Wall clock time and date at job start Tue Mar 31 2020 08:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38298 * 119.88193 * 2 1 4 4 C 1.37965 * 120.20247 * 179.69738 * 3 2 1 5 5 C 1.39617 * 119.96493 * 0.57855 * 4 3 2 6 6 C 1.47965 * 120.11802 * 179.72233 * 5 4 3 7 7 N 1.31554 * 119.44276 * 136.02923 * 6 5 4 8 8 C 1.33645 * 121.74558 * 180.02562 * 7 6 5 9 9 C 1.40490 * 120.99449 * 179.97438 * 8 7 6 10 10 C 1.36247 * 119.70770 * 180.02562 * 9 8 7 11 11 C 1.39161 * 121.75984 * 359.97438 * 10 9 8 12 12 C 1.36136 * 121.46169 * 0.04773 * 11 10 9 13 13 C 1.40786 * 119.47067 * 359.70089 * 12 11 10 14 14 C 1.40009 * 121.40162 * 179.72743 * 13 12 11 15 15 C 1.40390 * 117.96230 * 180.29775 * 14 13 12 16 16 C 1.40840 * 120.41571 * 180.26995 * 15 14 13 17 17 H 1.07998 * 120.00022 * 151.90027 * 16 15 14 18 18 C 1.40095 * 120.00098 * 331.90217 * 16 15 14 19 19 N 1.30764 * 119.99605 * 346.40390 * 18 16 15 20 20 Si 1.86796 * 120.00236 * 166.40348 * 18 16 15 21 21 H 1.48504 * 109.47189 * 89.99730 * 20 18 16 22 22 H 1.48500 * 109.47261 * 209.99668 * 20 18 16 23 23 H 1.48496 * 109.47189 * 330.00242 * 20 18 16 24 24 C 1.39486 * 119.76833 * 359.44378 * 5 4 3 25 25 C 1.38478 * 119.79475 * 0.27886 * 24 5 4 26 26 O 1.35910 * 119.98201 * 179.97438 * 25 24 5 27 27 H 1.08998 * 109.47308 * 269.97418 * 1 2 3 28 28 H 1.09003 * 109.47192 * 29.98269 * 1 2 3 29 29 H 1.09007 * 109.47118 * 149.98062 * 1 2 3 30 30 H 1.07996 * 119.90179 * 359.97438 * 3 2 1 31 31 H 1.07997 * 120.01746 * 180.31523 * 4 3 2 32 32 H 1.07995 * 120.14135 * 0.04000 * 9 8 7 33 33 H 1.07997 * 119.12303 * 179.97438 * 10 9 8 34 34 H 1.08000 * 119.27087 * 180.02562 * 11 10 9 35 35 H 1.07999 * 120.26213 * 179.97438 * 12 11 10 36 36 H 1.08003 * 121.02116 * 0.56653 * 14 13 12 37 37 H 0.97000 * 119.99666 * 180.02562 * 19 18 16 38 38 H 1.07999 * 120.10454 * 180.30020 * 24 5 4 39 39 H 0.96702 * 113.99647 * 89.99980 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1960 1.1991 0.0000 4 6 3.5756 1.2068 0.0063 5 6 4.2797 0.0013 0.0005 6 6 5.7593 0.0056 0.0010 7 7 6.4082 -0.8209 0.7925 8 6 7.7436 -0.8555 0.8304 9 6 8.4204 -1.7444 1.6822 10 6 9.7827 -1.7571 1.7001 11 6 10.5339 -0.9087 0.8923 12 6 9.9398 -0.0238 0.0453 13 6 8.5348 0.0334 -0.0228 14 6 7.8817 0.9317 -0.8753 15 6 6.4778 0.9319 -0.8808 16 6 5.7682 1.8102 -1.7226 17 1 4.7847 1.5407 -2.0781 18 6 6.3381 3.0335 -2.0987 19 7 7.3942 3.4829 -1.4720 20 14 5.5896 4.0225 -3.4954 21 1 4.5655 4.9503 -2.9517 22 1 6.6542 4.8036 -4.1749 23 1 4.9539 3.0999 -4.4700 24 6 3.5835 -1.2074 0.0001 25 6 2.1987 -1.2038 -0.0004 26 8 1.5165 -2.3793 -0.0014 27 1 -0.3634 -0.0005 1.0276 28 1 -0.3634 0.8902 -0.5136 29 1 -0.3634 -0.8899 -0.5142 30 1 1.6524 2.1323 -0.0004 31 1 4.1106 2.1450 0.0114 32 1 7.8633 -2.4147 2.3198 33 1 10.2933 -2.4439 2.3588 34 1 11.6120 -0.9530 0.9386 35 1 10.5417 0.6259 -0.5728 36 1 8.4408 1.6010 -1.5125 37 1 7.7886 4.3300 -1.7322 38 1 4.1227 -2.1432 0.0005 39 1 1.3187 -2.7199 0.8818 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243229841.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:13:22 Heat of formation + Delta-G solvation = 12.662078 kcal Electronic energy + Delta-G solvation = -23646.449082 eV Core-core repulsion = 20289.780397 eV Total energy + Delta-G solvation = -3356.668686 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.116 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.58970 -38.82245 -36.69585 -35.59996 -34.27809 -32.46054 -31.74365 -29.81924 -29.33441 -28.92933 -26.38395 -25.61839 -22.81496 -22.22672 -21.70474 -20.75348 -20.37580 -18.27071 -17.63623 -16.43926 -16.25448 -15.55187 -15.30046 -14.91805 -14.77140 -14.46789 -13.62181 -13.47348 -13.34893 -13.11659 -12.95258 -12.76700 -12.49895 -12.15927 -11.97085 -11.85221 -11.64799 -11.47458 -11.31913 -11.14911 -10.88267 -10.84271 -10.59825 -10.49524 -10.19541 -9.88810 -9.60548 -9.04653 -8.46135 -8.33570 -8.05455 -7.38430 -7.17071 -7.02837 -4.61190 1.26978 1.79366 1.85325 2.09973 2.83686 2.91397 2.96982 3.38185 3.68118 3.77481 4.18805 4.55408 4.61415 5.07111 5.24306 5.27810 5.45015 5.60206 5.61348 5.65676 5.73792 5.83955 5.96126 5.97442 6.09078 6.15116 6.22807 6.26956 6.36172 6.48921 6.54827 6.72648 6.79550 6.88743 6.95039 6.99558 7.16108 7.24155 7.28007 7.32328 7.37849 7.65216 7.70542 7.86313 7.96972 8.22298 8.40293 8.47285 9.16755 9.82694 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.009983 B = 0.006249 C = 0.003989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2804.163285 B = 4479.773661 C = 7018.389544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.123 4.123 3 C -0.117 4.117 4 C -0.088 4.088 5 C 0.011 3.989 6 C 0.112 3.888 7 N -0.457 5.457 8 C 0.025 3.975 9 C -0.060 4.060 10 C -0.178 4.178 11 C -0.117 4.117 12 C -0.129 4.129 13 C -0.045 4.045 14 C -0.170 4.170 15 C 0.078 3.922 16 C -0.426 4.426 17 H 0.092 0.908 18 C 0.071 3.929 19 N -0.773 5.773 20 Si 0.911 3.089 21 H -0.265 1.265 22 H -0.273 1.273 23 H -0.256 1.256 24 C -0.118 4.118 25 C 0.087 3.913 26 O -0.499 6.499 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.122 0.878 31 H 0.140 0.860 32 H 0.113 0.887 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.111 0.889 36 H 0.132 0.868 37 H 0.288 0.712 38 H 0.126 0.874 39 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.749 -2.223 1.980 6.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.124 4.124 3 C -0.135 4.135 4 C -0.107 4.107 5 C 0.010 3.990 6 C -0.043 4.043 7 N -0.163 5.163 8 C -0.097 4.097 9 C -0.078 4.078 10 C -0.199 4.199 11 C -0.136 4.136 12 C -0.149 4.149 13 C -0.047 4.047 14 C -0.196 4.196 15 C 0.073 3.927 16 C -0.455 4.455 17 H 0.110 0.890 18 C -0.150 4.150 19 N -0.396 5.396 20 Si 0.735 3.265 21 H -0.189 1.189 22 H -0.198 1.198 23 H -0.180 1.180 24 C -0.137 4.137 25 C 0.043 3.957 26 O -0.308 6.308 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.140 0.860 31 H 0.157 0.843 32 H 0.131 0.869 33 H 0.123 0.877 34 H 0.122 0.878 35 H 0.129 0.871 36 H 0.150 0.850 37 H 0.099 0.901 38 H 0.143 0.857 39 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -5.888 -2.569 1.964 6.718 hybrid contribution 0.400 1.040 -0.593 1.262 sum -5.489 -1.529 1.370 5.860 Atomic orbital electron populations 1.20619 0.91455 1.02609 1.01611 1.20125 0.96070 0.92698 1.03462 1.20800 0.94029 0.96709 1.01972 1.21509 0.93307 0.98729 0.97107 1.18319 0.90948 0.92257 0.97516 1.21032 0.91183 0.96631 0.95435 1.67376 1.08694 1.20215 1.20014 1.19297 0.88325 1.00596 1.01515 1.20493 0.93666 0.96801 0.96873 1.20264 0.93714 1.02708 1.03169 1.20483 0.98560 0.97032 0.97488 1.20863 0.93698 0.99900 1.00391 1.19712 0.93328 0.95541 0.96157 1.21495 0.93659 1.01496 1.02911 1.19186 0.92379 0.90598 0.90540 1.19677 1.03238 0.99807 1.22728 0.89022 1.26038 0.94377 0.98132 0.96431 1.69760 1.17371 1.18669 1.33794 0.86216 0.79719 0.79680 0.80909 1.18935 1.19761 1.18002 1.21480 0.92687 0.98513 1.01069 1.18088 0.89489 0.84511 1.03582 1.84797 1.76317 1.36724 1.32945 0.91948 0.91897 0.91379 0.86044 0.84251 0.86946 0.87684 0.87824 0.87073 0.85002 0.90098 0.85653 0.76468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 9.78 36.00 0.35 -0.91 16 2 C -0.12 -1.90 5.90 -104.38 -0.62 -2.51 16 3 C -0.12 -1.89 9.68 -39.66 -0.38 -2.27 16 4 C -0.09 -1.67 7.84 -39.17 -0.31 -1.98 16 5 C 0.01 0.22 5.26 -104.93 -0.55 -0.33 16 6 C 0.11 2.68 6.55 -80.59 -0.53 2.15 16 7 N -0.46 -10.99 10.06 -4.82 -0.05 -11.03 16 8 C 0.03 0.60 6.75 -82.93 -0.56 0.04 16 9 C -0.06 -1.22 9.99 -39.45 -0.39 -1.61 16 10 C -0.18 -3.26 9.90 -39.96 -0.40 -3.65 16 11 C -0.12 -2.16 9.91 -39.99 -0.40 -2.55 16 12 C -0.13 -2.68 9.80 -39.37 -0.39 -3.07 16 13 C -0.04 -1.07 5.87 -104.98 -0.62 -1.69 16 14 C -0.17 -4.25 8.52 -38.11 -0.32 -4.57 16 15 C 0.08 1.94 5.66 -104.69 -0.59 1.35 16 16 C -0.43 -10.05 6.78 -37.90 -0.26 -10.31 16 17 H 0.09 2.10 6.51 -52.49 -0.34 1.76 16 18 C 0.07 1.59 5.21 -17.31 -0.09 1.50 16 19 N -0.77 -18.03 10.97 55.56 0.61 -17.42 16 20 Si 0.91 16.91 29.58 -169.99 -5.03 11.88 16 21 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 22 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 23 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 24 C -0.12 -2.26 9.58 -39.03 -0.37 -2.63 16 25 C 0.09 1.46 6.67 -39.27 -0.26 1.19 16 26 O -0.50 -7.13 12.53 -19.46 -0.24 -7.37 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 29 H 0.07 0.80 7.52 -51.93 -0.39 0.41 16 30 H 0.12 1.64 8.06 -52.49 -0.42 1.21 16 31 H 0.14 2.79 6.78 -52.49 -0.36 2.43 16 32 H 0.11 2.08 8.06 -52.49 -0.42 1.65 16 33 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 34 H 0.10 1.57 8.06 -52.49 -0.42 1.15 16 35 H 0.11 2.11 8.06 -52.49 -0.42 1.68 16 36 H 0.13 3.32 6.35 -52.48 -0.33 2.99 16 37 H 0.29 6.09 8.29 -40.82 -0.34 5.75 16 38 H 0.13 2.43 8.06 -52.49 -0.42 2.01 16 39 H 0.38 3.61 9.06 45.56 0.41 4.02 16 LS Contribution 333.18 15.07 5.02 5.02 Total: -1.00 -27.57 333.18 -9.89 -37.46 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: -3.52 Total: 13.32 kcal Atomic # 6 Polarization: -25.17 SS G_CDS: -6.68 Total: -31.86 kcal Atomic # 7 Polarization: -29.02 SS G_CDS: 0.56 Total: -28.46 kcal Atomic # 8 Polarization: -7.13 SS G_CDS: -0.24 Total: -7.37 kcal Atomic # 14 Polarization: 16.91 SS G_CDS: -5.03 Total: 11.88 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -27.57 -9.89 -37.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243229841.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.126 kcal (2) G-P(sol) polarization free energy of solvation -27.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds