Wall clock time and date at job start Tue Mar 31 2020 08:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36612 * 120.91679 * 2 1 4 4 C 1.39275 * 119.90208 * 179.97438 * 3 2 1 5 5 N 1.31115 * 121.77501 * 0.02562 * 4 3 2 6 6 C 1.33650 * 121.38517 * 359.97438 * 5 4 3 7 7 C 1.40723 * 120.87629 * 179.97438 * 6 5 4 8 8 C 1.35764 * 120.07932 * 180.02562 * 7 6 5 9 9 C 1.40459 * 120.94573 * 359.97438 * 8 7 6 10 10 C 1.48280 * 119.77929 * 180.02562 * 9 8 7 11 11 C 1.39464 * 120.05476 * 180.24703 * 10 9 8 12 12 C 1.37829 * 119.94277 * 180.27936 * 11 10 9 13 13 C 1.39006 * 120.05367 * 359.45198 * 12 11 10 14 14 O 1.35698 * 119.94405 * 180.27996 * 13 12 11 15 15 C 1.34813 * 116.99910 * 354.44755 * 14 13 12 16 16 H 1.08001 * 119.99980 * 5.05978 * 15 14 13 17 17 C 1.38646 * 119.99920 * 185.05740 * 15 14 13 18 18 N 1.31562 * 119.99777 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00112 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47127 * 90.00035 * 19 17 15 21 21 H 1.48496 * 109.47032 * 210.00427 * 19 17 15 22 22 H 1.48500 * 109.46869 * 329.99866 * 19 17 15 23 23 C 1.39012 * 120.10762 * 0.29587 * 13 12 11 24 24 C 1.37815 * 120.05510 * 359.97438 * 23 13 12 25 25 C 1.38303 * 120.44524 * 0.27087 * 9 8 7 26 26 C 1.40246 * 119.41631 * 359.46632 * 25 9 8 27 27 H 1.09006 * 109.47477 * 90.00010 * 1 2 3 28 28 H 1.08998 * 109.47167 * 209.99964 * 1 2 3 29 29 H 1.09002 * 109.47500 * 329.99936 * 1 2 3 30 30 H 1.08000 * 120.04713 * 359.95942 * 3 2 1 31 31 H 1.08000 * 119.11347 * 180.02562 * 4 3 2 32 32 H 1.08005 * 119.96000 * 359.97438 * 7 6 5 33 33 H 1.07994 * 119.52533 * 179.97438 * 8 7 6 34 34 H 1.08004 * 120.02992 * 0.02562 * 11 10 9 35 35 H 1.08000 * 119.96726 * 179.73302 * 12 11 10 36 36 H 0.97001 * 119.99779 * 179.97438 * 18 17 15 37 37 H 1.08002 * 119.96531 * 180.02562 * 23 13 12 38 38 H 1.08006 * 120.03032 * 180.02562 * 24 23 13 39 39 H 1.07995 * 120.28892 * 179.69909 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2089 1.1720 0.0000 4 6 3.6014 1.1474 0.0005 5 7 4.2720 0.0207 0.0006 6 6 3.6476 -1.1610 0.0006 7 6 4.3780 -2.3638 0.0000 8 6 3.7270 -3.5552 -0.0005 9 6 2.3236 -3.6114 0.0001 10 6 1.6392 -4.9269 0.0001 11 6 0.2460 -4.9894 -0.0046 12 6 -0.3877 -6.2133 0.0012 13 6 0.3606 -7.3848 0.0002 14 8 -0.2656 -8.5886 0.0003 15 6 -1.6086 -8.5798 0.1174 16 1 -2.1440 -7.6419 0.1235 17 6 -2.3025 -9.7749 0.2301 18 7 -1.6502 -10.9174 0.2231 19 14 -4.1634 -9.7628 0.3917 20 1 -4.7780 -9.8205 -0.9589 21 1 -4.5990 -10.9405 1.1845 22 1 -4.5925 -8.5179 1.0782 23 6 1.7495 -7.3250 -0.0004 24 6 2.3878 -6.1036 -0.0006 25 6 1.5756 -2.4481 -0.0045 26 6 2.2306 -1.2080 0.0017 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5138 30 1 1.6847 2.1163 -0.0007 31 1 4.1435 2.0814 0.0010 32 1 5.4578 -2.3391 -0.0008 33 1 4.2965 -4.4728 -0.0013 34 1 -0.3359 -4.0795 -0.0087 35 1 -1.4666 -6.2622 0.0019 36 1 -2.1356 -11.7535 0.3023 37 1 2.3286 -8.2366 -0.0016 38 1 3.4669 -6.0576 -0.0015 39 1 0.4967 -2.4943 -0.0090 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243592203.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:10 Heat of formation + Delta-G solvation = 28.248557 kcal Electronic energy + Delta-G solvation = -22687.483521 eV Core-core repulsion = 19331.490716 eV Total energy + Delta-G solvation = -3355.992805 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.116 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.84714 -40.79627 -38.97516 -37.27761 -35.58738 -34.35719 -32.51671 -32.18553 -31.12907 -29.55858 -28.39955 -27.31241 -25.10135 -24.70109 -23.22780 -22.48227 -21.73776 -19.98951 -19.11527 -18.83863 -18.10334 -17.28097 -16.45851 -16.27524 -16.02741 -15.64934 -15.60089 -15.50915 -15.13241 -14.99407 -14.47050 -14.28871 -14.04445 -13.96198 -13.66523 -13.56336 -13.52939 -13.38596 -12.86573 -12.81262 -12.55850 -12.26602 -12.19799 -12.10986 -11.99292 -11.18216 -11.09029 -10.85646 -10.40876 -9.93914 -9.87575 -9.34721 -8.50718 -8.45639 -6.16654 -0.65618 -0.23343 0.56151 0.65193 1.10576 1.35696 1.44444 1.53125 2.05306 2.16430 2.83382 3.09168 3.29020 3.39277 3.43945 3.59683 3.71367 3.74018 3.87284 4.06261 4.08230 4.18253 4.24097 4.38961 4.51138 4.52455 4.59579 4.70512 4.76190 4.84743 4.91038 4.99418 5.03995 5.11739 5.16694 5.21872 5.24382 5.34807 5.42264 5.56689 5.64763 5.66282 5.83002 5.93574 5.99237 6.11830 6.94470 7.00038 7.72811 8.72634 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.025799 B = 0.002829 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.065467 B = 9893.776687 C =10958.266831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.036 4.036 3 C -0.179 4.179 4 C 0.123 3.877 5 N -0.508 5.508 6 C 0.096 3.904 7 C -0.100 4.100 8 C -0.099 4.099 9 C -0.022 4.022 10 C -0.139 4.139 11 C -0.054 4.054 12 C -0.240 4.240 13 C 0.122 3.878 14 O -0.225 6.225 15 C -0.415 4.415 16 H 0.105 0.895 17 C -0.021 4.021 18 N -0.918 5.918 19 Si 1.019 2.981 20 H -0.263 1.263 21 H -0.272 1.272 22 H -0.251 1.251 23 C -0.201 4.201 24 C -0.052 4.052 25 C -0.111 4.111 26 C -0.110 4.110 27 H 0.089 0.911 28 H 0.072 0.928 29 H 0.095 0.905 30 H 0.170 0.830 31 H 0.188 0.812 32 H 0.146 0.854 33 H 0.149 0.851 34 H 0.144 0.856 35 H 0.126 0.874 36 H 0.274 0.726 37 H 0.120 0.880 38 H 0.154 0.846 39 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.193 24.087 -0.227 24.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.044 4.044 3 C -0.198 4.198 4 C -0.048 4.048 5 N -0.217 5.217 6 C -0.024 4.024 7 C -0.118 4.118 8 C -0.118 4.118 9 C -0.022 4.022 10 C -0.140 4.140 11 C -0.071 4.071 12 C -0.259 4.259 13 C 0.070 3.930 14 O -0.131 6.131 15 C -0.490 4.490 16 H 0.123 0.877 17 C -0.219 4.219 18 N -0.555 5.555 19 Si 0.838 3.162 20 H -0.188 1.188 21 H -0.197 1.197 22 H -0.175 1.175 23 C -0.221 4.221 24 C -0.070 4.070 25 C -0.130 4.130 26 C -0.112 4.112 27 H 0.107 0.893 28 H 0.091 0.909 29 H 0.114 0.886 30 H 0.187 0.813 31 H 0.205 0.795 32 H 0.164 0.836 33 H 0.167 0.833 34 H 0.162 0.838 35 H 0.143 0.857 36 H 0.083 0.917 37 H 0.138 0.862 38 H 0.172 0.828 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 6.168 23.518 -0.229 24.315 hybrid contribution -1.510 -0.747 0.029 1.685 sum 4.658 22.771 -0.200 23.244 Atomic orbital electron populations 1.20965 0.88228 1.04551 1.03986 1.20573 0.98060 0.91810 0.93913 1.22103 0.95370 0.99650 1.02705 1.23508 0.92470 0.96699 0.92169 1.68017 1.40921 0.98386 1.14415 1.19166 0.90363 0.93004 0.99876 1.20847 1.00841 0.89888 1.00224 1.21161 0.93317 0.98888 0.98465 1.18797 0.93367 0.91721 0.98352 1.18557 0.92893 0.92033 1.10476 1.21131 0.93802 0.96721 0.95477 1.21198 1.00612 0.92281 1.11845 1.20051 0.93317 0.86101 0.93493 1.83931 1.22681 1.26101 1.80337 1.21873 0.79009 0.95624 1.52543 0.87738 1.26613 1.06219 0.93404 0.95697 1.70183 1.38765 0.98438 1.48137 0.84582 0.73375 0.79088 0.79175 1.18771 1.19686 1.17460 1.20407 0.90985 0.99249 1.11411 1.21106 1.00373 0.89843 0.95629 1.21447 1.00528 0.90186 1.00813 1.18858 0.94054 0.94858 1.03463 0.89288 0.90944 0.88609 0.81263 0.79531 0.83581 0.83350 0.83831 0.85653 0.91721 0.86190 0.82839 0.83789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.55 9.59 71.24 0.68 -0.86 16 2 C -0.04 -0.66 5.92 -19.61 -0.12 -0.78 16 3 C -0.18 -2.67 9.72 22.14 0.22 -2.46 16 4 C 0.12 2.15 11.14 85.05 0.95 3.10 16 5 N -0.51 -12.50 10.33 -188.50 -1.95 -14.45 16 6 C 0.10 2.55 6.61 40.35 0.27 2.81 16 7 C -0.10 -2.44 9.95 22.30 0.22 -2.22 16 8 C -0.10 -2.43 9.32 22.24 0.21 -2.23 16 9 C -0.02 -0.62 5.87 -20.05 -0.12 -0.74 16 10 C -0.14 -4.47 5.88 -20.02 -0.12 -4.59 16 11 C -0.05 -1.82 9.41 22.47 0.21 -1.61 16 12 C -0.24 -10.11 9.15 22.36 0.20 -9.91 16 13 C 0.12 5.90 6.65 22.64 0.15 6.05 16 14 O -0.22 -13.21 9.75 -21.99 -0.21 -13.42 16 15 C -0.41 -23.53 9.48 67.92 0.64 -22.88 16 16 H 0.11 5.39 5.19 -2.91 -0.02 5.37 16 17 C -0.02 -1.18 5.49 84.83 0.47 -0.72 16 18 N -0.92 -55.37 13.67 21.61 0.30 -55.07 16 19 Si 1.02 41.69 29.55 68.60 2.03 43.72 16 20 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 21 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 22 H -0.25 -9.47 7.11 99.48 0.71 -8.77 16 23 C -0.20 -8.33 9.98 22.36 0.22 -8.11 16 24 C -0.05 -1.72 9.41 22.46 0.21 -1.51 16 25 C -0.11 -2.81 8.71 22.77 0.20 -2.61 16 26 C -0.11 -2.72 5.74 -21.29 -0.12 -2.84 16 27 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 28 H 0.07 0.99 6.52 -2.39 -0.02 0.97 16 29 H 0.10 0.80 8.10 -2.39 -0.02 0.78 16 30 H 0.17 1.24 8.06 -2.91 -0.02 1.21 16 31 H 0.19 1.83 8.06 -2.91 -0.02 1.81 16 32 H 0.15 3.05 8.06 -2.91 -0.02 3.02 16 33 H 0.15 3.01 6.14 -2.91 -0.02 2.99 16 34 H 0.14 3.84 6.17 -2.91 -0.02 3.82 16 35 H 0.13 5.28 5.62 -2.91 -0.02 5.27 16 36 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 37 H 0.12 4.85 8.06 -2.91 -0.02 4.83 16 38 H 0.15 3.89 6.15 -2.91 -0.02 3.87 16 39 H 0.14 3.13 4.54 -2.91 -0.01 3.12 16 Total: -1.00 -72.93 329.79 5.64 -67.28 By element: Atomic # 1 Polarization: 22.93 SS G_CDS: 1.10 Total: 24.03 kcal Atomic # 6 Polarization: -56.47 SS G_CDS: 4.38 Total: -52.09 kcal Atomic # 7 Polarization: -67.87 SS G_CDS: -1.65 Total: -69.52 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: -0.21 Total: -13.42 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Total: -72.93 5.64 -67.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243592203.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.533 kcal (2) G-P(sol) polarization free energy of solvation -72.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds