Wall clock time and date at job start Tue Mar 31 2020 08:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39432 * 120.23012 * 285.48276 * 3 2 1 5 5 C 1.37961 * 120.00233 * 180.02562 * 4 3 2 6 6 C 1.38581 * 120.47531 * 0.02562 * 5 4 3 7 7 C 1.37897 * 120.46087 * 359.97438 * 6 5 4 8 8 C 1.39583 * 119.98132 * 359.69887 * 7 6 5 9 9 C 1.47438 * 120.23197 * 180.27823 * 8 7 6 10 10 O 1.21628 * 119.99599 * 136.09592 * 9 8 7 11 11 N 1.34776 * 119.99807 * 316.09594 * 9 8 7 12 12 C 1.36831 * 120.00157 * 5.04955 * 11 9 8 13 13 H 1.07992 * 120.00024 * 318.78663 * 12 11 9 14 14 C 1.39064 * 119.99884 * 138.78893 * 12 11 9 15 15 N 1.31359 * 120.00420 * 342.24785 * 14 12 11 16 16 Si 1.86799 * 119.99777 * 162.24651 * 14 12 11 17 17 H 1.48496 * 109.47139 * 59.99998 * 16 14 12 18 18 H 1.48501 * 109.47172 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47484 * 299.99612 * 16 14 12 20 20 C 1.46506 * 119.99642 * 185.04108 * 11 9 8 21 21 C 1.50702 * 109.46442 * 84.50600 * 20 11 9 22 22 C 1.38234 * 120.00097 * 268.40110 * 21 20 11 23 23 C 1.38233 * 120.00001 * 179.77060 * 22 21 20 24 24 C 1.38239 * 120.00197 * 0.48368 * 23 22 21 25 25 C 1.38233 * 119.99319 * 359.79414 * 24 23 22 26 26 C 1.38228 * 120.00684 * 359.95144 * 25 24 23 27 27 H 4.52144 * 13.99411 * 359.97438 * 4 2 1 28 28 H 1.07999 * 119.99720 * 0.02562 * 4 3 2 29 29 H 1.07999 * 119.75997 * 179.97438 * 5 4 3 30 30 H 1.07997 * 119.77032 * 179.97438 * 6 5 4 31 31 H 1.07999 * 120.00396 * 179.97438 * 7 6 5 32 32 H 0.97000 * 120.00007 * 180.02562 * 15 14 12 33 33 H 1.09000 * 109.46991 * 204.50147 * 20 11 9 34 34 H 1.08992 * 109.47452 * 324.50949 * 20 11 9 35 35 H 1.08005 * 119.99641 * 0.02562 * 22 21 20 36 36 H 1.08000 * 120.00122 * 180.25443 * 23 22 21 37 37 H 1.07994 * 120.00278 * 179.76773 * 24 23 22 38 38 H 1.08001 * 119.99369 * 179.97438 * 25 24 23 39 39 H 1.07995 * 120.00442 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3082 -0.3206 1.1610 5 6 4.6878 -0.3180 1.1558 6 6 5.3857 0.0029 0.0024 7 6 4.7109 0.3236 -1.1566 8 6 3.3152 0.3204 -1.1748 9 6 2.5881 0.6565 -2.4126 10 8 1.6322 -0.0121 -2.7569 11 7 2.9828 1.7045 -3.1624 12 6 4.1181 2.3931 -2.8322 13 1 4.3326 2.6163 -1.7976 14 6 4.9958 2.8055 -3.8289 15 7 4.9403 2.2572 -5.0212 16 14 6.2539 4.1395 -3.4721 17 1 7.1451 3.6973 -2.3697 18 1 7.0637 4.3949 -4.6904 19 1 5.5534 5.3865 -3.0725 20 6 2.1962 2.1063 -4.3313 21 6 1.0744 3.0128 -3.8941 22 6 -0.1603 2.4799 -3.5746 23 6 -1.1879 3.3109 -3.1691 24 6 -0.9836 4.6760 -3.0927 25 6 0.2495 5.2094 -3.4178 26 6 1.2785 4.3780 -3.8183 27 1 -1.0500 0.0004 0.0004 28 1 2.7720 -0.5715 2.0643 29 1 5.2277 -0.5671 2.0574 30 1 6.4657 0.0018 0.0113 31 1 5.2622 0.5730 -2.0511 32 1 5.5528 2.5446 -5.7163 33 1 2.8373 2.6356 -5.0362 34 1 1.7811 1.2205 -4.8119 35 1 -0.3210 1.4137 -3.6378 36 1 -2.1514 2.8941 -2.9154 37 1 -1.7875 5.3256 -2.7795 38 1 0.4089 6.2760 -3.3586 39 1 2.2420 4.7947 -4.0719 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191107224.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:26:50 Heat of formation + Delta-G solvation = 66.515744 kcal Electronic energy + Delta-G solvation = -24384.783823 eV Core-core repulsion = 21030.450408 eV Total energy + Delta-G solvation = -3354.333415 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.116 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.20412 -40.01525 -38.89566 -36.80828 -34.57265 -33.76077 -32.91900 -31.72438 -31.47789 -31.01085 -27.64813 -26.71644 -24.38528 -23.84074 -23.36884 -22.26208 -21.13784 -19.99101 -18.91772 -18.03727 -17.34048 -16.87799 -16.80247 -16.38632 -16.08130 -15.92592 -15.71823 -15.43597 -15.01564 -14.55370 -14.39167 -14.23615 -14.05280 -13.62582 -13.56636 -13.24941 -13.11778 -12.76624 -12.63688 -12.55980 -12.21002 -12.13558 -12.04494 -11.88715 -11.77389 -11.43417 -11.02202 -10.43161 -9.77217 -9.75535 -9.60932 -9.51077 -9.36936 -8.32661 -6.08668 -0.08013 0.37579 0.47562 0.55212 1.42611 1.47182 1.55190 1.88391 2.06625 2.19002 2.29606 2.76098 2.98518 3.14978 3.25729 3.46392 4.00693 4.08850 4.12517 4.17976 4.22438 4.27433 4.34140 4.48982 4.59167 4.67817 4.70270 4.71479 4.83790 5.10220 5.12049 5.19284 5.21910 5.24105 5.43432 5.49337 5.59537 5.61909 5.62580 5.65658 5.86569 5.99547 6.06235 6.18743 6.39331 6.69170 7.08209 7.51574 7.96940 8.71204 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.009722 B = 0.007979 C = 0.005070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2879.242230 B = 3508.520155 C = 5521.624037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.180 4.180 3 C 0.014 3.986 4 C -0.112 4.112 5 C -0.095 4.095 6 C -0.123 4.123 7 C -0.078 4.078 8 C -0.107 4.107 9 C 0.500 3.500 10 O -0.617 6.617 11 N -0.431 5.431 12 C -0.343 4.343 13 H 0.086 0.914 14 C 0.013 3.987 15 N -0.890 5.890 16 Si 0.971 3.029 17 H -0.257 1.257 18 H -0.282 1.282 19 H -0.269 1.269 20 C 0.161 3.839 21 C -0.106 4.106 22 C -0.119 4.119 23 C -0.127 4.127 24 C -0.121 4.121 25 C -0.126 4.126 26 C -0.115 4.115 27 H 0.255 0.745 28 H 0.151 0.849 29 H 0.171 0.829 30 H 0.156 0.844 31 H 0.127 0.873 32 H 0.274 0.726 33 H 0.093 0.907 34 H 0.036 0.964 35 H 0.101 0.899 36 H 0.143 0.857 37 H 0.156 0.844 38 H 0.147 0.853 39 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.062 3.061 9.348 10.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.180 4.180 3 C 0.013 3.987 4 C -0.130 4.130 5 C -0.113 4.113 6 C -0.141 4.141 7 C -0.097 4.097 8 C -0.110 4.110 9 C 0.291 3.709 10 O -0.504 6.504 11 N -0.147 5.147 12 C -0.471 4.471 13 H 0.104 0.896 14 C -0.191 4.191 15 N -0.526 5.526 16 Si 0.794 3.206 17 H -0.181 1.181 18 H -0.207 1.207 19 H -0.194 1.194 20 C 0.038 3.962 21 C -0.107 4.107 22 C -0.138 4.138 23 C -0.145 4.145 24 C -0.139 4.139 25 C -0.144 4.144 26 C -0.133 4.133 27 H 0.271 0.729 28 H 0.169 0.831 29 H 0.189 0.811 30 H 0.174 0.826 31 H 0.145 0.855 32 H 0.084 0.916 33 H 0.111 0.889 34 H 0.054 0.946 35 H 0.119 0.881 36 H 0.161 0.839 37 H 0.173 0.827 38 H 0.165 0.835 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -3.395 2.761 8.930 9.945 hybrid contribution 0.545 0.296 -0.727 0.956 sum -2.850 3.057 8.203 9.206 Atomic orbital electron populations 1.25509 0.96448 0.97850 0.98712 1.20441 0.92975 1.02647 1.01893 1.16336 0.87238 1.01240 0.93910 1.21368 0.95139 1.00160 0.96288 1.21574 0.93087 0.97416 0.99224 1.21564 1.01565 0.98926 0.92030 1.21610 0.92280 0.95672 1.00128 1.20093 0.94955 1.02788 0.93182 1.18803 0.85177 0.80757 0.86183 1.90564 1.32462 1.53075 1.74348 1.43373 1.21907 1.24982 1.24445 1.19450 0.98230 1.34866 0.94546 0.89618 1.26113 0.98887 0.99072 0.94991 1.70000 1.38115 1.39710 1.04783 0.85318 0.78187 0.78872 0.78208 1.18133 1.20708 1.19366 1.20119 0.90708 0.95790 0.89611 1.20455 0.95035 0.95069 1.00170 1.21173 0.93514 0.99497 0.99575 1.21381 0.99006 0.94201 0.99863 1.21457 0.97733 0.95021 0.99698 1.21416 0.93082 1.00507 0.99370 1.21122 0.99320 0.92850 1.00050 0.72920 0.83098 0.81118 0.82621 0.85506 0.91626 0.88866 0.94559 0.88080 0.83904 0.82663 0.83550 0.87201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.97 19.25 74.32 1.43 -4.53 16 2 C -0.18 -7.42 11.45 30.01 0.34 -7.08 16 3 C 0.01 0.57 5.76 -21.10 -0.12 0.45 16 4 C -0.11 -3.42 9.74 22.49 0.22 -3.21 16 5 C -0.10 -2.45 10.02 22.29 0.22 -2.22 16 6 C -0.12 -3.71 10.02 22.27 0.22 -3.49 16 7 C -0.08 -3.19 7.85 22.51 0.18 -3.02 16 8 C -0.11 -4.99 5.25 -19.88 -0.10 -5.09 16 9 C 0.50 26.75 6.81 86.67 0.59 27.34 16 10 O -0.62 -35.29 14.69 -4.12 -0.06 -35.35 16 11 N -0.43 -22.75 2.49 -643.33 -1.60 -24.35 16 12 C -0.34 -17.41 6.47 84.11 0.54 -16.86 16 13 H 0.09 4.32 6.67 -2.91 -0.02 4.30 16 14 C 0.01 0.65 4.96 84.96 0.42 1.07 16 15 N -0.89 -46.53 11.59 21.68 0.25 -46.28 16 16 Si 0.97 38.36 29.59 68.60 2.03 40.39 16 17 H -0.26 -9.60 7.11 99.48 0.71 -8.90 16 18 H -0.28 -11.02 7.11 99.48 0.71 -10.32 16 19 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 20 C 0.16 8.25 5.04 85.63 0.43 8.68 16 21 C -0.11 -4.76 5.42 -19.86 -0.11 -4.87 16 22 C -0.12 -4.93 9.54 22.27 0.21 -4.72 16 23 C -0.13 -4.11 10.05 22.27 0.22 -3.89 16 24 C -0.12 -3.45 10.05 22.27 0.22 -3.23 16 25 C -0.13 -3.97 10.05 22.27 0.22 -3.74 16 26 C -0.11 -4.57 9.71 22.27 0.22 -4.36 16 27 H 0.25 6.29 7.80 -4.42 -0.03 6.25 16 28 H 0.15 3.64 8.06 -2.91 -0.02 3.62 16 29 H 0.17 2.73 8.06 -2.91 -0.02 2.71 16 30 H 0.16 3.59 8.06 -2.91 -0.02 3.56 16 31 H 0.13 5.72 6.46 -2.91 -0.02 5.71 16 32 H 0.27 13.51 8.31 -92.71 -0.77 12.74 16 33 H 0.09 4.96 5.70 -2.39 -0.01 4.95 16 34 H 0.04 1.98 7.46 -2.39 -0.02 1.96 16 35 H 0.10 4.58 7.46 -2.91 -0.02 4.56 16 36 H 0.14 3.69 8.06 -2.91 -0.02 3.66 16 37 H 0.16 3.11 8.06 -2.91 -0.02 3.09 16 38 H 0.15 3.60 8.06 -2.91 -0.02 3.57 16 39 H 0.11 4.49 8.06 -2.91 -0.02 4.47 16 Total: -1.00 -69.23 343.36 7.05 -62.18 By element: Atomic # 1 Polarization: 35.12 SS G_CDS: 1.06 Total: 36.19 kcal Atomic # 6 Polarization: -38.14 SS G_CDS: 5.37 Total: -32.77 kcal Atomic # 7 Polarization: -69.28 SS G_CDS: -1.35 Total: -70.63 kcal Atomic # 8 Polarization: -35.29 SS G_CDS: -0.06 Total: -35.35 kcal Atomic # 14 Polarization: 38.36 SS G_CDS: 2.03 Total: 40.39 kcal Total: -69.23 7.05 -62.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191107224.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.692 kcal (2) G-P(sol) polarization free energy of solvation -69.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds