Wall clock time and date at job start Tue Mar 31 2020 08:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38501 * 119.81603 * 2 1 4 4 C 1.37868 * 120.27961 * 179.72347 * 3 2 1 5 5 C 1.39620 * 119.90364 * 0.54973 * 4 3 2 6 6 C 1.47782 * 120.17464 * 179.74730 * 5 4 3 7 7 N 1.31632 * 119.45118 * 130.26263 * 6 5 4 8 8 C 1.33654 * 121.74235 * 180.02562 * 7 6 5 9 9 C 1.40475 * 120.98010 * 180.02562 * 8 7 6 10 10 C 1.36244 * 119.70977 * 179.97438 * 9 8 7 11 11 C 1.39165 * 121.74995 * 359.97438 * 10 9 8 12 12 C 1.36133 * 121.46533 * 0.02562 * 11 10 9 13 13 C 1.40785 * 119.47267 * 359.97438 * 12 11 10 14 14 C 1.40025 * 121.40191 * 180.02562 * 13 12 11 15 15 C 1.40365 * 117.97258 * 180.02562 * 14 13 12 16 16 C 1.40823 * 120.40863 * 179.97438 * 15 14 13 17 17 H 1.07998 * 119.99284 * 148.87022 * 16 15 14 18 18 C 1.40087 * 120.00207 * 328.86522 * 16 15 14 19 19 N 1.30763 * 120.00029 * 348.46832 * 18 16 15 20 20 Si 1.86802 * 119.99966 * 168.46382 * 18 16 15 21 21 H 1.48498 * 109.47183 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47182 * 120.00408 * 20 18 16 23 23 H 1.48504 * 109.46605 * 240.00367 * 20 18 16 24 24 C 1.40100 * 119.64192 * 359.47327 * 5 4 3 25 25 O 1.35752 * 120.14280 * 180.27205 * 24 5 4 26 26 C 1.38146 * 119.81338 * 180.02562 * 2 1 3 27 27 H 1.09001 * 109.46965 * 269.98259 * 1 2 3 28 28 H 1.08998 * 109.46984 * 29.97228 * 1 2 3 29 29 H 1.09000 * 109.47332 * 149.98096 * 1 2 3 30 30 H 1.08001 * 119.86205 * 0.02562 * 3 2 1 31 31 H 1.07999 * 120.04375 * 180.30078 * 4 3 2 32 32 H 1.07997 * 120.14720 * 0.25575 * 9 8 7 33 33 H 1.07996 * 119.12493 * 180.02562 * 10 9 8 34 34 H 1.07991 * 119.26998 * 179.97438 * 11 10 9 35 35 H 1.08001 * 120.26124 * 179.97438 * 12 11 10 36 36 H 1.07998 * 121.00994 * 359.95805 * 14 13 12 37 37 H 0.97000 * 120.00640 * 179.97438 * 19 18 16 38 38 H 0.96701 * 114.00166 * 90.00191 * 25 24 5 39 39 H 1.08006 * 119.95828 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2017 0.0000 4 6 3.5743 1.2128 0.0057 5 6 4.2802 0.0082 0.0000 6 6 5.7580 0.0132 0.0005 7 7 6.4074 -0.7297 0.8716 8 6 7.7430 -0.7595 0.9130 9 6 8.4198 -1.5587 1.8493 10 6 9.7820 -1.5699 1.8681 11 6 10.5330 -0.8066 0.9792 12 6 9.9389 -0.0113 0.0478 13 6 8.5338 0.0432 -0.0219 14 6 7.8806 0.8469 -0.9642 15 6 6.4770 0.8471 -0.9695 16 6 5.7678 1.6368 -1.8949 17 1 4.8053 1.3088 -2.2588 18 6 6.3106 2.8480 -2.3432 19 7 7.3558 3.3572 -1.7450 20 14 5.5412 3.7354 -3.7958 21 1 4.3784 2.9566 -4.2923 22 1 5.0887 5.0838 -3.3690 23 1 6.5454 3.8708 -4.8814 24 6 3.5799 -1.2052 -0.0004 25 8 4.2560 -2.3824 -0.0004 26 6 2.1938 -1.1986 -0.0005 27 1 -0.3633 -0.0003 1.0277 28 1 -0.3633 0.8902 -0.5134 29 1 -0.3634 -0.8898 -0.5141 30 1 1.6504 2.1339 0.0004 31 1 4.1074 2.1521 0.0106 32 1 7.8627 -2.1652 2.5480 33 1 10.2926 -2.1881 2.5916 34 1 11.6110 -0.8455 1.0300 35 1 10.5407 0.5733 -0.6323 36 1 8.4399 1.4493 -1.6648 37 1 7.7320 4.1956 -2.0556 38 1 4.4516 -2.7237 0.8830 39 1 1.6501 -2.1318 -0.0014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241036148.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:13:15 Heat of formation + Delta-G solvation = -1.624037 kcal Electronic energy + Delta-G solvation = -23924.027836 eV Core-core repulsion = 20566.739658 eV Total energy + Delta-G solvation = -3357.288178 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.116 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.07652 -40.18891 -37.70562 -37.58697 -35.90244 -33.71601 -33.44347 -31.14977 -30.87648 -30.46485 -27.86597 -27.22328 -24.20211 -23.77208 -23.21616 -22.34593 -21.88982 -19.74094 -18.85337 -18.25593 -17.84965 -17.26264 -16.61267 -16.43901 -16.11090 -15.67734 -15.09032 -15.02598 -14.73826 -14.62712 -14.38375 -14.28128 -13.95264 -13.60522 -13.47407 -13.30490 -12.98472 -12.86926 -12.76322 -12.52112 -12.32464 -12.23704 -12.18183 -11.99925 -11.66290 -11.38822 -11.21415 -10.75780 -10.15819 -9.67385 -9.53164 -9.03097 -8.80974 -8.66041 -6.40672 -0.27380 0.23522 0.45201 0.57362 1.31480 1.35870 1.50499 1.66440 2.12697 2.21291 2.76011 2.92908 3.41071 3.53364 3.68231 3.99401 4.05758 4.08251 4.24385 4.28472 4.43145 4.54131 4.59634 4.61245 4.68018 4.79721 4.84433 4.94123 4.99218 5.07096 5.14790 5.18125 5.30486 5.34540 5.48115 5.55243 5.66142 5.67424 5.72586 5.77838 5.89355 5.96514 6.04681 6.22527 6.46872 6.66089 6.72478 6.89648 7.40602 8.20020 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.010168 B = 0.006763 C = 0.004268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2753.079023 B = 4138.971981 C = 6558.662247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.070 4.070 3 C -0.136 4.136 4 C -0.078 4.078 5 C -0.068 4.068 6 C 0.115 3.885 7 N -0.465 5.465 8 C 0.002 3.998 9 C -0.076 4.076 10 C -0.160 4.160 11 C -0.105 4.105 12 C -0.151 4.151 13 C -0.072 4.072 14 C -0.197 4.197 15 C 0.049 3.951 16 C -0.447 4.447 17 H 0.083 0.917 18 C 0.035 3.965 19 N -0.812 5.812 20 Si 0.980 3.020 21 H -0.255 1.255 22 H -0.259 1.259 23 H -0.265 1.265 24 C 0.113 3.887 25 O -0.504 6.504 26 C -0.154 4.154 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.149 0.851 31 H 0.113 0.887 32 H 0.133 0.867 33 H 0.151 0.849 34 H 0.146 0.854 35 H 0.118 0.882 36 H 0.112 0.888 37 H 0.293 0.707 38 H 0.398 0.602 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.316 -3.381 3.144 8.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.070 4.070 3 C -0.154 4.154 4 C -0.097 4.097 5 C -0.070 4.070 6 C -0.041 4.041 7 N -0.172 5.172 8 C -0.120 4.120 9 C -0.094 4.094 10 C -0.180 4.180 11 C -0.122 4.122 12 C -0.170 4.170 13 C -0.074 4.074 14 C -0.222 4.222 15 C 0.044 3.956 16 C -0.475 4.475 17 H 0.101 0.899 18 C -0.182 4.182 19 N -0.437 5.437 20 Si 0.800 3.200 21 H -0.179 1.179 22 H -0.183 1.183 23 H -0.190 1.190 24 C 0.067 3.933 25 O -0.315 6.315 26 C -0.173 4.173 27 H 0.104 0.896 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.167 0.833 31 H 0.131 0.869 32 H 0.151 0.849 33 H 0.168 0.832 34 H 0.164 0.836 35 H 0.136 0.864 36 H 0.130 0.870 37 H 0.104 0.896 38 H 0.256 0.744 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -7.516 -3.687 3.204 8.964 hybrid contribution 0.949 1.112 -0.809 1.671 sum -6.566 -2.575 2.396 7.449 Atomic orbital electron populations 1.20834 0.87963 1.03956 1.03527 1.20197 0.97959 0.91569 0.97323 1.21205 0.92616 0.99185 1.02389 1.21202 0.94814 0.96528 0.97181 1.18970 0.90210 0.94152 1.03622 1.21389 0.92705 0.96862 0.93098 1.67410 1.08841 1.18828 1.22078 1.19896 0.88764 1.02830 1.00502 1.20790 0.94884 0.97169 0.96572 1.20814 0.93000 1.02559 1.01617 1.20973 1.00821 0.95778 0.94670 1.21066 0.92545 1.02057 1.01358 1.20037 0.95073 0.96315 0.95993 1.21395 0.94059 1.04282 1.02479 1.19579 0.92777 0.91405 0.91838 1.19654 1.04732 1.02993 1.20152 0.89925 1.26810 0.94644 0.97710 0.98988 1.69821 1.19668 1.18024 1.36178 0.85162 0.79360 0.78332 0.77122 1.17861 1.18307 1.18996 1.18737 0.90433 0.84199 0.99900 1.84649 1.77153 1.35323 1.34406 1.21352 0.91722 0.99716 1.04480 0.89623 0.90207 0.90409 0.83321 0.86921 0.84948 0.83165 0.83579 0.86402 0.86965 0.89624 0.74439 0.83381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.87 10.00 71.24 0.71 -1.15 16 2 C -0.07 -1.91 5.88 -19.82 -0.12 -2.03 16 3 C -0.14 -4.22 9.67 22.24 0.22 -4.00 16 4 C -0.08 -3.14 8.09 22.52 0.18 -2.95 16 5 C -0.07 -3.04 5.11 -19.97 -0.10 -3.14 16 6 C 0.12 5.94 6.21 43.92 0.27 6.21 16 7 N -0.46 -23.23 9.56 -169.26 -1.62 -24.85 16 8 C 0.00 0.10 6.74 41.54 0.28 0.38 16 9 C -0.08 -2.99 9.98 22.35 0.22 -2.77 16 10 C -0.16 -5.36 9.90 22.03 0.22 -5.14 16 11 C -0.10 -3.62 9.91 22.00 0.22 -3.40 16 12 C -0.15 -6.42 9.80 22.40 0.22 -6.20 16 13 C -0.07 -3.65 5.87 -20.09 -0.12 -3.76 16 14 C -0.20 -10.81 8.50 23.22 0.20 -10.61 16 15 C 0.05 2.68 5.64 -19.91 -0.11 2.57 16 16 C -0.45 -23.25 7.00 23.35 0.16 -23.09 16 17 H 0.08 4.24 6.90 -2.91 -0.02 4.22 16 18 C 0.04 1.70 5.23 85.30 0.45 2.15 16 19 N -0.81 -41.17 11.07 21.85 0.24 -40.93 16 20 Si 0.98 36.66 29.58 68.60 2.03 38.69 16 21 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 22 H -0.26 -9.10 7.11 99.48 0.71 -8.40 16 23 H -0.27 -9.65 7.11 99.48 0.71 -8.95 16 24 C 0.11 4.39 6.68 22.81 0.15 4.55 16 25 O -0.50 -19.50 12.47 -90.77 -1.13 -20.63 16 26 C -0.15 -4.73 9.62 22.34 0.21 -4.51 16 27 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.08 1.21 8.08 -2.39 -0.02 1.19 16 29 H 0.08 1.18 8.08 -2.39 -0.02 1.16 16 30 H 0.15 3.64 8.06 -2.91 -0.02 3.61 16 31 H 0.11 4.93 7.30 -2.91 -0.02 4.90 16 32 H 0.13 4.59 8.06 -2.91 -0.02 4.57 16 33 H 0.15 3.71 8.06 -2.91 -0.02 3.69 16 34 H 0.15 3.81 8.06 -2.91 -0.02 3.79 16 35 H 0.12 4.67 8.06 -2.91 -0.02 4.65 16 36 H 0.11 6.33 6.51 -2.91 -0.02 6.31 16 37 H 0.29 13.32 8.30 -92.71 -0.77 12.55 16 38 H 0.40 12.64 9.06 -74.06 -0.67 11.97 16 39 H 0.15 3.66 8.06 -2.91 -0.02 3.63 16 Total: -1.00 -66.38 334.55 3.21 -63.18 By element: Atomic # 1 Polarization: 41.03 SS G_CDS: 0.42 Total: 41.45 kcal Atomic # 6 Polarization: -60.17 SS G_CDS: 3.27 Total: -56.91 kcal Atomic # 7 Polarization: -64.40 SS G_CDS: -1.38 Total: -65.78 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: -1.13 Total: -20.63 kcal Atomic # 14 Polarization: 36.66 SS G_CDS: 2.03 Total: 38.69 kcal Total: -66.38 3.21 -63.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241036148.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.551 kcal (2) G-P(sol) polarization free energy of solvation -66.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds