Wall clock time and date at job start Tue Mar 31 2020 08:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37441 * 123.38516 * 2 1 4 4 C 1.33865 * 115.12272 * 180.27653 * 3 2 1 5 5 S 1.70601 * 111.01892 * 359.75214 * 4 3 2 6 6 C 1.37039 * 123.39133 * 179.80790 * 2 1 3 7 7 C 1.41582 * 125.47627 * 0.02562 * 6 2 1 8 8 C 1.35650 * 120.00440 * 179.71970 * 7 6 2 9 9 C 1.41470 * 120.00530 * 179.97438 * 8 7 6 10 10 O 1.21789 * 119.99626 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00542 * 179.97438 * 9 8 7 12 12 C 1.46498 * 120.00425 * 179.97438 * 11 9 8 13 13 H 1.08995 * 109.35337 * 324.83266 * 12 11 9 14 14 C 1.52963 * 109.40821 * 84.64845 * 12 11 9 15 15 C 1.53236 * 109.40035 * 183.70635 * 14 12 11 16 16 C 1.51268 * 108.53762 * 305.37197 * 15 14 12 17 17 C 1.37876 * 120.85023 * 231.37199 * 16 15 14 18 18 N 1.31518 * 119.99948 * 0.02562 * 17 16 15 19 19 Si 1.86798 * 120.00069 * 179.97438 * 17 16 15 20 20 H 1.48503 * 109.46940 * 89.99622 * 19 17 16 21 21 H 1.48497 * 109.47390 * 209.99726 * 19 17 16 22 22 H 1.48499 * 109.46926 * 330.00155 * 19 17 16 23 23 C 1.51297 * 118.30526 * 51.34945 * 16 15 14 24 24 C 1.52953 * 109.41521 * 205.00004 * 12 11 9 25 25 H 1.09011 * 109.46730 * 270.19396 * 1 2 3 26 26 H 1.08992 * 109.47726 * 30.19479 * 1 2 3 27 27 H 1.09001 * 109.47350 * 150.20109 * 1 2 3 28 28 H 1.07994 * 122.44072 * 0.02562 * 3 2 1 29 29 H 1.08001 * 124.48576 * 179.72383 * 4 3 2 30 30 H 1.08004 * 119.99674 * 359.71927 * 7 6 2 31 31 H 1.08004 * 119.99375 * 359.97438 * 8 7 6 32 32 H 0.96997 * 119.99794 * 0.02562 * 11 9 8 33 33 H 1.08994 * 109.48627 * 303.68371 * 14 12 11 34 34 H 1.08995 * 109.48314 * 63.73014 * 14 12 11 35 35 H 1.08999 * 109.62901 * 65.09097 * 15 14 12 36 36 H 1.09005 * 109.62300 * 185.46412 * 15 14 12 37 37 H 0.96999 * 119.99632 * 180.02562 * 18 17 16 38 38 H 1.08998 * 109.64332 * 188.94879 * 23 16 15 39 39 H 1.08992 * 109.62506 * 68.36190 * 23 16 15 40 40 H 1.09002 * 109.48451 * 296.27886 * 24 12 11 41 41 H 1.08999 * 109.48225 * 56.30776 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2633 1.1476 0.0000 4 6 3.5880 0.9552 -0.0058 5 16 3.9647 -0.7086 -0.0049 6 6 2.2612 -1.1442 0.0038 7 6 1.7507 -2.4648 0.0077 8 6 2.6019 -3.5210 0.0056 9 6 2.0919 -4.8406 0.0101 10 8 0.8885 -5.0282 0.0154 11 7 2.9375 -5.8900 0.0074 12 6 2.4094 -7.2565 0.0126 13 1 1.4982 -7.2892 0.6098 14 6 2.0930 -7.6846 -1.4214 15 6 1.4548 -9.0776 -1.4077 16 6 2.3746 -10.0207 -0.6642 17 6 2.7596 -11.2205 -1.2238 18 7 2.3269 -11.5574 -2.4192 19 14 3.8969 -12.3669 -0.2849 20 1 3.0883 -13.2971 0.5435 21 1 4.7179 -13.1462 -1.2459 22 1 4.7884 -11.5686 0.5944 23 6 2.8617 -9.6135 0.7091 24 6 3.4487 -8.2010 0.6184 25 1 -0.3633 0.0035 1.0278 26 1 -0.3634 0.8881 -0.5168 27 1 -0.3634 -0.8918 -0.5107 28 1 1.8210 2.1328 0.0004 29 1 4.3211 1.7484 -0.0110 30 1 0.6836 -2.6312 0.0124 31 1 3.6690 -3.3545 0.0005 32 1 3.8959 -5.7405 0.0028 33 1 1.4005 -6.9719 -1.8692 34 1 3.0137 -7.7123 -2.0041 35 1 0.4898 -9.0333 -0.9027 36 1 1.3167 -9.4271 -2.4309 37 1 2.5974 -12.4017 -2.8128 38 1 3.6308 -10.3086 1.0460 39 1 2.0271 -9.6188 1.4100 40 1 4.3375 -8.2164 -0.0126 41 1 3.7173 -7.8542 1.6162 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177075251.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:21:54 Heat of formation + Delta-G solvation = -10.559672 kcal Electronic energy + Delta-G solvation = -21702.519483 eV Core-core repulsion = 18480.287778 eV Total energy + Delta-G solvation = -3222.231705 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 305.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.70565 -38.73607 -36.81724 -34.09915 -33.63362 -31.61020 -30.82558 -29.60391 -28.22906 -26.85070 -24.19023 -22.81092 -21.69098 -21.29064 -19.82311 -19.39412 -18.95734 -17.32804 -16.87534 -16.01172 -15.53529 -15.46602 -14.58501 -14.42777 -14.23969 -14.06191 -13.51225 -13.31482 -13.10334 -12.82402 -12.67583 -12.54825 -12.23585 -12.12632 -12.04204 -11.94727 -11.54755 -11.01875 -10.98564 -10.80760 -10.73732 -10.58101 -10.25463 -9.90408 -9.63039 -9.47005 -9.03032 -8.77953 -8.72248 -8.45959 -8.34316 -8.09109 -6.07419 -3.98735 -0.02472 1.28201 1.63905 1.69174 2.51821 3.27674 3.35215 3.36105 3.67334 3.73993 4.38899 4.57006 4.70734 4.85339 4.98032 5.06538 5.18659 5.21908 5.35285 5.47664 5.60815 5.62568 5.72449 5.89264 5.92356 6.07675 6.19462 6.24636 6.27648 6.51476 6.57331 6.75188 6.81402 6.87713 7.05370 7.13790 7.29637 7.42068 7.67051 7.79602 7.88621 7.98685 8.42325 8.63587 8.99657 9.56207 11.02108 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.034220 B = 0.002561 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.039188 B =10932.528135 C =11328.288294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.071 4.071 3 C -0.140 4.140 4 C -0.246 4.246 5 S 0.191 5.809 6 C -0.195 4.195 7 C 0.010 3.990 8 C -0.212 4.212 9 C 0.543 3.457 10 O -0.551 6.551 11 N -0.720 5.720 12 C 0.153 3.847 13 H 0.078 0.922 14 C -0.113 4.113 15 C 0.012 3.988 16 C -0.487 4.487 17 C 0.075 3.925 18 N -0.890 5.890 19 Si 0.887 3.113 20 H -0.278 1.278 21 H -0.290 1.290 22 H -0.265 1.265 23 C -0.018 4.018 24 C -0.112 4.112 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.140 0.860 29 H 0.165 0.835 30 H 0.147 0.853 31 H 0.120 0.880 32 H 0.393 0.607 33 H 0.034 0.966 34 H 0.048 0.952 35 H 0.005 0.995 36 H 0.057 0.943 37 H 0.264 0.736 38 H 0.038 0.962 39 H 0.019 0.981 40 H 0.055 0.945 41 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.745 24.359 5.206 25.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.084 4.084 3 C -0.171 4.171 4 C -0.383 4.383 5 S 0.461 5.539 6 C -0.313 4.313 7 C -0.012 4.012 8 C -0.236 4.236 9 C 0.333 3.667 10 O -0.432 6.432 11 N -0.368 5.368 12 C 0.050 3.950 13 H 0.096 0.904 14 C -0.152 4.152 15 C -0.026 4.026 16 C -0.507 4.507 17 C -0.128 4.128 18 N -0.527 5.527 19 Si 0.715 3.285 20 H -0.204 1.204 21 H -0.217 1.217 22 H -0.190 1.190 23 C -0.056 4.056 24 C -0.151 4.151 25 H 0.094 0.906 26 H 0.089 0.911 27 H 0.092 0.908 28 H 0.157 0.843 29 H 0.182 0.818 30 H 0.164 0.836 31 H 0.137 0.863 32 H 0.226 0.774 33 H 0.053 0.947 34 H 0.067 0.933 35 H 0.024 0.976 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.056 0.944 39 H 0.038 0.962 40 H 0.074 0.926 41 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 4.318 23.269 5.056 24.200 hybrid contribution 0.047 0.453 0.354 0.577 sum 4.365 23.722 5.410 24.719 Atomic orbital electron populations 1.20572 0.89156 1.03336 1.02809 1.19665 0.97390 0.91173 1.00209 1.19861 0.92610 0.99555 1.05081 1.25213 1.00630 1.02113 1.10385 1.83132 1.04947 0.97658 1.68168 1.22487 0.96658 0.97031 1.15088 1.20680 1.00920 0.88397 0.91201 1.22109 0.99883 0.93545 1.08020 1.16885 0.86844 0.85374 0.77616 1.90830 1.14871 1.86802 1.50656 1.46346 1.09388 1.07256 1.73833 1.21050 0.97390 0.77950 0.98566 0.90377 1.21952 0.99869 0.99382 0.94008 1.19347 0.94183 0.89846 0.99228 1.20066 1.28196 1.02624 0.99765 1.24861 0.95989 0.97214 0.94688 1.69847 1.44788 1.22895 1.15218 0.86684 0.81400 0.80712 0.79671 1.20418 1.21689 1.18985 1.19788 0.96330 0.91999 0.97495 1.21843 0.97786 0.97814 0.97647 0.90606 0.91095 0.90778 0.84269 0.81788 0.83590 0.86255 0.77370 0.94678 0.93308 0.97620 0.92401 0.92623 0.94403 0.96224 0.92589 0.94456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.75 9.88 36.00 0.36 -0.40 16 2 C -0.07 -0.66 5.92 -105.35 -0.62 -1.29 16 3 C -0.14 -1.13 9.97 -41.41 -0.41 -1.54 16 4 C -0.25 -1.88 10.92 29.20 0.32 -1.56 16 5 S 0.19 1.65 21.77 -107.50 -2.34 -0.69 16 6 C -0.20 -2.05 6.21 -38.74 -0.24 -2.30 16 7 C 0.01 0.12 8.94 -39.23 -0.35 -0.23 16 8 C -0.21 -2.75 9.30 -39.28 -0.37 -3.12 16 9 C 0.54 9.17 7.51 -15.03 -0.11 9.06 16 10 O -0.55 -11.40 15.77 5.11 0.08 -11.32 16 11 N -0.72 -11.83 5.06 -56.79 -0.29 -12.12 16 12 C 0.15 3.08 2.35 -67.97 -0.16 2.92 16 13 H 0.08 1.73 7.58 -51.93 -0.39 1.34 16 14 C -0.11 -2.55 5.50 -26.63 -0.15 -2.70 16 15 C 0.01 0.31 5.96 -27.48 -0.16 0.14 16 16 C -0.49 -12.91 5.51 -98.91 -0.55 -13.46 16 17 C 0.07 2.05 5.46 -17.82 -0.10 1.96 16 18 N -0.89 -25.81 12.74 55.43 0.71 -25.11 16 19 Si 0.89 20.90 27.53 -169.99 -4.68 16.22 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.26 -5.94 6.10 56.52 0.34 -5.60 16 23 C -0.02 -0.42 5.59 -27.47 -0.15 -0.57 16 24 C -0.11 -2.22 5.40 -26.63 -0.14 -2.36 16 25 H 0.08 0.52 8.14 -51.92 -0.42 0.09 16 26 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.59 7.07 -51.93 -0.37 0.23 16 28 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 29 H 0.16 0.87 8.06 -52.49 -0.42 0.44 16 30 H 0.15 1.85 6.47 -52.48 -0.34 1.51 16 31 H 0.12 1.25 7.04 -52.48 -0.37 0.89 16 32 H 0.39 5.21 8.56 -40.82 -0.35 4.86 16 33 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 36 H 0.06 1.63 7.08 -51.93 -0.37 1.26 16 37 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 38 H 0.04 0.86 4.60 -51.93 -0.24 0.62 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 345.57 15.07 5.21 5.21 Total: -1.00 -31.22 345.57 -10.00 -41.22 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -5.84 Total: 2.03 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: -2.84 Total: -15.44 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: 0.42 Total: -37.23 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.08 Total: -11.32 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.68 Total: 16.22 kcal Atomic # 16 Polarization: 1.65 SS G_CDS: -2.34 Total: -0.69 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.22 -10.00 -41.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177075251.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.662 kcal (2) G-P(sol) polarization free energy of solvation -31.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds