Wall clock time and date at job start Tue Mar 31 2020 08:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36612 * 120.91679 * 2 1 4 4 C 1.39275 * 119.90208 * 179.97438 * 3 2 1 5 5 N 1.31115 * 121.77501 * 0.02562 * 4 3 2 6 6 C 1.33650 * 121.38517 * 359.97438 * 5 4 3 7 7 C 1.40723 * 120.87629 * 179.97438 * 6 5 4 8 8 C 1.35764 * 120.07932 * 180.02562 * 7 6 5 9 9 C 1.40459 * 120.94573 * 359.97438 * 8 7 6 10 10 C 1.48280 * 119.77929 * 180.02562 * 9 8 7 11 11 C 1.39464 * 120.05476 * 180.24703 * 10 9 8 12 12 C 1.37829 * 119.94277 * 180.27936 * 11 10 9 13 13 C 1.39006 * 120.05367 * 359.45198 * 12 11 10 14 14 O 1.35698 * 119.94405 * 180.27996 * 13 12 11 15 15 C 1.34813 * 116.99910 * 354.44755 * 14 13 12 16 16 H 1.08001 * 119.99980 * 5.05978 * 15 14 13 17 17 C 1.38646 * 119.99920 * 185.05740 * 15 14 13 18 18 N 1.31562 * 119.99777 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00112 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47127 * 90.00035 * 19 17 15 21 21 H 1.48496 * 109.47032 * 210.00427 * 19 17 15 22 22 H 1.48500 * 109.46869 * 329.99866 * 19 17 15 23 23 C 1.39012 * 120.10762 * 0.29587 * 13 12 11 24 24 C 1.37815 * 120.05510 * 359.97438 * 23 13 12 25 25 C 1.38303 * 120.44524 * 0.27087 * 9 8 7 26 26 C 1.40246 * 119.41631 * 359.46632 * 25 9 8 27 27 H 1.09006 * 109.47477 * 90.00010 * 1 2 3 28 28 H 1.08998 * 109.47167 * 209.99964 * 1 2 3 29 29 H 1.09002 * 109.47500 * 329.99936 * 1 2 3 30 30 H 1.08000 * 120.04713 * 359.95942 * 3 2 1 31 31 H 1.08000 * 119.11347 * 180.02562 * 4 3 2 32 32 H 1.08005 * 119.96000 * 359.97438 * 7 6 5 33 33 H 1.07994 * 119.52533 * 179.97438 * 8 7 6 34 34 H 1.08004 * 120.02992 * 0.02562 * 11 10 9 35 35 H 1.08000 * 119.96726 * 179.73302 * 12 11 10 36 36 H 0.97001 * 119.99779 * 179.97438 * 18 17 15 37 37 H 1.08002 * 119.96531 * 180.02562 * 23 13 12 38 38 H 1.08006 * 120.03032 * 180.02562 * 24 23 13 39 39 H 1.07995 * 120.28892 * 179.69909 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2089 1.1720 0.0000 4 6 3.6014 1.1474 0.0005 5 7 4.2720 0.0207 0.0006 6 6 3.6476 -1.1610 0.0006 7 6 4.3780 -2.3638 0.0000 8 6 3.7270 -3.5552 -0.0005 9 6 2.3236 -3.6114 0.0001 10 6 1.6392 -4.9269 0.0001 11 6 0.2460 -4.9894 -0.0046 12 6 -0.3877 -6.2133 0.0012 13 6 0.3606 -7.3848 0.0002 14 8 -0.2656 -8.5886 0.0003 15 6 -1.6086 -8.5798 0.1174 16 1 -2.1440 -7.6419 0.1235 17 6 -2.3025 -9.7749 0.2301 18 7 -1.6502 -10.9174 0.2231 19 14 -4.1634 -9.7628 0.3917 20 1 -4.7780 -9.8205 -0.9589 21 1 -4.5990 -10.9405 1.1845 22 1 -4.5925 -8.5179 1.0782 23 6 1.7495 -7.3250 -0.0004 24 6 2.3878 -6.1036 -0.0006 25 6 1.5756 -2.4481 -0.0045 26 6 2.2306 -1.2080 0.0017 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5138 30 1 1.6847 2.1163 -0.0007 31 1 4.1435 2.0814 0.0010 32 1 5.4578 -2.3391 -0.0008 33 1 4.2965 -4.4728 -0.0013 34 1 -0.3359 -4.0795 -0.0087 35 1 -1.4666 -6.2622 0.0019 36 1 -2.1356 -11.7535 0.3023 37 1 2.3286 -8.2366 -0.0016 38 1 3.4669 -6.0576 -0.0015 39 1 0.4967 -2.4943 -0.0090 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243592203.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:11 Heat of formation + Delta-G solvation = 44.699997 kcal Electronic energy + Delta-G solvation = -22686.770133 eV Core-core repulsion = 19331.490716 eV Total energy + Delta-G solvation = -3355.279417 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.116 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.86991 -39.21596 -37.61825 -35.94807 -34.70923 -32.52740 -31.24186 -30.88276 -29.94041 -28.47880 -27.32891 -25.52295 -23.98181 -23.55119 -21.90057 -21.12976 -20.63453 -18.39062 -17.75795 -17.58327 -16.81020 -16.26028 -15.11239 -14.86240 -14.64949 -14.57109 -14.25105 -13.97942 -13.85017 -13.77335 -13.34461 -13.22144 -12.93800 -12.88364 -12.57816 -12.36039 -12.24384 -11.89736 -11.71647 -11.41079 -11.28746 -10.89622 -10.88234 -10.64313 -10.51367 -10.19419 -9.54812 -9.42621 -9.12277 -8.70833 -8.36602 -8.26441 -7.00548 -6.61008 -4.16906 0.34000 0.76791 1.88445 2.10892 2.21138 3.01723 3.05107 3.10220 3.17785 3.84400 4.11408 4.28309 4.47568 4.55530 4.56647 4.75805 4.85315 4.96016 5.07123 5.11193 5.20902 5.25767 5.29183 5.37282 5.40488 5.52568 5.60129 5.70976 5.83766 5.96199 5.98266 6.07299 6.11560 6.21872 6.32910 6.52796 6.56802 6.57358 6.75570 6.85334 6.96814 7.13712 7.23856 7.29173 7.64620 7.83859 7.91521 8.83883 9.51381 10.55978 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.025799 B = 0.002829 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.065467 B = 9893.776687 C =10958.266831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.031 4.031 3 C -0.183 4.183 4 C 0.117 3.883 5 N -0.476 5.476 6 C 0.111 3.889 7 C -0.091 4.091 8 C -0.099 4.099 9 C 0.010 3.990 10 C -0.167 4.167 11 C -0.049 4.049 12 C -0.236 4.236 13 C 0.161 3.839 14 O -0.167 6.167 15 C -0.392 4.392 16 H 0.095 0.905 17 C 0.041 3.959 18 N -0.855 5.855 19 Si 0.944 3.056 20 H -0.272 1.272 21 H -0.276 1.276 22 H -0.266 1.266 23 C -0.193 4.193 24 C -0.054 4.054 25 C -0.127 4.127 26 C -0.084 4.084 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.132 0.868 31 H 0.154 0.846 32 H 0.133 0.867 33 H 0.132 0.868 34 H 0.111 0.889 35 H 0.130 0.870 36 H 0.273 0.727 37 H 0.121 0.879 38 H 0.117 0.883 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.105 19.171 -0.282 19.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.039 4.039 3 C -0.203 4.203 4 C -0.056 4.056 5 N -0.185 5.185 6 C -0.010 4.010 7 C -0.110 4.110 8 C -0.119 4.119 9 C 0.010 3.990 10 C -0.168 4.168 11 C -0.068 4.068 12 C -0.255 4.255 13 C 0.106 3.894 14 O -0.069 6.069 15 C -0.468 4.468 16 H 0.113 0.887 17 C -0.165 4.165 18 N -0.488 5.488 19 Si 0.768 3.232 20 H -0.197 1.197 21 H -0.201 1.201 22 H -0.190 1.190 23 C -0.212 4.212 24 C -0.072 4.072 25 C -0.146 4.146 26 C -0.086 4.086 27 H 0.097 0.903 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.150 0.850 31 H 0.171 0.829 32 H 0.150 0.850 33 H 0.150 0.850 34 H 0.129 0.871 35 H 0.148 0.852 36 H 0.083 0.917 37 H 0.139 0.861 38 H 0.135 0.865 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 6.043 18.532 -0.280 19.495 hybrid contribution -1.852 0.083 0.063 1.855 sum 4.190 18.615 -0.217 19.082 Atomic orbital electron populations 1.20874 0.90201 1.03527 1.03080 1.20172 0.96532 0.92244 0.94911 1.21668 0.95628 0.98508 1.04501 1.22770 0.91454 0.96274 0.95057 1.67948 1.40155 0.97852 1.12497 1.18842 0.89753 0.92256 1.00193 1.20646 1.00026 0.90078 1.00246 1.21033 0.93879 0.97998 0.98958 1.18860 0.92524 0.92678 0.94938 1.18191 0.92961 0.90889 1.14756 1.20811 0.93085 0.96723 0.96134 1.21095 1.00703 0.91826 1.11880 1.19508 0.91989 0.86117 0.91836 1.83952 1.22351 1.24030 1.76540 1.21414 0.78489 0.94844 1.52055 0.88726 1.25359 1.00869 0.94094 0.96182 1.70038 1.36620 0.97669 1.44516 0.85668 0.80130 0.78608 0.78822 1.19704 1.20091 1.19030 1.20159 0.91810 0.97803 1.11415 1.20726 0.98452 0.91073 0.96970 1.21220 0.99860 0.90226 1.03263 1.18623 0.93856 0.93971 1.02123 0.90280 0.90594 0.90902 0.85020 0.82915 0.84956 0.85002 0.87130 0.85207 0.91712 0.86110 0.86492 0.85063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.02 9.59 36.01 0.35 -0.68 16 2 C -0.03 -0.35 5.92 -104.23 -0.62 -0.96 16 3 C -0.18 -1.80 9.72 -39.78 -0.39 -2.19 16 4 C 0.12 1.26 11.14 -17.47 -0.19 1.06 16 5 N -0.48 -6.53 10.33 -10.93 -0.11 -6.64 16 6 C 0.11 1.60 6.61 -84.79 -0.56 1.04 16 7 C -0.09 -1.22 9.95 -39.53 -0.39 -1.61 16 8 C -0.10 -1.34 9.32 -39.63 -0.37 -1.70 16 9 C 0.01 0.15 5.87 -104.91 -0.62 -0.46 16 10 C -0.17 -2.84 5.88 -104.85 -0.62 -3.46 16 11 C -0.05 -0.87 9.41 -39.27 -0.37 -1.24 16 12 C -0.24 -4.86 9.15 -39.45 -0.36 -5.22 16 13 C 0.16 3.71 6.65 -39.01 -0.26 3.45 16 14 O -0.17 -4.56 9.75 0.26 0.00 -4.56 16 15 C -0.39 -10.48 9.48 30.88 0.29 -10.18 16 16 H 0.10 2.32 5.19 -52.49 -0.27 2.04 16 17 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 18 N -0.86 -24.14 13.67 55.48 0.76 -23.39 16 19 Si 0.94 19.62 29.55 -169.99 -5.02 14.59 16 20 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 21 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 22 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 23 C -0.19 -3.87 9.98 -39.45 -0.39 -4.26 16 24 C -0.05 -0.93 9.41 -39.28 -0.37 -1.30 16 25 C -0.13 -1.78 8.71 -38.80 -0.34 -2.12 16 26 C -0.08 -1.15 5.74 -106.82 -0.61 -1.77 16 27 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.08 0.66 6.52 -51.93 -0.34 0.32 16 29 H 0.07 0.49 8.10 -51.93 -0.42 0.07 16 30 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 31 H 0.15 1.13 8.06 -52.49 -0.42 0.71 16 32 H 0.13 1.51 8.06 -52.48 -0.42 1.09 16 33 H 0.13 1.52 6.14 -52.49 -0.32 1.20 16 34 H 0.11 1.63 6.17 -52.48 -0.32 1.30 16 35 H 0.13 2.65 5.62 -52.49 -0.30 2.35 16 36 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 37 H 0.12 2.32 8.06 -52.49 -0.42 1.89 16 38 H 0.12 1.63 6.15 -52.48 -0.32 1.30 16 39 H 0.13 1.65 4.54 -52.49 -0.24 1.41 16 LS Contribution 329.79 15.07 4.97 4.97 Total: -1.00 -30.75 329.79 -9.11 -39.85 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -3.78 Total: 5.80 kcal Atomic # 6 Polarization: -24.72 SS G_CDS: -5.92 Total: -30.63 kcal Atomic # 7 Polarization: -30.68 SS G_CDS: 0.65 Total: -30.03 kcal Atomic # 8 Polarization: -4.56 SS G_CDS: 0.00 Total: -4.56 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.02 Total: 14.59 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.75 -9.11 -39.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243592203.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.555 kcal (2) G-P(sol) polarization free energy of solvation -30.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds