Wall clock time and date at job start Tue Mar 31 2020 08:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38185 * 119.95558 * 2 1 4 4 C 1.38462 * 120.36925 * 179.97438 * 3 2 1 5 5 C 1.37909 * 120.28046 * 0.25517 * 4 3 2 6 6 C 1.39578 * 119.90256 * 359.49575 * 5 4 3 7 7 C 1.47783 * 120.18044 * 180.23287 * 6 5 4 8 8 N 1.31632 * 119.45591 * 130.43970 * 7 6 5 9 9 C 1.33652 * 121.73600 * 179.75757 * 8 7 6 10 10 C 1.40482 * 120.97469 * 180.23762 * 9 8 7 11 11 C 1.36246 * 119.70998 * 180.27047 * 10 9 8 12 12 C 1.39169 * 121.75035 * 0.02562 * 11 10 9 13 13 C 1.36135 * 121.46286 * 359.97438 * 12 11 10 14 14 C 1.40784 * 119.47369 * 0.02562 * 13 12 11 15 15 C 1.40016 * 121.40162 * 179.97438 * 14 13 12 16 16 C 1.40363 * 117.97507 * 180.02562 * 15 14 13 17 17 C 1.40822 * 120.41178 * 179.97438 * 16 15 14 18 18 H 1.08005 * 120.00049 * 148.88571 * 17 16 15 19 19 C 1.40085 * 120.00110 * 328.88032 * 17 16 15 20 20 N 1.30765 * 120.00271 * 348.47079 * 19 17 16 21 21 Si 1.86798 * 120.00194 * 168.46826 * 19 17 16 22 22 H 1.48508 * 109.47169 * 60.00384 * 21 19 17 23 23 H 1.48500 * 109.47379 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47243 * 300.00335 * 21 19 17 25 25 C 1.38559 * 119.95642 * 179.97438 * 2 1 3 26 26 O 1.35762 * 120.14188 * 0.04208 * 25 2 1 27 27 H 1.09004 * 109.46577 * 90.00768 * 1 2 3 28 28 H 1.09000 * 109.46925 * 209.99923 * 1 2 3 29 29 H 1.08994 * 109.47487 * 330.00142 * 1 2 3 30 30 H 1.08003 * 119.82320 * 359.95043 * 3 2 1 31 31 H 1.08005 * 119.86120 * 179.97438 * 4 3 2 32 32 H 1.07999 * 120.04704 * 179.73910 * 5 4 3 33 33 H 1.08007 * 120.14721 * 0.29920 * 10 9 8 34 34 H 1.07993 * 119.12511 * 180.02562 * 11 10 9 35 35 H 1.07991 * 119.26375 * 179.97438 * 12 11 10 36 36 H 1.07999 * 120.25806 * 180.02562 * 13 12 11 37 37 H 1.08003 * 121.01063 * 0.02562 * 15 14 13 38 38 H 0.97008 * 120.00527 * 179.97438 * 20 19 17 39 39 H 0.96701 * 113.99659 * 90.00447 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1971 1.1972 0.0000 4 6 3.5816 1.2072 0.0005 5 6 4.2856 0.0214 -0.0042 6 6 3.6004 -1.1946 0.0010 7 6 4.3486 -2.4690 0.0012 8 7 4.0384 -3.4017 0.8767 9 6 4.6818 -4.5726 0.9144 10 6 4.3342 -5.5587 1.8526 11 6 5.0109 -6.7410 1.8717 12 6 6.0476 -7.0059 0.9817 13 6 6.4335 -6.0931 0.0484 14 6 5.7725 -4.8520 -0.0215 15 6 6.1366 -3.8837 -0.9649 16 6 5.4296 -2.6712 -0.9704 17 6 5.7534 -1.6613 -1.8970 18 1 4.9847 -0.9953 -2.2604 19 6 7.0724 -1.5205 -2.3472 20 7 8.0397 -2.1666 -1.7498 21 14 7.4497 -0.4099 -3.8010 22 1 7.0282 0.9787 -3.4855 23 1 8.9086 -0.4342 -4.0770 24 1 6.7121 -0.8916 -4.9964 25 6 2.1989 -1.2005 0.0005 26 8 1.5222 -2.3774 0.0002 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5138 30 1 1.6534 2.1305 -0.0008 31 1 4.1126 2.1478 0.0001 32 1 5.3655 0.0336 -0.0081 33 1 3.5337 -5.3806 2.5554 34 1 4.7356 -7.4926 2.5966 35 1 6.5571 -7.9567 1.0327 36 1 7.2403 -6.3193 -0.6330 37 1 6.9372 -4.0642 -1.6671 38 1 8.9531 -2.0695 -2.0617 39 1 1.3267 -2.7184 -0.8833 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242345902.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:13:20 Heat of formation + Delta-G solvation = 15.717037 kcal Electronic energy + Delta-G solvation = -24044.049775 eV Core-core repulsion = 20687.513563 eV Total energy + Delta-G solvation = -3356.536213 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.116 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.59280 -38.66022 -36.14629 -35.88494 -34.16345 -32.43995 -31.70535 -30.28990 -29.29800 -28.07480 -26.40115 -25.62252 -23.52915 -21.93824 -21.31759 -20.61775 -20.30463 -17.99030 -17.71421 -16.42861 -16.28026 -15.56422 -15.32921 -14.95295 -14.75492 -14.16815 -13.56412 -13.44653 -13.25088 -12.93172 -12.90404 -12.75495 -12.44561 -12.09218 -11.93632 -11.82477 -11.48453 -11.45168 -11.32857 -11.11005 -10.96083 -10.84540 -10.62687 -10.43573 -10.04586 -9.81965 -9.54742 -9.01269 -8.43205 -8.11918 -8.03861 -7.33417 -7.13331 -6.98409 -4.59413 1.34733 1.79877 1.87738 2.12930 2.87457 2.92133 2.94396 3.43947 3.70633 3.83228 4.17824 4.64425 4.77243 5.11573 5.20170 5.30786 5.52820 5.60546 5.64797 5.68476 5.77141 5.80426 5.93124 6.01577 6.09201 6.16886 6.27357 6.29276 6.41602 6.50471 6.62355 6.76247 6.83950 6.91059 6.95453 7.04015 7.11656 7.26807 7.32120 7.35903 7.41940 7.68471 7.73293 7.89271 8.20694 8.26707 8.44420 8.51211 9.26049 9.88892 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.009437 B = 0.007373 C = 0.004393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2966.247454 B = 3796.706673 C = 6372.129713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.127 4.127 3 C -0.116 4.116 4 C -0.136 4.136 5 C -0.073 4.073 6 C -0.020 4.020 7 C 0.115 3.885 8 N -0.438 5.438 9 C 0.027 3.973 10 C -0.057 4.057 11 C -0.179 4.179 12 C -0.117 4.117 13 C -0.131 4.131 14 C -0.046 4.046 15 C -0.169 4.169 16 C 0.079 3.921 17 C -0.431 4.431 18 H 0.087 0.913 19 C 0.072 3.928 20 N -0.779 5.779 21 Si 0.912 3.088 22 H -0.260 1.260 23 H -0.276 1.276 24 H -0.261 1.261 25 C 0.121 3.879 26 O -0.480 6.480 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.116 0.884 31 H 0.119 0.881 32 H 0.135 0.865 33 H 0.113 0.887 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.111 0.889 37 H 0.129 0.871 38 H 0.287 0.713 39 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.763 2.881 -0.704 6.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.127 4.127 3 C -0.135 4.135 4 C -0.154 4.154 5 C -0.092 4.092 6 C -0.022 4.022 7 C -0.040 4.040 8 N -0.144 5.144 9 C -0.096 4.096 10 C -0.076 4.076 11 C -0.199 4.199 12 C -0.135 4.135 13 C -0.150 4.150 14 C -0.048 4.048 15 C -0.195 4.195 16 C 0.074 3.926 17 C -0.460 4.460 18 H 0.105 0.895 19 C -0.148 4.148 20 N -0.402 5.402 21 Si 0.736 3.264 22 H -0.185 1.185 23 H -0.200 1.200 24 H -0.186 1.186 25 C 0.075 3.925 26 O -0.288 6.288 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.134 0.866 31 H 0.137 0.863 32 H 0.153 0.847 33 H 0.131 0.869 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.129 0.871 37 H 0.147 0.853 38 H 0.098 0.902 39 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -6.110 2.915 0.573 6.794 hybrid contribution 1.137 0.199 -1.728 2.078 sum -4.974 3.114 -1.155 5.981 Atomic orbital electron populations 1.20601 0.91333 1.02585 1.01645 1.20008 0.96122 0.92567 1.04047 1.20814 0.94157 0.96541 1.01939 1.20987 0.93929 0.97897 1.02629 1.21296 1.00861 0.90534 0.96545 1.18870 0.91397 0.92416 0.99480 1.20944 0.97255 0.91854 0.93995 1.67539 1.25317 1.00164 1.21358 1.19368 0.97380 0.93236 0.99586 1.20520 0.98231 0.92314 0.96542 1.20270 0.99830 0.97762 1.02039 1.20477 0.97880 0.98616 0.96570 1.20856 1.00346 0.93981 0.99789 1.19739 0.94767 0.94508 0.95804 1.21437 1.04780 0.91873 1.01382 1.19209 0.89839 0.92715 0.90801 1.19524 0.94237 1.12697 1.19539 0.89477 1.25993 0.95907 0.96026 0.96901 1.69749 1.01604 1.34061 1.34779 0.86270 0.78180 0.80785 0.81214 1.18470 1.20044 1.18556 1.18351 0.88893 0.84775 1.00451 1.84800 1.75826 1.36055 1.32160 0.91960 0.91180 0.92094 0.86557 0.86284 0.84722 0.86891 0.87713 0.87872 0.87143 0.85320 0.90156 0.76709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.32 9.79 36.01 0.35 -0.97 16 2 C -0.13 -2.03 5.89 -104.52 -0.62 -2.65 16 3 C -0.12 -1.73 9.68 -39.52 -0.38 -2.12 16 4 C -0.14 -2.19 10.03 -39.62 -0.40 -2.58 16 5 C -0.07 -1.42 8.07 -39.20 -0.32 -1.73 16 6 C -0.02 -0.43 5.12 -104.78 -0.54 -0.96 16 7 C 0.11 2.76 6.20 -80.62 -0.50 2.26 16 8 N -0.44 -10.78 9.58 -4.85 -0.05 -10.83 16 9 C 0.03 0.65 6.74 -82.94 -0.56 0.09 16 10 C -0.06 -1.20 9.98 -39.45 -0.39 -1.60 16 11 C -0.18 -3.33 9.90 -39.95 -0.40 -3.73 16 12 C -0.12 -2.18 9.91 -39.99 -0.40 -2.58 16 13 C -0.13 -2.73 9.80 -39.38 -0.39 -3.12 16 14 C -0.05 -1.10 5.87 -104.98 -0.62 -1.71 16 15 C -0.17 -4.24 8.50 -38.12 -0.32 -4.56 16 16 C 0.08 1.97 5.64 -104.69 -0.59 1.38 16 17 C -0.43 -10.16 6.97 -37.91 -0.26 -10.43 16 18 H 0.09 1.98 6.89 -52.48 -0.36 1.62 16 19 C 0.07 1.63 5.23 -17.31 -0.09 1.53 16 20 N -0.78 -18.42 11.07 55.55 0.61 -17.80 16 21 Si 0.91 16.98 29.58 -169.99 -5.03 11.96 16 22 H -0.26 -4.76 7.11 56.52 0.40 -4.36 16 23 H -0.28 -5.05 7.11 56.52 0.40 -4.65 16 24 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 25 C 0.12 2.29 6.66 -38.75 -0.26 2.03 16 26 O -0.48 -8.80 11.52 -19.00 -0.22 -9.02 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 0.92 7.53 -51.93 -0.39 0.53 16 29 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 30 H 0.12 1.38 8.06 -52.48 -0.42 0.96 16 31 H 0.12 1.59 8.06 -52.48 -0.42 1.16 16 32 H 0.13 2.74 7.26 -52.49 -0.38 2.36 16 33 H 0.11 2.20 8.06 -52.48 -0.42 1.78 16 34 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 35 H 0.10 1.59 8.06 -52.49 -0.42 1.16 16 36 H 0.11 2.11 8.06 -52.49 -0.42 1.69 16 37 H 0.13 3.26 6.51 -52.48 -0.34 2.92 16 38 H 0.29 6.21 8.30 -40.82 -0.34 5.87 16 39 H 0.38 5.53 9.06 45.56 0.41 5.94 16 LS Contribution 333.17 15.07 5.02 5.02 Total: -1.00 -27.99 333.17 -9.90 -37.89 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: -3.58 Total: 14.23 kcal Atomic # 6 Polarization: -24.78 SS G_CDS: -6.67 Total: -31.45 kcal Atomic # 7 Polarization: -29.20 SS G_CDS: 0.57 Total: -28.63 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: -0.22 Total: -9.02 kcal Atomic # 14 Polarization: 16.98 SS G_CDS: -5.03 Total: 11.96 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -27.99 -9.90 -37.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242345902.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.611 kcal (2) G-P(sol) polarization free energy of solvation -27.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds