8 7 5 33 33 H 0.96999 * 120.00274 * 264.99733 * 13 3 2 34 34 H 1.08002 * 119.99774 * 359.97438 * 18 16 14 35 35 H 1.08003 * 119.99925 * 0.02562 * 19 18 16 36 36 H 1.08006 * 120.08371 * 359.97438 * 21 20 19 37 37 H 1.08004 * 119.91878 * 180.22457 * 22 21 20 38 38 H 1.08001 * 119.91616 * 180.02562 * 25 23 22 39 39 H 1.07996 * 120.08431 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8889 -0.6523 7 6 4.1432 0.8784 1.2281 8 7 3.4062 0.3367 2.1730 9 14 6.0049 0.8813 1.3819 10 1 6.4417 2.1143 2.0850 11 1 6.4395 -0.3097 2.1551 12 1 6.6135 0.8416 0.0279 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6644 -1.3670 15 8 -0.3402 2.6319 -0.4337 16 6 0.0408 3.3315 -2.6412 17 8 0.8176 3.3635 -3.5766 18 6 -1.2339 3.9246 -2.7621 19 6 -1.5932 4.5316 -3.9223 20 6 -2.9189 5.1478 -4.0481 21 6 -3.8190 5.1070 -2.9749 22 6 -5.0595 5.6916 -3.0986 23 6 -5.4233 6.3106 -4.2861 24 9 -6.6442 6.8772 -4.4022 25 6 -4.5390 6.3509 -5.3548 26 6 -3.2931 5.7751 -5.2440 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8900 30 1 1.8934 -0.5137 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 3.8293 -0.0610 2.9499 33 1 2.2720 2.1231 -1.9978 34 1 -1.9241 3.8951 -1.9319 35 1 -0.9035 4.5601 -4.7529 36 1 -3.5392 4.6210 -2.0518 37 1 -5.7530 5.6641 -2.2710 38 1 -4.8288 6.8347 -6.2758 39 1 -2.6060 5.8068 -6.0766 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001153702194.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:54:47 Heat of formation + Delta-G solvation = -93.456397 kcal Electronic energy + Delta-G solvation = -23372.146432 eV Core-core repulsion = 19580.106879 eV Total energy + Delta-G solvation = -3792.039553 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.98524 -41.61568 -40.14737 -39.50328 -37.06589 -35.09156 -34.26844 -32.78867 -32.27677 -30.78085 -29.18294 -27.10241 -25.15387 -24.30284 -23.72597 -22.08339 -21.24688 -20.25252 -19.44988 -18.71420 -17.99099 -17.79298 -17.20367 -16.75253 -16.70986 -16.65378 -16.38374 -15.90911 -15.37221 -15.23948 -14.95034 -14.60886 -14.58987 -14.20998 -13.83553 -13.68123 -13.45548 -13.30253 -13.18936 -12.98156 -12.92017 -12.70595 -12.55039 -12.13443 -12.09264 -11.91281 -11.59569 -11.28026 -11.09715 -10.58235 -10.38637 -10.18206 -9.76713 -9.26975 -8.18301 -6.35569 -1.03913 0.21505 0.23790 1.27785 1.44649 1.45073 1.55776 2.07804 2.35647 2.43320 2.68855 3.11066 3.17666 3.41223 3.60313 3.68146 3.86876 4.07646 4.17755 4.27013 4.31986 4.48445 4.55800 4.72484 4.81380 4.84242 4.95863 5.02867 5.06867 5.10934 5.20927 5.25155 5.39807 5.45317 5.50280 5.56338 5.71020 5.79627 5.80899 6.07514 6.13095 6.69153 6.80354 7.20858 7.38425 8.86927 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.032884 B = 0.002428 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.271295 B =11530.967100 C =11960.514122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.123 4.123 3 C 0.273 3.727 4 H 0.010 0.990 5 C -0.553 4.553 6 H 0.068 0.932 7 C 0.019 3.981 8 N -0.911 5.911 9 Si 0.969 3.031 10 H -0.277 1.277 11 H -0.281 1.281 12 H -0.264 1.264 13 N -0.682 5.682 14 C 0.460 3.540 15 O -0.548 6.548 16 C 0.389 3.611 17 O -0.457 6.457 18 C -0.252 4.252 19 C 0.039 3.961 20 C -0.111 4.111 21 C -0.068 4.068 22 C -0.164 4.164 23 C 0.102 3.898 24 F -0.144 7.144 25 C -0.159 4.159 26 C -0.050 4.050 27 H 0.049 0.951 28 H 0.041 0.959 29 H 0.033 0.967 30 H 0.077 0.923 31 H 0.039 0.961 32 H 0.267 0.733 33 H 0.406 0.594 34 H 0.147 0.853 35 H 0.154 0.846 36 H 0.146 0.854 37 H 0.151 0.849 38 H 0.162 0.838 39 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.832 10.501 -15.607 23.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.162 4.162 3 C 0.171 3.829 4 H 0.028 0.972 5 C -0.591 4.591 6 H 0.086 0.914 7 C -0.181 4.181 8 N -0.549 5.549 9 Si 0.794 3.206 10 H -0.203 1.203 11 H -0.207 1.207 12 H -0.188 1.188 13 N -0.331 5.331 14 C 0.244 3.756 15 O -0.427 6.427 16 C 0.269 3.731 17 O -0.335 6.335 18 C -0.271 4.271 19 C 0.020 3.980 20 C -0.111 4.111 21 C -0.086 4.086 22 C -0.183 4.183 23 C 0.082 3.918 24 F -0.123 7.123 25 C -0.178 4.178 26 C -0.068 4.068 27 H 0.068 0.932 28 H 0.060 0.940 29 H 0.052 0.948 30 H 0.095 0.905 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.241 0.759 34 H 0.165 0.835 35 H 0.171 0.829 36 H 0.164 0.836 37 H 0.169 0.831 38 H 0.180 0.820 39 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -14.994 10.402 -15.237 23.774 hybrid contribution 0.881 -0.108 0.503 1.020 sum -14.112 10.294 -14.734 22.853 Atomic orbital electron populations 1.21702 0.96584 0.99579 1.00417 1.21804 0.94140 0.98678 1.01530 1.18575 0.93981 0.89564 0.80820 0.97195 1.21544 0.91346 1.39378 1.06855 0.91433 1.25720 1.03286 0.94196 0.94921 1.70020 1.37045 1.38068 1.09776 0.85385 0.79123 0.77583 0.78498 1.20296 1.20673 1.18826 1.46377 1.15135 1.53634 1.17996 1.21216 0.83119 0.80947 0.90363 1.90690 1.51630 1.59505 1.40924 1.21071 0.88789 0.77388 0.85865 1.90609 1.53479 1.49967 1.39489 1.22187 0.97482 1.05750 1.01713 1.22907 0.93273 0.85716 0.96112 1.19203 0.93943 1.02305 0.95670 1.21629 0.92123 0.95814 0.99036 1.21296 0.98517 1.00658 0.97780 1.18305 0.81045 0.96450 0.95961 1.91504 1.41566 1.82644 1.96543 1.21377 0.93963 1.03094 0.99347 1.21619 0.95645 0.92733 0.96811 0.93239 0.93986 0.94788 0.90477 0.94242 0.92410 0.75943 0.83530 0.82863 0.83600 0.83077 0.82023 0.81360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.48 8.51 71.98 0.61 -4.87 16 2 C -0.12 -5.99 5.45 30.60 0.17 -5.83 16 3 C 0.27 14.01 2.24 44.25 0.10 14.11 16 4 H 0.01 0.60 7.58 -2.39 -0.02 0.59 16 5 C -0.55 -29.53 8.73 25.60 0.22 -29.31 16 6 H 0.07 3.45 7.74 -2.91 -0.02 3.43 16 7 C 0.02 1.04 5.29 84.66 0.45 1.49 16 8 N -0.91 -51.36 11.29 21.45 0.24 -51.11 16 9 Si 0.97 42.12 29.54 68.60 2.03 44.14 16 10 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 11 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 12 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 13 N -0.68 -29.46 5.01 -447.73 -2.25 -31.71 16 14 C 0.46 18.38 6.42 87.17 0.56 18.94 16 15 O -0.55 -24.35 13.52 -3.35 -0.05 -24.40 16 16 C 0.39 12.27 6.96 25.91 0.18 12.45 16 17 O -0.46 -14.81 16.23 -4.11 -0.07 -14.88 16 18 C -0.25 -6.11 8.90 22.41 0.20 -5.92 16 19 C 0.04 0.69 9.43 23.92 0.23 0.91 16 20 C -0.11 -1.68 5.87 -20.14 -0.12 -1.80 16 21 C -0.07 -1.07 9.41 22.60 0.21 -0.86 16 22 C -0.16 -2.42 10.01 22.27 0.22 -2.20 16 23 C 0.10 1.52 7.31 22.52 0.16 1.68 16 24 F -0.14 -2.43 17.26 44.97 0.78 -1.66 16 25 C -0.16 -1.81 10.01 22.27 0.22 -1.58 16 26 C -0.05 -0.55 9.80 22.60 0.22 -0.33 16 27 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.04 1.76 5.64 -2.39 -0.01 1.75 16 29 H 0.03 1.57 7.85 -2.38 -0.02 1.55 16 30 H 0.08 4.18 5.95 -2.39 -0.01 4.17 16 31 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.27 14.21 8.31 -92.71 -0.77 13.44 16 33 H 0.41 16.16 8.00 -92.71 -0.74 15.41 16 34 H 0.15 3.47 5.71 -2.91 -0.02 3.45 16 35 H 0.15 2.34 7.45 -2.91 -0.02 2.32 16 36 H 0.15 2.22 6.17 -2.91 -0.02 2.20 16 37 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 38 H 0.16 1.08 8.06 -2.91 -0.02 1.05 16 39 H 0.17 0.86 8.06 -2.91 -0.02 0.83 16 Total: -1.00 -64.49 339.37 4.68 -59.80 By element: Atomic # 1 Polarization: 22.54 SS G_CDS: 0.36 Total: 22.90 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: 3.64 Total: -3.09 kcal Atomic # 7 Polarization: -80.82 SS G_CDS: -2.00 Total: -82.82 kcal Atomic # 8 Polarization: -39.16 SS G_CDS: -0.11 Total: -39.27 kcal Atomic # 9 Polarization: -2.43 SS G_CDS: 0.78 Total: -1.66 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.14 kcal Total: -64.49 4.68 -59.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153702194.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.652 kcal (2) G-P(sol) polarization free energy of solvation -64.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds