Wall clock time and date at job start Tue Mar 31 2020 08:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36213 * 120.05951 * 2 1 4 4 C 1.40016 * 120.11563 * 179.97438 * 3 2 1 5 5 C 1.47801 * 119.88722 * 179.97438 * 4 3 2 6 6 C 1.38856 * 120.29061 * 130.00322 * 5 4 3 7 7 C 1.40594 * 118.06798 * 179.97438 * 6 5 4 8 8 C 1.40531 * 121.12971 * 180.02562 * 7 6 5 9 9 C 1.36177 * 119.63607 * 180.02562 * 8 7 6 10 10 C 1.39297 * 120.82504 * 359.91415 * 9 8 7 11 11 C 1.36184 * 121.07311 * 0.06352 * 10 9 8 12 12 C 1.40490 * 119.82909 * 359.97438 * 11 10 9 13 13 N 1.33880 * 120.74007 * 180.02562 * 12 11 10 14 14 C 1.31310 * 121.65406 * 179.71587 * 13 12 11 15 15 O 1.35479 * 119.31322 * 180.28696 * 14 13 12 16 16 C 1.40049 * 120.21920 * 0.02562 * 4 3 2 17 17 C 1.36178 * 120.11866 * 359.96062 * 16 4 3 18 18 C 1.40951 * 120.05682 * 179.97438 * 2 1 3 19 19 C 1.40974 * 120.10495 * 359.75611 * 18 2 1 20 20 H 1.08000 * 120.00541 * 329.61227 * 19 18 2 21 21 C 1.40005 * 119.99648 * 149.62515 * 19 18 2 22 22 N 1.30806 * 119.99852 * 162.25975 * 21 19 18 23 23 Si 1.86803 * 120.00107 * 342.25411 * 21 19 18 24 24 H 1.48495 * 109.47117 * 95.38997 * 23 21 19 25 25 H 1.48498 * 109.47181 * 215.39301 * 23 21 19 26 26 H 1.48503 * 109.46754 * 335.39006 * 23 21 19 27 27 H 1.08994 * 109.47390 * 270.03064 * 1 2 3 28 28 H 1.09009 * 109.46457 * 30.02754 * 1 2 3 29 29 H 1.09000 * 109.46720 * 150.02309 * 1 2 3 30 30 H 1.08001 * 119.94283 * 359.97438 * 3 2 1 31 31 H 1.08001 * 120.96648 * 0.02562 * 6 5 4 32 32 H 1.08002 * 120.18432 * 359.95666 * 8 7 6 33 33 H 1.08000 * 119.58444 * 179.97438 * 9 8 7 34 34 H 1.08002 * 119.46457 * 180.02562 * 10 9 8 35 35 H 1.07997 * 120.08782 * 179.97438 * 11 10 9 36 36 H 0.96699 * 114.00566 * 270.25871 * 15 14 13 37 37 H 1.08001 * 119.94069 * 179.97438 * 16 4 3 38 38 H 1.07998 * 120.06489 * 180.02562 * 17 16 4 39 39 H 0.97006 * 119.99725 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1893 1.1789 0.0000 4 6 3.5895 1.1803 0.0005 5 6 4.3247 2.4625 0.0000 6 6 5.3414 2.6872 0.9186 7 6 6.0102 3.9232 0.8759 8 6 7.0492 4.2184 1.7750 9 6 7.6760 5.4255 1.7068 10 6 7.3015 6.3715 0.7554 11 6 6.2993 6.1181 -0.1312 12 6 5.6275 4.8848 -0.0928 13 7 4.6400 4.6163 -0.9560 14 6 4.0039 3.4677 -0.9397 15 8 3.0157 3.2439 -1.8391 16 6 4.2956 -0.0292 0.0005 17 6 3.6228 -1.2132 0.0008 18 6 2.2130 -1.2200 0.0005 19 6 1.5116 -2.4428 0.0063 20 1 0.5448 -2.5087 0.4831 21 6 2.0685 -3.5720 -0.6060 22 7 1.6135 -4.7639 -0.3171 23 14 3.4611 -3.3766 -1.8356 24 1 4.7620 -3.5586 -1.1431 25 1 3.3232 -4.3966 -2.9060 26 1 3.4051 -2.0192 -2.4352 27 1 -0.3634 0.0005 1.0276 28 1 -0.3632 0.8898 -0.5143 29 1 -0.3633 -0.8902 -0.5135 30 1 1.6494 2.1143 -0.0004 31 1 5.6111 1.9342 1.6444 32 1 7.3482 3.4925 2.5166 33 1 8.4741 5.6516 2.3984 34 1 7.8138 7.3216 0.7207 35 1 6.0216 6.8632 -0.8619 36 1 2.1390 3.5176 -1.5365 37 1 5.3756 -0.0229 0.0005 38 1 4.1681 -2.1453 0.0012 39 1 1.9991 -5.5463 -0.7416 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238881900.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:07:04 Heat of formation + Delta-G solvation = 4.412068 kcal Electronic energy + Delta-G solvation = -23423.093811 eV Core-core repulsion = 20066.067378 eV Total energy + Delta-G solvation = -3357.026433 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.116 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.88464 -40.01912 -39.07377 -36.76357 -35.79330 -34.71129 -33.34906 -32.58122 -30.65021 -30.45794 -28.11960 -26.53204 -24.89955 -24.24167 -23.30605 -22.75743 -21.32693 -19.96082 -19.39487 -18.80842 -18.10244 -17.26585 -17.07645 -16.14256 -16.00604 -15.86826 -15.55070 -15.19467 -14.97686 -14.67870 -14.60398 -14.37731 -14.19741 -13.96414 -13.58692 -13.21970 -12.99100 -12.88836 -12.72513 -12.62289 -12.43949 -12.30960 -12.26275 -11.98495 -11.68900 -11.46946 -11.37791 -11.00554 -10.49280 -9.77793 -9.40944 -9.26583 -8.96037 -8.92817 -6.45740 -0.61664 -0.29140 0.68320 0.90763 1.04918 1.24333 1.37817 1.46274 1.88648 2.08969 2.54976 2.64392 3.08794 3.44722 3.59028 3.70376 3.79828 4.00067 4.16753 4.23672 4.28968 4.32725 4.43315 4.46613 4.59135 4.80491 4.82710 4.89173 4.97168 5.02805 5.04040 5.10957 5.13661 5.26781 5.28853 5.44812 5.50277 5.53304 5.68200 5.79737 5.92577 5.94792 6.00501 6.23188 6.37745 6.60784 6.72879 6.83211 6.88310 8.12004 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.023255 B = 0.003691 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.763532 B = 7583.365747 C = 8047.516579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.189 4.189 3 C -0.052 4.052 4 C -0.170 4.170 5 C -0.083 4.083 6 C -0.055 4.055 7 C -0.116 4.116 8 C -0.100 4.100 9 C -0.115 4.115 10 C -0.090 4.090 11 C -0.116 4.116 12 C 0.113 3.887 13 N -0.520 5.520 14 C 0.337 3.663 15 O -0.485 6.485 16 C -0.066 4.066 17 C -0.250 4.250 18 C 0.079 3.921 19 C -0.463 4.463 20 H 0.070 0.930 21 C 0.053 3.947 22 N -0.839 5.839 23 Si 0.957 3.043 24 H -0.260 1.260 25 H -0.278 1.278 26 H -0.259 1.259 27 H 0.054 0.946 28 H 0.072 0.928 29 H 0.048 0.952 30 H 0.122 0.878 31 H 0.156 0.844 32 H 0.152 0.848 33 H 0.162 0.838 34 H 0.163 0.837 35 H 0.138 0.862 36 H 0.413 0.587 37 H 0.114 0.886 38 H 0.096 0.904 39 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.175 17.986 3.522 20.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.190 4.190 3 C -0.070 4.070 4 C -0.172 4.172 5 C -0.086 4.086 6 C -0.080 4.080 7 C -0.118 4.118 8 C -0.118 4.118 9 C -0.132 4.132 10 C -0.109 4.109 11 C -0.135 4.135 12 C -0.008 4.008 13 N -0.240 5.240 14 C 0.144 3.856 15 O -0.294 6.294 16 C -0.084 4.084 17 C -0.269 4.269 18 C 0.076 3.924 19 C -0.492 4.492 20 H 0.088 0.912 21 C -0.163 4.163 22 N -0.465 5.465 23 Si 0.781 3.219 24 H -0.185 1.185 25 H -0.204 1.204 26 H -0.183 1.183 27 H 0.072 0.928 28 H 0.091 0.909 29 H 0.067 0.933 30 H 0.139 0.861 31 H 0.173 0.827 32 H 0.169 0.831 33 H 0.180 0.820 34 H 0.181 0.819 35 H 0.156 0.844 36 H 0.273 0.727 37 H 0.132 0.868 38 H 0.114 0.886 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 10.326 18.125 2.564 21.017 hybrid contribution -0.199 -1.293 0.137 1.316 sum 10.127 16.831 2.701 19.828 Atomic orbital electron populations 1.20453 0.91180 1.01692 1.00907 1.19807 0.96355 0.92374 1.10494 1.20435 0.92506 0.96681 0.97391 1.18032 0.92851 0.90221 1.16051 1.19852 0.98408 0.94890 0.95466 1.22054 0.93003 0.96078 0.96899 1.19036 0.99349 0.94580 0.98875 1.21340 0.93991 0.98776 0.97729 1.21348 1.00241 0.92786 0.98869 1.21321 0.95332 1.00846 0.93414 1.20982 0.96766 0.94660 1.01055 1.19011 0.93709 0.95929 0.92187 1.67360 1.10297 1.21237 1.25076 1.19556 0.90945 0.88098 0.87050 1.84695 1.19045 1.84275 1.41420 1.20601 0.98499 0.91693 0.97603 1.20775 0.94484 0.97034 1.14653 1.17863 0.91885 0.93195 0.89431 1.19475 1.05092 0.92658 1.31981 0.91203 1.26744 0.98328 0.93907 0.97288 1.69701 1.40089 0.99907 1.36781 0.85604 0.78698 0.79076 0.78488 1.18549 1.20450 1.18320 0.92754 0.90925 0.93326 0.86053 0.82683 0.83068 0.82000 0.81933 0.84375 0.72675 0.86809 0.88597 0.89477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.23 9.40 71.24 0.67 -2.56 16 2 C -0.19 -8.21 5.90 -19.67 -0.12 -8.33 16 3 C -0.05 -2.00 8.34 22.23 0.19 -1.81 16 4 C -0.17 -6.60 5.29 -19.88 -0.11 -6.71 16 5 C -0.08 -2.83 5.49 -19.85 -0.11 -2.94 16 6 C -0.06 -1.61 9.38 22.99 0.22 -1.40 16 7 C -0.12 -3.10 5.74 -21.27 -0.12 -3.22 16 8 C -0.10 -1.88 9.77 22.35 0.22 -1.66 16 9 C -0.11 -1.64 9.96 22.04 0.22 -1.42 16 10 C -0.09 -1.36 9.94 22.05 0.22 -1.14 16 11 C -0.12 -2.56 9.97 22.34 0.22 -2.33 16 12 C 0.11 3.28 6.61 40.25 0.27 3.54 16 13 N -0.52 -17.38 10.33 -301.36 -3.11 -20.49 16 14 C 0.34 11.54 7.66 85.52 0.65 12.19 16 15 O -0.49 -15.79 12.15 -87.78 -1.07 -16.86 16 16 C -0.07 -2.73 9.45 22.23 0.21 -2.52 16 17 C -0.25 -11.73 7.10 22.46 0.16 -11.57 16 18 C 0.08 3.90 5.09 -21.27 -0.11 3.79 16 19 C -0.46 -24.84 8.50 23.37 0.20 -24.64 16 20 H 0.07 3.96 7.23 -2.91 -0.02 3.94 16 21 C 0.05 2.79 5.40 85.27 0.46 3.25 16 22 N -0.84 -44.74 13.93 21.84 0.30 -44.44 16 23 Si 0.96 42.92 24.52 68.60 1.68 44.60 16 24 H -0.26 -11.09 6.71 99.48 0.67 -10.43 16 25 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 26 H -0.26 -12.22 6.86 99.48 0.68 -11.54 16 27 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.07 2.24 8.08 -2.38 -0.02 2.22 16 29 H 0.05 1.99 6.86 -2.39 -0.02 1.98 16 30 H 0.12 3.81 7.10 -2.91 -0.02 3.79 16 31 H 0.16 3.95 8.06 -2.91 -0.02 3.93 16 32 H 0.15 2.11 8.06 -2.91 -0.02 2.08 16 33 H 0.16 1.15 8.06 -2.91 -0.02 1.13 16 34 H 0.16 1.28 8.06 -2.91 -0.02 1.25 16 35 H 0.14 2.74 8.06 -2.91 -0.02 2.72 16 36 H 0.41 9.51 8.22 -74.06 -0.61 8.90 16 37 H 0.11 4.16 8.03 -2.91 -0.02 4.14 16 38 H 0.10 4.52 4.77 -2.91 -0.01 4.51 16 39 H 0.29 14.17 8.30 -92.70 -0.77 13.40 16 Total: -1.00 -65.35 327.60 1.57 -63.78 By element: Atomic # 1 Polarization: 22.47 SS G_CDS: 0.43 Total: 22.89 kcal Atomic # 6 Polarization: -52.82 SS G_CDS: 3.34 Total: -49.48 kcal Atomic # 7 Polarization: -62.12 SS G_CDS: -2.81 Total: -64.93 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: -1.07 Total: -16.86 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 1.68 Total: 44.60 kcal Total: -65.35 1.57 -63.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238881900.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.189 kcal (2) G-P(sol) polarization free energy of solvation -65.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds