Wall clock time and date at job start Tue Mar 31 2020 08:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38185 * 119.95558 * 2 1 4 4 C 1.38462 * 120.36925 * 179.97438 * 3 2 1 5 5 C 1.37909 * 120.28046 * 0.25517 * 4 3 2 6 6 C 1.39578 * 119.90256 * 359.49575 * 5 4 3 7 7 C 1.47783 * 120.18044 * 180.23287 * 6 5 4 8 8 N 1.31632 * 119.45591 * 130.43970 * 7 6 5 9 9 C 1.33652 * 121.73600 * 179.75757 * 8 7 6 10 10 C 1.40482 * 120.97469 * 180.23762 * 9 8 7 11 11 C 1.36246 * 119.70998 * 180.27047 * 10 9 8 12 12 C 1.39169 * 121.75035 * 0.02562 * 11 10 9 13 13 C 1.36135 * 121.46286 * 359.97438 * 12 11 10 14 14 C 1.40784 * 119.47369 * 0.02562 * 13 12 11 15 15 C 1.40016 * 121.40162 * 179.97438 * 14 13 12 16 16 C 1.40363 * 117.97507 * 180.02562 * 15 14 13 17 17 C 1.40822 * 120.41178 * 179.97438 * 16 15 14 18 18 H 1.08005 * 120.00049 * 148.88571 * 17 16 15 19 19 C 1.40085 * 120.00110 * 328.88032 * 17 16 15 20 20 N 1.30765 * 120.00271 * 348.47079 * 19 17 16 21 21 Si 1.86798 * 120.00194 * 168.46826 * 19 17 16 22 22 H 1.48508 * 109.47169 * 60.00384 * 21 19 17 23 23 H 1.48500 * 109.47379 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47243 * 300.00335 * 21 19 17 25 25 C 1.38559 * 119.95642 * 179.97438 * 2 1 3 26 26 O 1.35762 * 120.14188 * 0.04208 * 25 2 1 27 27 H 1.09004 * 109.46577 * 90.00768 * 1 2 3 28 28 H 1.09000 * 109.46925 * 209.99923 * 1 2 3 29 29 H 1.08994 * 109.47487 * 330.00142 * 1 2 3 30 30 H 1.08003 * 119.82320 * 359.95043 * 3 2 1 31 31 H 1.08005 * 119.86120 * 179.97438 * 4 3 2 32 32 H 1.07999 * 120.04704 * 179.73910 * 5 4 3 33 33 H 1.08007 * 120.14721 * 0.29920 * 10 9 8 34 34 H 1.07993 * 119.12511 * 180.02562 * 11 10 9 35 35 H 1.07991 * 119.26375 * 179.97438 * 12 11 10 36 36 H 1.07999 * 120.25806 * 180.02562 * 13 12 11 37 37 H 1.08003 * 121.01063 * 0.02562 * 15 14 13 38 38 H 0.97008 * 120.00527 * 179.97438 * 20 19 17 39 39 H 0.96701 * 113.99659 * 90.00447 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1971 1.1972 0.0000 4 6 3.5816 1.2072 0.0005 5 6 4.2856 0.0214 -0.0042 6 6 3.6004 -1.1946 0.0010 7 6 4.3486 -2.4690 0.0012 8 7 4.0384 -3.4017 0.8767 9 6 4.6818 -4.5726 0.9144 10 6 4.3342 -5.5587 1.8526 11 6 5.0109 -6.7410 1.8717 12 6 6.0476 -7.0059 0.9817 13 6 6.4335 -6.0931 0.0484 14 6 5.7725 -4.8520 -0.0215 15 6 6.1366 -3.8837 -0.9649 16 6 5.4296 -2.6712 -0.9704 17 6 5.7534 -1.6613 -1.8970 18 1 4.9847 -0.9953 -2.2604 19 6 7.0724 -1.5205 -2.3472 20 7 8.0397 -2.1666 -1.7498 21 14 7.4497 -0.4099 -3.8010 22 1 7.0282 0.9787 -3.4855 23 1 8.9086 -0.4342 -4.0770 24 1 6.7121 -0.8916 -4.9964 25 6 2.1989 -1.2005 0.0005 26 8 1.5222 -2.3774 0.0002 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5138 30 1 1.6534 2.1305 -0.0008 31 1 4.1126 2.1478 0.0001 32 1 5.3655 0.0336 -0.0081 33 1 3.5337 -5.3806 2.5554 34 1 4.7356 -7.4926 2.5966 35 1 6.5571 -7.9567 1.0327 36 1 7.2403 -6.3193 -0.6330 37 1 6.9372 -4.0642 -1.6671 38 1 8.9531 -2.0695 -2.0617 39 1 1.3267 -2.7184 -0.8833 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242345902.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:13:19 Heat of formation + Delta-G solvation = 0.729534 kcal Electronic energy + Delta-G solvation = -24044.699682 eV Core-core repulsion = 20687.513563 eV Total energy + Delta-G solvation = -3357.186119 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.116 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.09157 -40.22842 -37.69927 -37.34207 -35.90271 -33.76704 -33.43567 -31.73327 -30.98236 -29.62396 -27.63919 -27.31093 -25.08265 -23.63925 -22.75448 -22.21479 -21.82446 -19.69002 -19.10974 -18.08160 -17.90086 -17.16762 -16.69209 -16.45118 -16.21822 -15.58732 -15.12782 -14.99813 -14.67619 -14.62641 -14.33267 -14.07813 -13.90920 -13.61283 -13.47895 -13.15456 -12.97556 -12.87988 -12.81622 -12.63390 -12.33352 -12.28351 -12.18253 -11.97998 -11.66938 -11.33989 -11.16718 -10.75423 -10.09496 -9.69363 -9.36638 -9.04737 -8.81898 -8.67785 -6.39859 -0.25842 0.24129 0.46346 0.60164 1.35015 1.38346 1.48579 1.68491 2.13226 2.22299 2.78968 2.93905 3.43627 3.55104 3.71887 3.98168 4.01251 4.11296 4.24926 4.33727 4.46664 4.55699 4.59015 4.60787 4.69310 4.74490 4.87539 4.93008 5.01713 5.05226 5.09601 5.20220 5.33199 5.37623 5.54423 5.58045 5.60715 5.70112 5.73136 5.78244 5.90344 5.96252 6.06743 6.22616 6.47142 6.66979 6.72660 6.90983 7.47140 8.20507 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.009437 B = 0.007373 C = 0.004393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2966.247454 B = 3796.706673 C = 6372.129713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.125 4.125 3 C -0.103 4.103 4 C -0.130 4.130 5 C -0.092 4.092 6 C -0.057 4.057 7 C 0.108 3.892 8 N -0.458 5.458 9 C -0.003 4.003 10 C -0.077 4.077 11 C -0.161 4.161 12 C -0.103 4.103 13 C -0.151 4.151 14 C -0.069 4.069 15 C -0.198 4.198 16 C 0.052 3.948 17 C -0.444 4.444 18 H 0.088 0.912 19 C 0.035 3.965 20 N -0.813 5.813 21 Si 0.981 3.019 22 H -0.250 1.250 23 H -0.269 1.269 24 H -0.260 1.260 25 C 0.106 3.894 26 O -0.493 6.493 27 H 0.080 0.920 28 H 0.060 0.940 29 H 0.086 0.914 30 H 0.161 0.839 31 H 0.150 0.850 32 H 0.110 0.890 33 H 0.124 0.876 34 H 0.149 0.851 35 H 0.148 0.852 36 H 0.120 0.880 37 H 0.114 0.886 38 H 0.293 0.707 39 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.137 3.754 -0.548 8.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.125 4.125 3 C -0.121 4.121 4 C -0.148 4.148 5 C -0.111 4.111 6 C -0.059 4.059 7 C -0.048 4.048 8 N -0.164 5.164 9 C -0.125 4.125 10 C -0.095 4.095 11 C -0.181 4.181 12 C -0.121 4.121 13 C -0.170 4.170 14 C -0.071 4.071 15 C -0.223 4.223 16 C 0.048 3.952 17 C -0.473 4.473 18 H 0.106 0.894 19 C -0.182 4.182 20 N -0.437 5.437 21 Si 0.800 3.200 22 H -0.174 1.174 23 H -0.193 1.193 24 H -0.184 1.184 25 C 0.060 3.940 26 O -0.303 6.303 27 H 0.099 0.901 28 H 0.079 0.921 29 H 0.105 0.895 30 H 0.178 0.822 31 H 0.168 0.832 32 H 0.128 0.872 33 H 0.142 0.858 34 H 0.167 0.833 35 H 0.165 0.835 36 H 0.138 0.862 37 H 0.132 0.868 38 H 0.104 0.896 39 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -7.493 3.768 0.740 8.420 hybrid contribution 1.498 -0.167 -1.656 2.239 sum -5.995 3.600 -0.915 7.053 Atomic orbital electron populations 1.20654 0.88559 1.03421 1.03071 1.20424 0.98109 0.91663 1.02322 1.21304 0.93687 0.97825 0.99259 1.21317 0.94818 0.97618 1.01017 1.21206 0.99932 0.91554 0.98433 1.19004 0.92650 0.91700 1.02502 1.21400 0.97136 0.92941 0.93357 1.67601 1.26085 1.00813 1.21923 1.19919 0.97842 0.94052 1.00673 1.20773 0.99417 0.92785 0.96568 1.20786 0.98189 0.97347 1.01747 1.20968 0.97065 0.99455 0.94587 1.21077 1.00985 0.93576 1.01325 1.20038 0.95481 0.95698 0.95887 1.21387 1.05492 0.92982 1.02483 1.19564 0.90726 0.93207 0.91743 1.19638 0.94951 1.12728 1.19974 0.89422 1.26835 0.95183 0.97165 0.99010 1.69824 1.02143 1.35546 1.36212 0.85247 0.78161 0.79087 0.77466 1.17402 1.19287 1.18384 1.18561 0.88238 0.85958 1.01213 1.84748 1.75611 1.36555 1.33367 0.90114 0.92091 0.89503 0.82151 0.83220 0.87153 0.85837 0.83349 0.83471 0.86169 0.86840 0.89624 0.75433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.22 9.79 71.24 0.70 -1.52 16 2 C -0.12 -3.75 5.89 -19.80 -0.12 -3.86 16 3 C -0.10 -2.73 9.68 22.31 0.22 -2.51 16 4 C -0.13 -3.96 10.03 22.25 0.22 -3.73 16 5 C -0.09 -3.68 8.07 22.52 0.18 -3.50 16 6 C -0.06 -2.54 5.12 -19.97 -0.10 -2.64 16 7 C 0.11 5.52 6.20 43.92 0.27 5.80 16 8 N -0.46 -23.87 9.58 -169.25 -1.62 -25.49 16 9 C 0.00 -0.14 6.74 41.54 0.28 0.14 16 10 C -0.08 -3.22 9.98 22.35 0.22 -3.00 16 11 C -0.16 -5.60 9.90 22.03 0.22 -5.38 16 12 C -0.10 -3.60 9.91 22.00 0.22 -3.38 16 13 C -0.15 -6.38 9.80 22.40 0.22 -6.16 16 14 C -0.07 -3.48 5.87 -20.10 -0.12 -3.59 16 15 C -0.20 -10.69 8.50 23.22 0.20 -10.49 16 16 C 0.05 2.81 5.64 -19.91 -0.11 2.70 16 17 C -0.44 -22.28 6.97 23.35 0.16 -22.11 16 18 H 0.09 4.22 6.89 -2.91 -0.02 4.20 16 19 C 0.04 1.65 5.23 85.30 0.45 2.10 16 20 N -0.81 -40.63 11.07 21.85 0.24 -40.39 16 21 Si 0.98 35.46 29.58 68.60 2.03 37.49 16 22 H -0.25 -8.58 7.11 99.48 0.71 -7.87 16 23 H -0.27 -9.30 7.11 99.48 0.71 -8.59 16 24 H -0.26 -9.25 7.11 99.48 0.71 -8.54 16 25 C 0.11 4.07 6.66 22.81 0.15 4.22 16 26 O -0.49 -18.60 11.52 -90.89 -1.05 -19.65 16 27 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 28 H 0.06 1.48 7.53 -2.39 -0.02 1.46 16 29 H 0.09 1.49 8.08 -2.39 -0.02 1.47 16 30 H 0.16 2.90 8.06 -2.91 -0.02 2.87 16 31 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 32 H 0.11 4.84 7.26 -2.91 -0.02 4.82 16 33 H 0.12 4.79 8.06 -2.91 -0.02 4.77 16 34 H 0.15 3.89 8.06 -2.91 -0.02 3.87 16 35 H 0.15 3.87 8.06 -2.92 -0.02 3.85 16 36 H 0.12 4.70 8.06 -2.91 -0.02 4.68 16 37 H 0.11 6.27 6.51 -2.91 -0.02 6.25 16 38 H 0.29 13.25 8.30 -92.70 -0.77 12.48 16 39 H 0.39 11.95 9.06 -74.06 -0.67 11.27 16 Total: -1.00 -66.25 333.17 3.28 -62.97 By element: Atomic # 1 Polarization: 41.61 SS G_CDS: 0.42 Total: 42.03 kcal Atomic # 6 Polarization: -60.21 SS G_CDS: 3.26 Total: -56.95 kcal Atomic # 7 Polarization: -64.50 SS G_CDS: -1.38 Total: -65.88 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: -1.05 Total: -19.65 kcal Atomic # 14 Polarization: 35.46 SS G_CDS: 2.03 Total: 37.49 kcal Total: -66.25 3.28 -62.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242345902.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.695 kcal (2) G-P(sol) polarization free energy of solvation -66.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds