Wall clock time and date at job start Tue Mar 31 2020 08:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31242 * 119.79777 * 2 1 4 4 C 1.33067 * 121.72350 * 179.97438 * 3 2 1 5 5 C 1.47822 * 119.45946 * 179.97438 * 4 3 2 6 6 C 1.40677 * 119.74630 * 180.02562 * 5 4 3 7 7 C 1.35669 * 120.82453 * 179.97438 * 6 5 4 8 8 C 1.40821 * 120.03058 * 0.04697 * 7 6 5 9 9 C 1.40322 * 120.94586 * 179.97438 * 8 7 6 10 10 C 1.37705 * 119.58820 * 180.22695 * 9 8 7 11 11 O 1.35833 * 119.63841 * 179.74816 * 10 9 8 12 12 C 1.39876 * 120.72864 * 359.45102 * 10 9 8 13 13 C 1.35947 * 120.89438 * 0.57755 * 12 10 9 14 14 C 1.40732 * 119.87994 * 359.70404 * 13 12 10 15 15 C 1.38630 * 119.74462 * 0.02562 * 5 4 3 16 16 C 1.39983 * 121.08621 * 0.25616 * 4 3 2 17 17 C 1.36555 * 119.46190 * 359.49048 * 16 4 3 18 18 C 1.40966 * 119.79878 * 179.97438 * 2 1 3 19 19 C 1.41006 * 120.54832 * 0.02562 * 18 2 1 20 20 H 1.07996 * 120.00094 * 24.93348 * 19 18 2 21 21 C 1.40000 * 120.00082 * 204.92573 * 19 18 2 22 22 N 1.30804 * 119.99753 * 14.75549 * 21 19 18 23 23 Si 1.86798 * 120.00214 * 194.75474 * 21 19 18 24 24 H 1.48502 * 109.47287 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47293 * 120.00122 * 23 21 19 26 26 H 1.48501 * 109.47217 * 240.00286 * 23 21 19 27 27 H 1.09007 * 109.46972 * 89.99937 * 1 2 3 28 28 H 1.09003 * 109.47095 * 209.99568 * 1 2 3 29 29 H 1.09005 * 109.47248 * 329.99968 * 1 2 3 30 30 H 1.07999 * 119.58769 * 359.95650 * 6 5 4 31 31 H 1.07993 * 119.98564 * 179.97438 * 7 6 5 32 32 H 1.08006 * 120.20755 * 359.95262 * 9 8 7 33 33 H 0.96706 * 114.00432 * 89.99718 * 11 10 9 34 34 H 1.07997 * 119.55644 * 180.27953 * 12 10 9 35 35 H 1.07998 * 120.05873 * 179.72447 * 13 12 10 36 36 H 1.08003 * 120.26433 * 359.97438 * 15 5 4 37 37 H 1.07999 * 120.26650 * 179.71867 * 16 4 3 38 38 H 1.08001 * 120.79101 * 180.22412 * 17 16 4 39 39 H 0.97007 * 119.99752 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1592 1.1389 0.0000 4 6 3.4891 1.1836 0.0005 5 6 4.1724 2.4944 -0.0001 6 6 5.5782 2.5487 -0.0001 7 6 6.2278 3.7397 -0.0012 8 6 5.4950 4.9423 -0.0013 9 6 6.1472 6.1847 -0.0018 10 6 5.4030 7.3433 0.0028 11 8 6.0333 8.5465 0.0075 12 6 4.0051 7.2949 -0.0035 13 6 3.3479 6.1048 -0.0025 14 6 4.0771 4.9012 -0.0014 15 6 3.4231 3.6607 -0.0006 16 6 4.2517 0.0098 -0.0043 17 6 3.6207 -1.2012 0.0010 18 6 2.2075 -1.2233 0.0005 19 6 1.5099 -2.4487 0.0006 20 1 0.5059 -2.4984 -0.3941 21 6 2.1189 -3.6009 0.5120 22 7 3.1985 -3.5001 1.2436 23 14 1.3897 -5.2820 0.1498 24 1 0.1779 -5.1246 -0.6942 25 1 2.3896 -6.1106 -0.5705 26 1 1.0219 -5.9474 1.4254 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5139 30 1 6.1473 1.6309 0.0010 31 1 7.3075 3.7656 -0.0008 32 1 7.2263 6.2320 -0.0014 33 1 6.2158 8.8985 -0.8746 34 1 3.4402 8.2153 -0.0042 35 1 2.2681 6.0832 -0.0029 36 1 2.3440 3.6144 -0.0010 37 1 5.3305 0.0615 -0.0084 38 1 4.1880 -2.1202 0.0011 39 1 3.6203 -4.2984 1.5983 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205737750.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:14:50 Heat of formation + Delta-G solvation = -2.724541 kcal Electronic energy + Delta-G solvation = -22824.436477 eV Core-core repulsion = 19467.100578 eV Total energy + Delta-G solvation = -3357.335899 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.116 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.36311 -40.37654 -38.87551 -36.55990 -35.77738 -33.89182 -33.28696 -32.36929 -30.81017 -29.68029 -28.73035 -26.76440 -24.43808 -24.18740 -23.08227 -22.39591 -21.84097 -19.63845 -19.23372 -18.02135 -17.87371 -17.29102 -16.83369 -16.31201 -15.98645 -15.69914 -15.38389 -15.06926 -15.00424 -14.53479 -14.30515 -14.21371 -14.02937 -13.67981 -13.46530 -13.36992 -13.18972 -13.06597 -12.85704 -12.66617 -12.33453 -12.22327 -12.01263 -11.86667 -11.57342 -11.34416 -11.26648 -10.84177 -10.20587 -9.94321 -9.73729 -9.18553 -8.78769 -8.51122 -6.40562 -0.49228 -0.07027 0.71387 1.04069 1.20541 1.39114 1.49293 1.54887 2.04423 2.15280 2.70564 3.16147 3.33373 3.67711 3.71409 3.73361 3.93964 4.13196 4.20968 4.33462 4.36430 4.42039 4.49546 4.56709 4.72028 4.85284 4.93256 4.97141 4.98371 5.04281 5.06831 5.14165 5.24624 5.30109 5.34619 5.45328 5.49518 5.54763 5.73538 5.81395 5.85276 5.95057 6.05500 6.10141 6.45732 6.67840 6.76052 6.90701 7.70529 8.15898 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.036055 B = 0.002850 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.403672 B = 9820.549950 C =10516.943391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.014 4.014 3 N -0.461 5.461 4 C -0.012 4.012 5 C -0.012 4.012 6 C -0.120 4.120 7 C -0.102 4.102 8 C -0.065 4.065 9 C -0.134 4.134 10 C 0.096 3.904 11 O -0.506 6.506 12 C -0.139 4.139 13 C -0.099 4.099 14 C -0.067 4.067 15 C -0.115 4.115 16 C -0.133 4.133 17 C -0.163 4.163 18 C 0.042 3.958 19 C -0.452 4.452 20 H 0.096 0.904 21 C 0.032 3.968 22 N -0.809 5.809 23 Si 0.990 3.010 24 H -0.252 1.252 25 H -0.264 1.264 26 H -0.265 1.265 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.059 0.941 30 H 0.132 0.868 31 H 0.158 0.842 32 H 0.151 0.849 33 H 0.410 0.590 34 H 0.150 0.850 35 H 0.141 0.859 36 H 0.121 0.879 37 H 0.126 0.874 38 H 0.120 0.880 39 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.332 12.215 -3.506 13.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.159 4.159 3 N -0.169 5.169 4 C -0.146 4.146 5 C -0.013 4.013 6 C -0.138 4.138 7 C -0.120 4.120 8 C -0.065 4.065 9 C -0.152 4.152 10 C 0.052 3.948 11 O -0.319 6.319 12 C -0.158 4.158 13 C -0.117 4.117 14 C -0.067 4.067 15 C -0.134 4.134 16 C -0.153 4.153 17 C -0.188 4.188 18 C 0.037 3.963 19 C -0.480 4.480 20 H 0.114 0.886 21 C -0.186 4.186 22 N -0.433 5.433 23 Si 0.809 3.191 24 H -0.175 1.175 25 H -0.189 1.189 26 H -0.190 1.190 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.078 0.922 30 H 0.150 0.850 31 H 0.175 0.825 32 H 0.169 0.831 33 H 0.269 0.731 34 H 0.167 0.833 35 H 0.159 0.841 36 H 0.139 0.861 37 H 0.143 0.857 38 H 0.137 0.863 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.030 12.797 -2.759 13.697 hybrid contribution 0.308 -1.797 -0.401 1.866 sum 4.339 11.000 -3.160 12.240 Atomic orbital electron populations 1.20251 0.88730 1.01778 1.01435 1.21577 0.96952 0.87843 1.09543 1.66823 1.09267 1.30440 1.10411 1.19303 0.89135 0.92185 1.14005 1.18722 0.93257 0.91200 0.98072 1.21067 0.92746 0.99301 1.00704 1.21132 1.00792 0.90364 0.99670 1.18142 0.92299 0.94323 1.01746 1.21630 1.01022 0.90365 1.02194 1.18452 0.90321 0.85113 1.00922 1.84758 1.78927 1.32707 1.35525 1.21301 0.93963 0.98919 1.01567 1.21130 1.00604 0.90855 0.99143 1.18287 0.93360 0.93768 1.01273 1.21337 0.99782 0.90730 1.01579 1.21575 0.99942 0.92988 1.00798 1.21416 0.95029 0.97060 1.05326 1.18809 0.93133 0.94285 0.90075 1.19982 1.02075 0.92414 1.33564 0.88600 1.26982 0.94465 1.05506 0.91635 1.69832 1.17576 1.33768 1.22169 0.85026 0.79536 0.75156 0.79350 1.17461 1.18908 1.18978 0.91893 0.91235 0.92186 0.84985 0.82452 0.83114 0.73113 0.83275 0.84130 0.86087 0.85668 0.86257 0.89433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.65 9.58 71.24 0.68 -1.97 16 2 C -0.01 -0.70 6.86 43.31 0.30 -0.40 16 3 N -0.46 -22.99 9.25 -171.01 -1.58 -24.57 16 4 C -0.01 -0.57 6.73 41.92 0.28 -0.29 16 5 C -0.01 -0.48 5.87 -20.05 -0.12 -0.60 16 6 C -0.12 -4.05 9.31 22.27 0.21 -3.84 16 7 C -0.10 -2.86 9.73 22.31 0.22 -2.65 16 8 C -0.06 -1.88 5.75 -21.25 -0.12 -2.00 16 9 C -0.13 -3.14 9.72 22.65 0.22 -2.92 16 10 C 0.10 2.13 6.69 22.54 0.15 2.28 16 11 O -0.51 -8.86 13.48 -91.67 -1.24 -10.10 16 12 C -0.14 -3.09 9.88 22.13 0.22 -2.87 16 13 C -0.10 -2.62 9.75 22.35 0.22 -2.40 16 14 C -0.07 -2.15 5.74 -21.29 -0.12 -2.28 16 15 C -0.12 -4.38 9.31 22.85 0.21 -4.17 16 16 C -0.13 -6.30 9.37 22.30 0.21 -6.09 16 17 C -0.16 -8.44 8.73 22.64 0.20 -8.24 16 18 C 0.04 2.19 5.59 -21.17 -0.12 2.07 16 19 C -0.45 -22.38 8.15 23.38 0.19 -22.19 16 20 H 0.10 4.44 6.84 -2.91 -0.02 4.42 16 21 C 0.03 1.46 5.22 85.27 0.45 1.90 16 22 N -0.81 -39.35 10.83 21.84 0.24 -39.11 16 23 Si 0.99 34.71 29.58 68.60 2.03 36.74 16 24 H -0.25 -8.53 7.11 99.48 0.71 -7.82 16 25 H -0.26 -9.00 7.11 99.48 0.71 -8.29 16 26 H -0.27 -8.98 7.11 99.48 0.71 -8.27 16 27 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 28 H 0.07 2.77 6.76 -2.39 -0.02 2.76 16 29 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 30 H 0.13 4.12 6.09 -2.91 -0.02 4.10 16 31 H 0.16 3.21 8.06 -2.91 -0.02 3.19 16 32 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 33 H 0.41 2.95 9.06 -74.05 -0.67 2.28 16 34 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 35 H 0.14 3.25 8.06 -2.91 -0.02 3.22 16 36 H 0.12 4.80 7.48 -2.91 -0.02 4.78 16 37 H 0.13 5.10 6.10 -2.91 -0.02 5.08 16 38 H 0.12 6.25 6.17 -2.91 -0.02 6.23 16 39 H 0.29 12.79 8.30 -92.70 -0.77 12.02 16 Total: -1.00 -63.34 331.75 3.15 -60.19 By element: Atomic # 1 Polarization: 33.08 SS G_CDS: 0.44 Total: 33.51 kcal Atomic # 6 Polarization: -59.93 SS G_CDS: 3.27 Total: -56.67 kcal Atomic # 7 Polarization: -62.33 SS G_CDS: -1.35 Total: -63.68 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: -1.24 Total: -10.10 kcal Atomic # 14 Polarization: 34.71 SS G_CDS: 2.03 Total: 36.74 kcal Total: -63.34 3.15 -60.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205737750.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.461 kcal (2) G-P(sol) polarization free energy of solvation -63.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds