Wall clock time and date at job start Tue Mar 31 2020 08:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36178 * 120.05087 * 2 1 4 4 C 1.40104 * 120.10696 * 180.27190 * 3 2 1 5 5 C 1.47597 * 119.89735 * 179.71754 * 4 3 2 6 6 C 1.38890 * 120.38914 * 309.72852 * 5 4 3 7 7 C 1.38793 * 120.51064 * 180.02562 * 6 5 4 8 8 C 1.36372 * 121.23004 * 0.02562 * 7 6 5 9 9 C 1.40607 * 120.22939 * 359.97438 * 8 7 6 10 10 N 1.33815 * 120.87385 * 179.72217 * 9 8 7 11 11 C 1.31572 * 121.26862 * 179.72151 * 10 9 8 12 12 O 1.35579 * 119.22483 * 180.27000 * 11 10 9 13 13 C 1.39962 * 121.54732 * 0.57167 * 11 10 9 14 14 C 1.36496 * 119.82945 * 359.71652 * 13 11 10 15 15 C 1.40530 * 118.28466 * 359.97438 * 14 13 11 16 16 C 1.40151 * 120.20533 * 359.44690 * 4 3 2 17 17 C 1.36141 * 120.10448 * 0.29406 * 16 4 3 18 18 C 1.40974 * 120.05568 * 179.74358 * 2 1 3 19 19 C 1.40914 * 120.10275 * 0.02562 * 18 2 1 20 20 H 1.07999 * 120.00066 * 333.68190 * 19 18 2 21 21 C 1.40023 * 119.99567 * 153.67457 * 19 18 2 22 22 N 1.30786 * 120.00219 * 343.38235 * 21 19 18 23 23 Si 1.86803 * 119.99764 * 163.38154 * 21 19 18 24 24 H 1.48507 * 109.47076 * 60.00256 * 23 21 19 25 25 H 1.48504 * 109.47138 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47201 * 299.99915 * 23 21 19 27 27 H 1.08997 * 109.47209 * 270.25397 * 1 2 3 28 28 H 1.09004 * 109.47427 * 30.26156 * 1 2 3 29 29 H 1.09002 * 109.46758 * 150.25528 * 1 2 3 30 30 H 1.08001 * 119.94917 * 0.02562 * 3 2 1 31 31 H 1.07999 * 119.74728 * 0.02562 * 6 5 4 32 32 H 1.08001 * 119.38556 * 180.02562 * 7 6 5 33 33 H 1.07995 * 119.88597 * 179.97438 * 8 7 6 34 34 H 0.96696 * 113.99705 * 270.29637 * 12 11 10 35 35 H 1.08000 * 120.08157 * 179.73677 * 13 11 10 36 36 H 1.08004 * 120.86246 * 179.97438 * 14 13 11 37 37 H 1.08003 * 119.94450 * 180.27096 * 16 4 3 38 38 H 1.08005 * 120.04819 * 179.97438 * 17 16 4 39 39 H 0.97007 * 119.99452 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1889 1.1787 0.0000 4 6 3.5900 1.1801 -0.0058 5 6 4.3244 2.4604 -0.0120 6 6 4.0060 3.4485 -0.9347 7 6 4.6953 4.6531 -0.9432 8 6 5.6984 4.9001 -0.0529 9 6 6.0549 3.9287 0.8992 10 7 7.0408 4.1553 1.7752 11 6 7.3772 3.2540 2.6728 12 8 8.3789 3.5293 3.5440 13 6 6.7295 2.0155 2.7454 14 6 5.7196 1.7253 1.8741 15 6 5.3618 2.6955 0.9225 16 6 4.2963 -0.0304 0.0002 17 6 3.6232 -1.2137 0.0055 18 6 2.2131 -1.2202 0.0055 19 6 1.5119 -2.4425 0.0104 20 1 0.5158 -2.4919 0.4249 21 6 2.1065 -3.5928 -0.5223 22 7 3.1494 -3.4875 -1.3044 23 14 1.4103 -5.2778 -0.1157 24 1 0.0010 -5.3558 -0.5776 25 1 2.2140 -6.3235 -0.7984 26 1 1.4626 -5.4940 1.3526 27 1 -0.3633 0.0046 1.0276 28 1 -0.3634 0.8876 -0.5179 29 1 -0.3633 -0.8923 -0.5099 30 1 1.6489 2.1141 0.0004 31 1 3.2159 3.2782 -1.6511 32 1 4.4324 5.4090 -1.6684 33 1 6.2207 5.8449 -0.0792 34 1 9.2558 3.2693 3.2299 35 1 7.0277 1.2914 3.4891 36 1 5.2087 0.7746 1.9150 37 1 5.3763 -0.0244 0.0001 38 1 4.1684 -2.1461 0.0096 39 1 3.5616 -4.2846 -1.6731 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244318483.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:07:10 Heat of formation + Delta-G solvation = 20.579526 kcal Electronic energy + Delta-G solvation = -23400.917969 eV Core-core repulsion = 20044.592610 eV Total energy + Delta-G solvation = -3356.325359 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.116 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.67588 -38.46815 -37.61191 -35.60100 -34.29064 -33.24128 -31.55145 -30.50040 -29.57940 -28.62441 -26.31550 -25.01556 -23.83832 -23.19706 -22.00444 -20.45893 -19.52805 -18.85200 -17.61136 -17.32680 -16.81761 -15.93878 -15.50911 -14.83645 -14.50167 -14.40501 -14.04278 -13.90502 -13.41862 -13.11525 -13.05484 -12.71318 -12.68097 -12.01386 -11.88519 -11.78178 -11.49288 -11.42842 -11.33339 -11.29910 -10.99481 -10.94373 -10.71874 -10.52666 -10.14671 -9.78973 -9.57436 -9.34554 -9.18686 -8.43788 -8.02308 -7.57593 -7.19618 -6.97090 -4.53914 0.61630 1.03082 2.11637 2.64634 2.91056 2.94313 2.95377 3.00228 3.17258 3.72344 3.74951 4.29833 4.46039 4.79188 4.95656 5.12298 5.21402 5.34613 5.42067 5.51699 5.64367 5.70178 6.06031 6.08256 6.14320 6.19153 6.25116 6.29590 6.38489 6.55890 6.56666 6.66547 6.72006 6.79905 6.86910 6.91368 7.06460 7.15714 7.21989 7.46326 7.53105 7.71073 7.85367 7.89349 8.07097 8.07854 8.39429 8.64693 8.75406 9.92364 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.018546 B = 0.003809 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.432145 B = 7350.046728 C = 8299.495158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.201 4.201 3 C -0.055 4.055 4 C -0.212 4.212 5 C 0.054 3.946 6 C -0.151 4.151 7 C -0.076 4.076 8 C -0.139 4.139 9 C 0.157 3.843 10 N -0.507 5.507 11 C 0.336 3.664 12 O -0.487 6.487 13 C -0.210 4.210 14 C -0.020 4.020 15 C -0.116 4.116 16 C -0.080 4.080 17 C -0.167 4.167 18 C 0.124 3.876 19 C -0.445 4.445 20 H 0.084 0.916 21 C 0.075 3.925 22 N -0.778 5.778 23 Si 0.910 3.090 24 H -0.263 1.263 25 H -0.277 1.277 26 H -0.261 1.261 27 H 0.042 0.958 28 H 0.039 0.961 29 H 0.061 0.939 30 H 0.091 0.909 31 H 0.125 0.875 32 H 0.123 0.877 33 H 0.126 0.874 34 H 0.398 0.602 35 H 0.138 0.862 36 H 0.154 0.846 37 H 0.089 0.911 38 H 0.118 0.882 39 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.305 6.099 2.210 7.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.202 4.202 3 C -0.073 4.073 4 C -0.213 4.213 5 C 0.053 3.947 6 C -0.169 4.169 7 C -0.096 4.096 8 C -0.158 4.158 9 C 0.036 3.964 10 N -0.227 5.227 11 C 0.142 3.858 12 O -0.294 6.294 13 C -0.231 4.231 14 C -0.046 4.046 15 C -0.118 4.118 16 C -0.099 4.099 17 C -0.187 4.187 18 C 0.122 3.878 19 C -0.473 4.473 20 H 0.102 0.898 21 C -0.145 4.145 22 N -0.402 5.402 23 Si 0.734 3.266 24 H -0.187 1.187 25 H -0.201 1.201 26 H -0.186 1.186 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.080 0.920 30 H 0.109 0.891 31 H 0.143 0.857 32 H 0.141 0.859 33 H 0.144 0.856 34 H 0.255 0.745 35 H 0.156 0.844 36 H 0.171 0.829 37 H 0.107 0.893 38 H 0.136 0.864 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.444 6.980 2.336 8.598 hybrid contribution -0.111 -1.692 -0.124 1.700 sum 4.333 5.288 2.212 7.185 Atomic orbital electron populations 1.20415 0.93340 1.00737 0.99776 1.19436 0.94544 0.92937 1.13289 1.20196 0.92226 0.96187 0.98687 1.17931 0.92532 0.90027 1.20842 1.19049 0.91171 0.93672 0.90779 1.21309 1.01960 0.93727 0.99932 1.20757 0.94621 0.96770 0.97423 1.20549 0.99888 0.98926 0.96431 1.18434 0.91546 0.92692 0.93736 1.67467 1.17133 1.33318 1.04768 1.19318 0.90331 0.88488 0.87634 1.84727 1.17972 1.85970 1.40688 1.21785 1.00921 0.97443 1.02935 1.21766 0.93022 0.99124 0.90641 1.18954 0.99145 0.95186 0.98476 1.20470 0.97070 0.92245 1.00072 1.20959 0.94492 0.96508 1.06698 1.17571 0.91833 0.91684 0.86758 1.19663 1.02113 0.92463 1.33023 0.89772 1.26027 0.94143 1.01777 0.92601 1.69794 1.17669 1.32357 1.20376 0.86321 0.80019 0.80171 0.80102 1.18744 1.20135 1.18581 0.93943 0.94218 0.91976 0.89072 0.85662 0.85876 0.85576 0.74479 0.84421 0.82866 0.89283 0.86374 0.90359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.65 9.39 36.01 0.34 -1.32 16 2 C -0.20 -4.47 5.90 -104.33 -0.62 -5.09 16 3 C -0.05 -1.15 9.08 -39.62 -0.36 -1.50 16 4 C -0.21 -4.38 5.08 -104.66 -0.53 -4.91 16 5 C 0.05 1.01 5.49 -104.56 -0.57 0.43 16 6 C -0.15 -2.48 9.49 -39.13 -0.37 -2.85 16 7 C -0.08 -1.08 9.92 -40.05 -0.40 -1.48 16 8 C -0.14 -2.13 9.96 -39.36 -0.39 -2.52 16 9 C 0.16 2.74 6.60 -84.87 -0.56 2.18 16 10 N -0.51 -8.75 10.37 -11.07 -0.11 -8.87 16 11 C 0.34 5.18 7.72 -17.02 -0.13 5.05 16 12 O -0.49 -6.17 13.55 -18.43 -0.25 -6.42 16 13 C -0.21 -3.09 9.96 -39.56 -0.39 -3.49 16 14 C -0.02 -0.34 8.64 -39.35 -0.34 -0.68 16 15 C -0.12 -2.08 5.74 -106.52 -0.61 -2.69 16 16 C -0.08 -1.72 7.53 -39.62 -0.30 -2.02 16 17 C -0.17 -3.97 8.61 -39.29 -0.34 -4.31 16 18 C 0.12 3.02 5.56 -106.80 -0.59 2.42 16 19 C -0.44 -10.66 8.09 -37.90 -0.31 -10.97 16 20 H 0.08 1.93 6.88 -52.49 -0.36 1.57 16 21 C 0.07 1.71 5.14 -17.33 -0.09 1.62 16 22 N -0.78 -18.51 10.99 55.55 0.61 -17.90 16 23 Si 0.91 17.12 29.59 -169.99 -5.03 12.09 16 24 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 25 H -0.28 -5.10 7.11 56.52 0.40 -4.70 16 26 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 27 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.04 0.68 8.08 -51.93 -0.42 0.26 16 29 H 0.06 1.22 6.77 -51.93 -0.35 0.87 16 30 H 0.09 1.73 8.04 -52.49 -0.42 1.31 16 31 H 0.13 1.94 8.03 -52.49 -0.42 1.52 16 32 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 33 H 0.13 1.70 8.06 -52.49 -0.42 1.27 16 34 H 0.40 2.90 9.06 45.56 0.41 3.31 16 35 H 0.14 1.66 8.06 -52.49 -0.42 1.24 16 36 H 0.15 2.61 5.66 -52.48 -0.30 2.32 16 37 H 0.09 1.78 7.24 -52.48 -0.38 1.40 16 38 H 0.12 2.89 6.23 -52.48 -0.33 2.57 16 39 H 0.29 6.18 8.30 -40.82 -0.34 5.85 16 LS Contribution 330.31 15.07 4.98 4.98 Total: -1.00 -27.46 330.31 -9.76 -37.22 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -3.39 Total: 11.02 kcal Atomic # 6 Polarization: -25.57 SS G_CDS: -6.57 Total: -32.14 kcal Atomic # 7 Polarization: -27.26 SS G_CDS: 0.50 Total: -26.76 kcal Atomic # 8 Polarization: -6.17 SS G_CDS: -0.25 Total: -6.42 kcal Atomic # 14 Polarization: 17.12 SS G_CDS: -5.03 Total: 12.09 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -27.46 -9.76 -37.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244318483.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.801 kcal (2) G-P(sol) polarization free energy of solvation -27.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds