Wall clock time and date at job start Tue Mar 31 2020 08:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31242 * 119.79777 * 2 1 4 4 C 1.33067 * 121.72350 * 179.97438 * 3 2 1 5 5 C 1.47822 * 119.45946 * 179.97438 * 4 3 2 6 6 C 1.40677 * 119.74630 * 180.02562 * 5 4 3 7 7 C 1.35669 * 120.82453 * 179.97438 * 6 5 4 8 8 C 1.40821 * 120.03058 * 0.04697 * 7 6 5 9 9 C 1.40322 * 120.94586 * 179.97438 * 8 7 6 10 10 C 1.37705 * 119.58820 * 180.22695 * 9 8 7 11 11 O 1.35833 * 119.63841 * 179.74816 * 10 9 8 12 12 C 1.39876 * 120.72864 * 359.45102 * 10 9 8 13 13 C 1.35947 * 120.89438 * 0.57755 * 12 10 9 14 14 C 1.40732 * 119.87994 * 359.70404 * 13 12 10 15 15 C 1.38630 * 119.74462 * 0.02562 * 5 4 3 16 16 C 1.39983 * 121.08621 * 0.25616 * 4 3 2 17 17 C 1.36555 * 119.46190 * 359.49048 * 16 4 3 18 18 C 1.40966 * 119.79878 * 179.97438 * 2 1 3 19 19 C 1.41006 * 120.54832 * 0.02562 * 18 2 1 20 20 H 1.07996 * 120.00094 * 24.93348 * 19 18 2 21 21 C 1.40000 * 120.00082 * 204.92573 * 19 18 2 22 22 N 1.30804 * 119.99753 * 14.75549 * 21 19 18 23 23 Si 1.86798 * 120.00214 * 194.75474 * 21 19 18 24 24 H 1.48502 * 109.47287 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47293 * 120.00122 * 23 21 19 26 26 H 1.48501 * 109.47217 * 240.00286 * 23 21 19 27 27 H 1.09007 * 109.46972 * 89.99937 * 1 2 3 28 28 H 1.09003 * 109.47095 * 209.99568 * 1 2 3 29 29 H 1.09005 * 109.47248 * 329.99968 * 1 2 3 30 30 H 1.07999 * 119.58769 * 359.95650 * 6 5 4 31 31 H 1.07993 * 119.98564 * 179.97438 * 7 6 5 32 32 H 1.08006 * 120.20755 * 359.95262 * 9 8 7 33 33 H 0.96706 * 114.00432 * 89.99718 * 11 10 9 34 34 H 1.07997 * 119.55644 * 180.27953 * 12 10 9 35 35 H 1.07998 * 120.05873 * 179.72447 * 13 12 10 36 36 H 1.08003 * 120.26433 * 359.97438 * 15 5 4 37 37 H 1.07999 * 120.26650 * 179.71867 * 16 4 3 38 38 H 1.08001 * 120.79101 * 180.22412 * 17 16 4 39 39 H 0.97007 * 119.99752 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1592 1.1389 0.0000 4 6 3.4891 1.1836 0.0005 5 6 4.1724 2.4944 -0.0001 6 6 5.5782 2.5487 -0.0001 7 6 6.2278 3.7397 -0.0012 8 6 5.4950 4.9423 -0.0013 9 6 6.1472 6.1847 -0.0018 10 6 5.4030 7.3433 0.0028 11 8 6.0333 8.5465 0.0075 12 6 4.0051 7.2949 -0.0035 13 6 3.3479 6.1048 -0.0025 14 6 4.0771 4.9012 -0.0014 15 6 3.4231 3.6607 -0.0006 16 6 4.2517 0.0098 -0.0043 17 6 3.6207 -1.2012 0.0010 18 6 2.2075 -1.2233 0.0005 19 6 1.5099 -2.4487 0.0006 20 1 0.5059 -2.4984 -0.3941 21 6 2.1189 -3.6009 0.5120 22 7 3.1985 -3.5001 1.2436 23 14 1.3897 -5.2820 0.1498 24 1 0.1779 -5.1246 -0.6942 25 1 2.3896 -6.1106 -0.5705 26 1 1.0219 -5.9474 1.4254 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5139 30 1 6.1473 1.6309 0.0010 31 1 7.3075 3.7656 -0.0008 32 1 7.2263 6.2320 -0.0014 33 1 6.2158 8.8985 -0.8746 34 1 3.4402 8.2153 -0.0042 35 1 2.2681 6.0832 -0.0029 36 1 2.3440 3.6144 -0.0010 37 1 5.3305 0.0615 -0.0084 38 1 4.1880 -2.1202 0.0011 39 1 3.6203 -4.2984 1.5983 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205737750.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:14:51 Heat of formation + Delta-G solvation = 11.975216 kcal Electronic energy + Delta-G solvation = -22823.799048 eV Core-core repulsion = 19467.100578 eV Total energy + Delta-G solvation = -3356.698470 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.116 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.15759 -38.76484 -37.73846 -35.25815 -34.21550 -32.51539 -31.72841 -30.71386 -29.57707 -28.37022 -27.04417 -25.19655 -23.13684 -22.78480 -21.81390 -20.90745 -20.20479 -18.51916 -17.56954 -16.72806 -16.59525 -15.89231 -15.48769 -14.86253 -14.67286 -14.38009 -13.97600 -13.66604 -13.39656 -13.18004 -13.11789 -12.93590 -12.56714 -12.34992 -11.90986 -11.76386 -11.68518 -11.53316 -11.39917 -11.04391 -11.02366 -10.84804 -10.63362 -10.56749 -10.32046 -9.87139 -9.71347 -9.51741 -8.45805 -8.30984 -8.15012 -7.81890 -7.18696 -6.98810 -4.62094 0.71447 1.15857 2.18309 2.51720 2.85159 2.90071 2.91816 2.95302 3.37551 3.67349 4.16797 4.32371 4.60987 4.84080 5.01265 5.17000 5.29219 5.40930 5.48386 5.52885 5.58434 5.73814 5.93266 5.98772 6.14554 6.24611 6.27851 6.30916 6.45939 6.52461 6.56957 6.58321 6.65903 6.72327 6.75659 6.86625 6.94820 6.98710 7.17339 7.24026 7.31060 7.60399 7.66467 7.71188 7.81560 8.23288 8.43104 8.53742 9.49520 9.80200 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.036055 B = 0.002850 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.403672 B = 9820.549950 C =10516.943391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.010 3.990 3 N -0.445 5.445 4 C -0.007 4.007 5 C 0.023 3.977 6 C -0.105 4.105 7 C -0.115 4.115 8 C -0.058 4.058 9 C -0.127 4.127 10 C 0.082 3.918 11 O -0.502 6.502 12 C -0.146 4.146 13 C -0.090 4.090 14 C -0.046 4.046 15 C -0.113 4.113 16 C -0.125 4.125 17 C -0.143 4.143 18 C 0.073 3.927 19 C -0.425 4.425 20 H 0.090 0.910 21 C 0.069 3.931 22 N -0.775 5.775 23 Si 0.916 3.084 24 H -0.256 1.256 25 H -0.269 1.269 26 H -0.271 1.271 27 H 0.049 0.951 28 H 0.067 0.933 29 H 0.050 0.950 30 H 0.125 0.875 31 H 0.122 0.878 32 H 0.126 0.874 33 H 0.383 0.617 34 H 0.123 0.877 35 H 0.128 0.872 36 H 0.135 0.865 37 H 0.102 0.898 38 H 0.129 0.871 39 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.326 9.986 -3.166 10.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.137 4.137 3 N -0.153 5.153 4 C -0.141 4.141 5 C 0.022 3.978 6 C -0.124 4.124 7 C -0.133 4.133 8 C -0.059 4.059 9 C -0.145 4.145 10 C 0.038 3.962 11 O -0.312 6.312 12 C -0.165 4.165 13 C -0.108 4.108 14 C -0.046 4.046 15 C -0.132 4.132 16 C -0.145 4.145 17 C -0.167 4.167 18 C 0.068 3.932 19 C -0.453 4.453 20 H 0.108 0.892 21 C -0.151 4.151 22 N -0.398 5.398 23 Si 0.740 3.260 24 H -0.180 1.180 25 H -0.194 1.194 26 H -0.196 1.196 27 H 0.067 0.933 28 H 0.086 0.914 29 H 0.069 0.931 30 H 0.143 0.857 31 H 0.140 0.860 32 H 0.144 0.856 33 H 0.238 0.762 34 H 0.140 0.860 35 H 0.146 0.854 36 H 0.153 0.847 37 H 0.120 0.880 38 H 0.147 0.853 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.027 10.538 -2.402 11.224 hybrid contribution 0.471 -1.570 -0.505 1.715 sum 3.498 8.967 -2.907 10.055 Atomic orbital electron populations 1.20268 0.90949 1.01305 1.00444 1.20999 0.95157 0.87952 1.09547 1.66720 1.08588 1.30422 1.09546 1.18709 0.89121 0.90554 1.15694 1.18663 0.91818 0.92325 0.94963 1.20999 0.93933 0.97913 0.99546 1.20767 0.99091 0.91435 1.01992 1.17852 0.92587 0.93079 1.02361 1.21414 0.99666 0.91201 1.02233 1.18326 0.90200 0.84461 1.03190 1.84820 1.79299 1.33824 1.33234 1.20977 0.93597 0.98466 1.03411 1.20950 0.99765 0.91170 0.98938 1.18113 0.92393 0.93881 1.00256 1.21353 1.00349 0.89824 1.01665 1.21320 0.98602 0.93487 1.01097 1.21360 0.94714 0.96748 1.03904 1.18456 0.92606 0.93210 0.88945 1.19768 1.01485 0.91864 1.32211 0.89156 1.26130 0.94304 1.02189 0.92519 1.69785 1.16290 1.32385 1.21356 0.86108 0.80319 0.80132 0.79478 1.17955 1.19390 1.19573 0.93252 0.91446 0.93093 0.85744 0.86021 0.85592 0.76175 0.85952 0.85377 0.84702 0.88039 0.85303 0.90182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.44 9.58 36.01 0.34 -1.10 16 2 C 0.01 0.23 6.86 -81.81 -0.56 -0.33 16 3 N -0.44 -10.60 9.25 -5.40 -0.05 -10.65 16 4 C -0.01 -0.17 6.73 -82.76 -0.56 -0.73 16 5 C 0.02 0.46 5.87 -104.91 -0.62 -0.15 16 6 C -0.11 -1.80 9.31 -39.58 -0.37 -2.17 16 7 C -0.11 -1.74 9.73 -39.52 -0.38 -2.12 16 8 C -0.06 -0.92 5.75 -106.76 -0.61 -1.53 16 9 C -0.13 -1.73 9.72 -38.99 -0.38 -2.11 16 10 C 0.08 1.08 6.69 -39.16 -0.26 0.82 16 11 O -0.50 -5.60 13.48 -19.22 -0.26 -5.86 16 12 C -0.15 -1.88 9.88 -39.79 -0.39 -2.27 16 13 C -0.09 -1.28 9.75 -39.46 -0.38 -1.66 16 14 C -0.05 -0.77 5.74 -106.82 -0.61 -1.38 16 15 C -0.11 -2.10 9.31 -38.69 -0.36 -2.47 16 16 C -0.12 -2.83 9.37 -39.54 -0.37 -3.20 16 17 C -0.14 -3.49 8.73 -39.01 -0.34 -3.83 16 18 C 0.07 1.82 5.59 -106.64 -0.60 1.22 16 19 C -0.42 -10.12 8.15 -37.87 -0.31 -10.43 16 20 H 0.09 2.03 6.84 -52.49 -0.36 1.67 16 21 C 0.07 1.57 5.22 -17.33 -0.09 1.47 16 22 N -0.77 -18.18 10.83 55.55 0.60 -17.58 16 23 Si 0.92 16.77 29.58 -169.99 -5.03 11.74 16 24 H -0.26 -4.63 7.11 56.52 0.40 -4.23 16 25 H -0.27 -4.87 7.11 56.52 0.40 -4.47 16 26 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 27 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.07 1.31 6.76 -51.93 -0.35 0.96 16 29 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.12 1.96 6.09 -52.49 -0.32 1.64 16 31 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 32 H 0.13 1.45 8.06 -52.48 -0.42 1.03 16 33 H 0.38 2.35 9.06 45.56 0.41 2.76 16 34 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 35 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 36 H 0.14 2.55 7.48 -52.48 -0.39 2.16 16 37 H 0.10 2.00 6.10 -52.49 -0.32 1.68 16 38 H 0.13 3.18 6.17 -52.49 -0.32 2.85 16 39 H 0.29 6.05 8.30 -40.82 -0.34 5.71 16 LS Contribution 331.75 15.07 5.00 5.00 Total: -1.00 -28.08 331.75 -9.92 -37.99 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -3.32 Total: 11.33 kcal Atomic # 6 Polarization: -25.11 SS G_CDS: -6.85 Total: -31.96 kcal Atomic # 7 Polarization: -28.79 SS G_CDS: 0.55 Total: -28.24 kcal Atomic # 8 Polarization: -5.60 SS G_CDS: -0.26 Total: -5.86 kcal Atomic # 14 Polarization: 16.77 SS G_CDS: -5.03 Total: 11.74 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.08 -9.92 -37.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205737750.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.966 kcal (2) G-P(sol) polarization free energy of solvation -28.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds