Wall clock time and date at job start Tue Mar 31 2020 08:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38501 * 119.81603 * 2 1 4 4 C 1.37868 * 120.27961 * 179.72347 * 3 2 1 5 5 C 1.39620 * 119.90364 * 0.54973 * 4 3 2 6 6 C 1.47782 * 120.17464 * 179.74730 * 5 4 3 7 7 N 1.31632 * 119.45118 * 130.26263 * 6 5 4 8 8 C 1.33654 * 121.74235 * 180.02562 * 7 6 5 9 9 C 1.40475 * 120.98010 * 180.02562 * 8 7 6 10 10 C 1.36244 * 119.70977 * 179.97438 * 9 8 7 11 11 C 1.39165 * 121.74995 * 359.97438 * 10 9 8 12 12 C 1.36133 * 121.46533 * 0.02562 * 11 10 9 13 13 C 1.40785 * 119.47267 * 359.97438 * 12 11 10 14 14 C 1.40025 * 121.40191 * 180.02562 * 13 12 11 15 15 C 1.40365 * 117.97258 * 180.02562 * 14 13 12 16 16 C 1.40823 * 120.40863 * 179.97438 * 15 14 13 17 17 H 1.07998 * 119.99284 * 148.87022 * 16 15 14 18 18 C 1.40087 * 120.00207 * 328.86522 * 16 15 14 19 19 N 1.30763 * 120.00029 * 348.46832 * 18 16 15 20 20 Si 1.86802 * 119.99966 * 168.46382 * 18 16 15 21 21 H 1.48498 * 109.47183 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47182 * 120.00408 * 20 18 16 23 23 H 1.48504 * 109.46605 * 240.00367 * 20 18 16 24 24 C 1.40100 * 119.64192 * 359.47327 * 5 4 3 25 25 O 1.35752 * 120.14280 * 180.27205 * 24 5 4 26 26 C 1.38146 * 119.81338 * 180.02562 * 2 1 3 27 27 H 1.09001 * 109.46965 * 269.98259 * 1 2 3 28 28 H 1.08998 * 109.46984 * 29.97228 * 1 2 3 29 29 H 1.09000 * 109.47332 * 149.98096 * 1 2 3 30 30 H 1.08001 * 119.86205 * 0.02562 * 3 2 1 31 31 H 1.07999 * 120.04375 * 180.30078 * 4 3 2 32 32 H 1.07997 * 120.14720 * 0.25575 * 9 8 7 33 33 H 1.07996 * 119.12493 * 180.02562 * 10 9 8 34 34 H 1.07991 * 119.26998 * 179.97438 * 11 10 9 35 35 H 1.08001 * 120.26124 * 179.97438 * 12 11 10 36 36 H 1.07998 * 121.00994 * 359.95805 * 14 13 12 37 37 H 0.97000 * 120.00640 * 179.97438 * 19 18 16 38 38 H 0.96701 * 114.00166 * 90.00191 * 25 24 5 39 39 H 1.08006 * 119.95828 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2017 0.0000 4 6 3.5743 1.2128 0.0057 5 6 4.2802 0.0082 0.0000 6 6 5.7580 0.0132 0.0005 7 7 6.4074 -0.7297 0.8716 8 6 7.7430 -0.7595 0.9130 9 6 8.4198 -1.5587 1.8493 10 6 9.7820 -1.5699 1.8681 11 6 10.5330 -0.8066 0.9792 12 6 9.9389 -0.0113 0.0478 13 6 8.5338 0.0432 -0.0219 14 6 7.8806 0.8469 -0.9642 15 6 6.4770 0.8471 -0.9695 16 6 5.7678 1.6368 -1.8949 17 1 4.8053 1.3088 -2.2588 18 6 6.3106 2.8480 -2.3432 19 7 7.3558 3.3572 -1.7450 20 14 5.5412 3.7354 -3.7958 21 1 4.3784 2.9566 -4.2923 22 1 5.0887 5.0838 -3.3690 23 1 6.5454 3.8708 -4.8814 24 6 3.5799 -1.2052 -0.0004 25 8 4.2560 -2.3824 -0.0004 26 6 2.1938 -1.1986 -0.0005 27 1 -0.3633 -0.0003 1.0277 28 1 -0.3633 0.8902 -0.5134 29 1 -0.3634 -0.8898 -0.5141 30 1 1.6504 2.1339 0.0004 31 1 4.1074 2.1521 0.0106 32 1 7.8627 -2.1652 2.5480 33 1 10.2926 -2.1881 2.5916 34 1 11.6110 -0.8455 1.0300 35 1 10.5407 0.5733 -0.6323 36 1 8.4399 1.4493 -1.6648 37 1 7.7320 4.1956 -2.0556 38 1 4.4516 -2.7237 0.8830 39 1 1.6501 -2.1318 -0.0014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241036148.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:13:16 Heat of formation + Delta-G solvation = 13.451419 kcal Electronic energy + Delta-G solvation = -23923.374115 eV Core-core repulsion = 20566.739658 eV Total energy + Delta-G solvation = -3356.634457 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.116 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.55382 -38.63431 -36.29587 -35.98364 -34.15483 -32.36834 -31.71526 -29.52021 -29.45679 -28.96985 -26.48939 -25.55725 -22.67050 -22.23628 -21.67585 -20.73122 -20.37158 -18.03881 -17.41208 -16.62883 -16.24390 -15.63151 -15.23742 -14.86802 -14.70509 -14.16652 -13.58499 -13.44576 -13.34954 -13.22461 -12.92309 -12.77540 -12.45689 -12.31552 -11.92798 -11.80832 -11.49712 -11.35702 -11.27873 -11.08078 -11.00354 -10.79820 -10.64284 -10.43567 -10.04765 -9.83273 -9.55992 -9.01681 -8.45855 -8.25463 -8.05492 -7.31369 -7.13751 -6.97262 -4.57505 1.31787 1.81202 1.86332 2.11118 2.85923 2.94693 3.00508 3.41869 3.72940 3.82806 4.16343 4.64728 4.75224 5.10586 5.21598 5.28178 5.44064 5.59646 5.62905 5.67162 5.70519 5.71574 5.85505 5.95859 6.11814 6.17421 6.24406 6.29584 6.40298 6.47556 6.56802 6.73587 6.85047 6.89707 6.94417 7.02756 7.10685 7.26579 7.31045 7.34379 7.40810 7.69181 7.75327 7.88416 8.23103 8.28049 8.46100 8.52628 9.19755 9.90072 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.010168 B = 0.006763 C = 0.004268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2753.079023 B = 4138.971981 C = 6558.662247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.084 4.084 3 C -0.139 4.139 4 C -0.064 4.064 5 C -0.030 4.030 6 C 0.128 3.872 7 N -0.459 5.459 8 C 0.031 3.969 9 C -0.062 4.062 10 C -0.177 4.177 11 C -0.119 4.119 12 C -0.128 4.128 13 C -0.047 4.047 14 C -0.167 4.167 15 C 0.079 3.921 16 C -0.429 4.429 17 H 0.089 0.911 18 C 0.071 3.929 19 N -0.779 5.779 20 Si 0.911 3.089 21 H -0.256 1.256 22 H -0.271 1.271 23 H -0.269 1.269 24 C 0.126 3.874 25 O -0.490 6.490 26 C -0.157 4.157 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.119 0.881 31 H 0.136 0.864 32 H 0.112 0.888 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.111 0.889 36 H 0.130 0.870 37 H 0.286 0.714 38 H 0.387 0.613 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.000 -2.535 2.422 6.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.084 4.084 3 C -0.157 4.157 4 C -0.083 4.083 5 C -0.031 4.031 6 C -0.027 4.027 7 N -0.165 5.165 8 C -0.091 4.091 9 C -0.080 4.080 10 C -0.197 4.197 11 C -0.138 4.138 12 C -0.147 4.147 13 C -0.049 4.049 14 C -0.192 4.192 15 C 0.074 3.926 16 C -0.458 4.458 17 H 0.107 0.893 18 C -0.149 4.149 19 N -0.403 5.403 20 Si 0.735 3.265 21 H -0.179 1.179 22 H -0.196 1.196 23 H -0.194 1.194 24 C 0.080 3.920 25 O -0.300 6.300 26 C -0.176 4.176 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.137 0.863 31 H 0.154 0.846 32 H 0.130 0.870 33 H 0.123 0.877 34 H 0.121 0.879 35 H 0.129 0.871 36 H 0.147 0.853 37 H 0.097 0.903 38 H 0.243 0.757 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -6.212 -2.827 2.458 7.254 hybrid contribution 0.472 0.972 -0.742 1.311 sum -5.741 -1.854 1.715 6.272 Atomic orbital electron populations 1.20736 0.91613 1.02363 1.01828 1.19688 0.95531 0.92759 1.00461 1.20884 0.94050 0.97130 1.03642 1.21286 0.93268 0.98001 0.95773 1.18867 0.91487 0.92420 1.00375 1.20931 0.90923 0.97345 0.93532 1.67335 1.08574 1.18528 1.22077 1.19283 0.88391 1.01960 0.99508 1.20466 0.93646 0.97186 0.96731 1.20262 0.93745 1.03735 1.01977 1.20469 0.98541 0.98081 0.96677 1.20864 0.93720 1.00465 0.99689 1.19711 0.93313 0.96067 0.95846 1.21453 0.93674 1.02797 1.01269 1.19195 0.92304 0.90278 0.90793 1.19615 1.04746 1.02120 1.19284 0.89313 1.26003 0.94402 0.97552 0.96908 1.69758 1.18362 1.17337 1.34799 0.86176 0.80351 0.79333 0.80676 1.17933 1.19560 1.19444 1.18527 0.89187 0.84993 0.99260 1.84696 1.76728 1.35352 1.33226 1.21053 0.93100 0.97858 1.05585 0.91591 0.91740 0.91951 0.86262 0.84631 0.86994 0.87724 0.87865 0.87119 0.85271 0.90282 0.75667 0.86165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 10.00 36.01 0.36 -0.83 16 2 C -0.08 -1.25 5.88 -104.56 -0.62 -1.87 16 3 C -0.14 -2.23 9.67 -39.62 -0.38 -2.61 16 4 C -0.06 -1.24 8.09 -39.20 -0.32 -1.55 16 5 C -0.03 -0.64 5.11 -104.78 -0.54 -1.17 16 6 C 0.13 3.09 6.21 -80.62 -0.50 2.59 16 7 N -0.46 -10.89 9.56 -4.85 -0.05 -10.94 16 8 C 0.03 0.73 6.74 -82.94 -0.56 0.17 16 9 C -0.06 -1.25 9.98 -39.46 -0.39 -1.64 16 10 C -0.18 -3.24 9.90 -39.95 -0.40 -3.63 16 11 C -0.12 -2.22 9.91 -39.99 -0.40 -2.61 16 12 C -0.13 -2.69 9.80 -39.38 -0.39 -3.08 16 13 C -0.05 -1.13 5.87 -104.97 -0.62 -1.75 16 14 C -0.17 -4.23 8.50 -38.11 -0.32 -4.56 16 15 C 0.08 2.01 5.64 -104.69 -0.59 1.42 16 16 C -0.43 -10.41 7.00 -37.91 -0.27 -10.68 16 17 H 0.09 2.12 6.90 -52.49 -0.36 1.76 16 18 C 0.07 1.64 5.23 -17.31 -0.09 1.55 16 19 N -0.78 -18.59 11.07 55.56 0.61 -17.97 16 20 Si 0.91 17.34 29.58 -169.99 -5.03 12.32 16 21 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 22 H -0.27 -5.04 7.11 56.52 0.40 -4.63 16 23 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 24 C 0.13 2.41 6.68 -38.75 -0.26 2.16 16 25 O -0.49 -9.26 12.47 -18.96 -0.24 -9.50 16 26 C -0.16 -2.54 9.62 -39.48 -0.38 -2.92 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 29 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 30 H 0.12 1.60 8.06 -52.49 -0.42 1.17 16 31 H 0.14 2.73 7.30 -52.49 -0.38 2.34 16 32 H 0.11 2.02 8.06 -52.49 -0.42 1.60 16 33 H 0.10 1.58 8.06 -52.49 -0.42 1.16 16 34 H 0.10 1.58 8.06 -52.49 -0.42 1.16 16 35 H 0.11 2.13 8.06 -52.49 -0.42 1.71 16 36 H 0.13 3.33 6.51 -52.49 -0.34 2.98 16 37 H 0.29 6.18 8.30 -40.82 -0.34 5.85 16 38 H 0.39 5.98 9.06 45.56 0.41 6.39 16 39 H 0.12 1.67 8.06 -52.48 -0.42 1.24 16 LS Contribution 334.55 15.07 5.04 5.04 Total: -1.00 -27.96 334.55 -9.91 -37.87 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: -3.61 Total: 14.19 kcal Atomic # 6 Polarization: -24.36 SS G_CDS: -6.65 Total: -31.01 kcal Atomic # 7 Polarization: -29.48 SS G_CDS: 0.57 Total: -28.91 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: -0.24 Total: -9.50 kcal Atomic # 14 Polarization: 17.34 SS G_CDS: -5.03 Total: 12.32 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -27.96 -9.91 -37.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241036148.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.317 kcal (2) G-P(sol) polarization free energy of solvation -27.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds