Wall clock time and date at job start Tue Mar 31 2020 08:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39432 * 120.23012 * 285.48276 * 3 2 1 5 5 C 1.37961 * 120.00233 * 180.02562 * 4 3 2 6 6 C 1.38581 * 120.47531 * 0.02562 * 5 4 3 7 7 C 1.37897 * 120.46087 * 359.97438 * 6 5 4 8 8 C 1.39583 * 119.98132 * 359.69887 * 7 6 5 9 9 C 1.47438 * 120.23197 * 180.27823 * 8 7 6 10 10 O 1.21628 * 119.99599 * 136.09592 * 9 8 7 11 11 N 1.34776 * 119.99807 * 316.09594 * 9 8 7 12 12 C 1.36831 * 120.00157 * 5.04955 * 11 9 8 13 13 H 1.07992 * 120.00024 * 318.78663 * 12 11 9 14 14 C 1.39064 * 119.99884 * 138.78893 * 12 11 9 15 15 N 1.31359 * 120.00420 * 342.24785 * 14 12 11 16 16 Si 1.86799 * 119.99777 * 162.24651 * 14 12 11 17 17 H 1.48496 * 109.47139 * 59.99998 * 16 14 12 18 18 H 1.48501 * 109.47172 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47484 * 299.99612 * 16 14 12 20 20 C 1.46506 * 119.99642 * 185.04108 * 11 9 8 21 21 C 1.50702 * 109.46442 * 84.50600 * 20 11 9 22 22 C 1.38234 * 120.00097 * 268.40110 * 21 20 11 23 23 C 1.38233 * 120.00001 * 179.77060 * 22 21 20 24 24 C 1.38239 * 120.00197 * 0.48368 * 23 22 21 25 25 C 1.38233 * 119.99319 * 359.79414 * 24 23 22 26 26 C 1.38228 * 120.00684 * 359.95144 * 25 24 23 27 27 H 4.52144 * 13.99411 * 359.97438 * 4 2 1 28 28 H 1.07999 * 119.99720 * 0.02562 * 4 3 2 29 29 H 1.07999 * 119.75997 * 179.97438 * 5 4 3 30 30 H 1.07997 * 119.77032 * 179.97438 * 6 5 4 31 31 H 1.07999 * 120.00396 * 179.97438 * 7 6 5 32 32 H 0.97000 * 120.00007 * 180.02562 * 15 14 12 33 33 H 1.09000 * 109.46991 * 204.50147 * 20 11 9 34 34 H 1.08992 * 109.47452 * 324.50949 * 20 11 9 35 35 H 1.08005 * 119.99641 * 0.02562 * 22 21 20 36 36 H 1.08000 * 120.00122 * 180.25443 * 23 22 21 37 37 H 1.07994 * 120.00278 * 179.76773 * 24 23 22 38 38 H 1.08001 * 119.99369 * 179.97438 * 25 24 23 39 39 H 1.07995 * 120.00442 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3082 -0.3206 1.1610 5 6 4.6878 -0.3180 1.1558 6 6 5.3857 0.0029 0.0024 7 6 4.7109 0.3236 -1.1566 8 6 3.3152 0.3204 -1.1748 9 6 2.5881 0.6565 -2.4126 10 8 1.6322 -0.0121 -2.7569 11 7 2.9828 1.7045 -3.1624 12 6 4.1181 2.3931 -2.8322 13 1 4.3326 2.6163 -1.7976 14 6 4.9958 2.8055 -3.8289 15 7 4.9403 2.2572 -5.0212 16 14 6.2539 4.1395 -3.4721 17 1 7.1451 3.6973 -2.3697 18 1 7.0637 4.3949 -4.6904 19 1 5.5534 5.3865 -3.0725 20 6 2.1962 2.1063 -4.3313 21 6 1.0744 3.0128 -3.8941 22 6 -0.1603 2.4799 -3.5746 23 6 -1.1879 3.3109 -3.1691 24 6 -0.9836 4.6760 -3.0927 25 6 0.2495 5.2094 -3.4178 26 6 1.2785 4.3780 -3.8183 27 1 -1.0500 0.0004 0.0004 28 1 2.7720 -0.5715 2.0643 29 1 5.2277 -0.5671 2.0574 30 1 6.4657 0.0018 0.0113 31 1 5.2622 0.5730 -2.0511 32 1 5.5528 2.5446 -5.7163 33 1 2.8373 2.6356 -5.0362 34 1 1.7811 1.2205 -4.8119 35 1 -0.3210 1.4137 -3.6378 36 1 -2.1514 2.8941 -2.9154 37 1 -1.7875 5.3256 -2.7795 38 1 0.4089 6.2760 -3.3586 39 1 2.2420 4.7947 -4.0719 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191107224.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:26:51 Heat of formation + Delta-G solvation = 79.471922 kcal Electronic energy + Delta-G solvation = -24384.222001 eV Core-core repulsion = 21030.450408 eV Total energy + Delta-G solvation = -3353.771593 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.116 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.55298 -38.57364 -37.31153 -34.96398 -33.15255 -31.99807 -31.31961 -30.28801 -30.00447 -29.61080 -25.92932 -24.92693 -22.90870 -22.43237 -21.92218 -20.75573 -19.38720 -18.46046 -17.37631 -16.42782 -15.73564 -15.44379 -15.14017 -14.78460 -14.53309 -14.41839 -14.15010 -13.90299 -13.46610 -13.09141 -12.83180 -12.77056 -12.59737 -12.06975 -11.95739 -11.66389 -11.37523 -11.26294 -11.00493 -10.91926 -10.75124 -10.63917 -10.50690 -10.36175 -10.19531 -9.95530 -9.21084 -8.64227 -8.33454 -8.31583 -8.10119 -8.02437 -7.57139 -6.49411 -4.18959 1.34335 1.76329 1.92914 1.99856 3.06075 3.14632 3.16921 3.33578 3.53995 3.87747 4.00486 4.31024 4.56876 4.76180 4.81677 4.93302 5.33779 5.41953 5.46779 5.48520 5.57466 5.64096 5.85247 5.98821 6.05235 6.09955 6.12707 6.18021 6.39688 6.51971 6.55127 6.60494 6.73580 6.83297 6.97774 7.02879 7.04108 7.07152 7.12521 7.32491 7.41288 7.43912 7.61772 7.84305 8.11371 8.26996 8.94831 9.37923 9.82311 10.53177 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.009722 B = 0.007979 C = 0.005070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2879.242230 B = 3508.520155 C = 5521.624037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.125 4.125 3 C 0.036 3.964 4 C -0.117 4.117 5 C -0.117 4.117 6 C -0.131 4.131 7 C -0.062 4.062 8 C -0.066 4.066 9 C 0.514 3.486 10 O -0.584 6.584 11 N -0.423 5.423 12 C -0.339 4.339 13 H 0.089 0.911 14 C 0.047 3.953 15 N -0.856 5.856 16 Si 0.908 3.092 17 H -0.269 1.269 18 H -0.282 1.282 19 H -0.271 1.271 20 C 0.153 3.847 21 C -0.082 4.082 22 C -0.100 4.100 23 C -0.132 4.132 24 C -0.134 4.134 25 C -0.133 4.133 26 C -0.098 4.098 27 H 0.217 0.783 28 H 0.121 0.879 29 H 0.120 0.880 30 H 0.122 0.878 31 H 0.153 0.847 32 H 0.273 0.727 33 H 0.109 0.891 34 H 0.065 0.935 35 H 0.124 0.876 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.857 1.429 6.212 6.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.125 4.125 3 C 0.035 3.965 4 C -0.135 4.135 5 C -0.135 4.135 6 C -0.149 4.149 7 C -0.080 4.080 8 C -0.069 4.069 9 C 0.303 3.697 10 O -0.469 6.469 11 N -0.140 5.140 12 C -0.467 4.467 13 H 0.107 0.893 14 C -0.160 4.160 15 N -0.491 5.491 16 Si 0.734 3.266 17 H -0.194 1.194 18 H -0.208 1.208 19 H -0.196 1.196 20 C 0.030 3.970 21 C -0.083 4.083 22 C -0.119 4.119 23 C -0.150 4.150 24 C -0.152 4.152 25 C -0.151 4.151 26 C -0.116 4.116 27 H 0.234 0.766 28 H 0.139 0.861 29 H 0.138 0.862 30 H 0.140 0.860 31 H 0.171 0.829 32 H 0.083 0.917 33 H 0.127 0.873 34 H 0.083 0.917 35 H 0.142 0.858 36 H 0.130 0.870 37 H 0.129 0.871 38 H 0.131 0.869 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.197 1.125 5.786 6.705 hybrid contribution 0.563 0.859 0.203 1.047 sum -2.634 1.984 5.988 6.836 Atomic orbital electron populations 1.24524 0.95471 0.99722 1.00636 1.19808 0.91885 1.00836 1.00007 1.15984 0.86729 1.00578 0.93237 1.20945 0.94150 1.01659 0.96712 1.21028 0.93698 1.00572 0.98239 1.21205 0.99898 1.00671 0.93166 1.21770 0.93122 0.93886 0.99270 1.20149 0.93965 0.99359 0.93466 1.18177 0.85219 0.81167 0.85110 1.90632 1.30949 1.52077 1.73235 1.43164 1.21518 1.24874 1.24454 1.19377 0.97969 1.34834 0.94476 0.89306 1.25390 0.97425 0.97675 0.95506 1.69891 1.37044 1.38350 1.03837 0.86283 0.80422 0.81669 0.78199 1.19403 1.20775 1.19627 1.20331 0.90117 0.96690 0.89854 1.20637 0.95271 0.94532 0.97883 1.21269 0.92756 1.00048 0.97777 1.21040 0.98825 0.93710 1.01412 1.20967 0.97113 0.95175 1.01937 1.21037 0.93678 0.99166 1.01184 1.21110 0.98489 0.93324 0.98706 0.76636 0.86116 0.86199 0.85994 0.82934 0.91697 0.87312 0.91670 0.85760 0.87006 0.87135 0.86941 0.86178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.33 19.25 29.55 0.57 -2.76 16 2 C -0.13 -2.55 11.45 -38.84 -0.44 -2.99 16 3 C 0.04 0.73 5.76 -106.52 -0.61 0.11 16 4 C -0.12 -1.92 9.74 -39.24 -0.38 -2.30 16 5 C -0.12 -1.73 10.02 -39.56 -0.40 -2.12 16 6 C -0.13 -2.12 10.02 -39.58 -0.40 -2.51 16 7 C -0.06 -1.23 7.85 -39.20 -0.31 -1.54 16 8 C -0.07 -1.47 5.25 -104.64 -0.55 -2.02 16 9 C 0.51 12.76 6.81 -12.51 -0.09 12.68 16 10 O -0.58 -15.41 14.69 5.25 0.08 -15.33 16 11 N -0.42 -10.37 2.49 -117.32 -0.29 -10.66 16 12 C -0.34 -8.13 6.47 -15.01 -0.10 -8.23 16 13 H 0.09 2.14 6.67 -52.49 -0.35 1.79 16 14 C 0.05 1.11 4.96 -17.45 -0.09 1.02 16 15 N -0.86 -21.15 11.59 55.50 0.64 -20.51 16 16 Si 0.91 18.42 29.59 -169.99 -5.03 13.39 16 17 H -0.27 -5.36 7.11 56.52 0.40 -4.95 16 18 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 19 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 20 C 0.15 3.58 5.04 -5.19 -0.03 3.56 16 21 C -0.08 -1.73 5.42 -104.62 -0.57 -2.30 16 22 C -0.10 -1.99 9.54 -39.58 -0.38 -2.37 16 23 C -0.13 -2.25 10.05 -39.58 -0.40 -2.64 16 24 C -0.13 -2.13 10.05 -39.58 -0.40 -2.53 16 25 C -0.13 -2.24 10.05 -39.59 -0.40 -2.64 16 26 C -0.10 -1.91 9.71 -39.58 -0.38 -2.29 16 27 H 0.22 2.88 7.80 -54.09 -0.42 2.46 16 28 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 29 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 30 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 31 H 0.15 3.24 6.46 -52.49 -0.34 2.90 16 32 H 0.27 6.41 8.31 -40.82 -0.34 6.07 16 33 H 0.11 2.64 5.70 -51.93 -0.30 2.34 16 34 H 0.06 1.58 7.46 -51.93 -0.39 1.20 16 35 H 0.12 2.59 7.46 -52.48 -0.39 2.20 16 36 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 37 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 38 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 39 H 0.12 2.35 8.06 -52.49 -0.42 1.93 16 LS Contribution 343.36 15.07 5.17 5.17 Total: -1.00 -28.58 343.36 -9.05 -37.63 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -4.28 Total: 12.18 kcal Atomic # 6 Polarization: -16.54 SS G_CDS: -5.34 Total: -21.88 kcal Atomic # 7 Polarization: -31.52 SS G_CDS: 0.35 Total: -31.17 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: 0.08 Total: -15.33 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -5.03 Total: 13.39 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -28.58 -9.05 -37.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191107224.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.100 kcal (2) G-P(sol) polarization free energy of solvation -28.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds