Wall clock time and date at job start Tue Mar 31 2020 08:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36207 * 120.05961 * 2 1 4 4 C 1.40030 * 120.11634 * 180.02562 * 3 2 1 5 5 C 1.47780 * 119.88817 * 179.97438 * 4 3 2 6 6 C 1.39818 * 120.00081 * 359.72553 * 5 4 3 7 7 C 1.36579 * 119.99950 * 179.72457 * 6 5 4 8 8 C 1.39833 * 119.99610 * 0.54553 * 7 6 5 9 9 C 1.47601 * 119.99846 * 179.70083 * 8 7 6 10 10 N 1.31334 * 125.72950 * 179.71167 * 9 8 7 11 11 C 1.34054 * 108.65331 * 179.87529 * 10 9 8 12 12 C 1.34685 * 107.84638 * 0.39210 * 11 10 9 13 13 O 1.34472 * 125.73011 * 0.02562 * 9 8 7 14 14 C 1.39822 * 120.00121 * 359.72350 * 8 7 6 15 15 C 1.36578 * 119.99791 * 0.02562 * 14 8 7 16 16 C 1.40066 * 120.21549 * 359.97438 * 4 3 2 17 17 C 1.36166 * 120.11717 * 359.69563 * 16 4 3 18 18 C 1.40950 * 120.05577 * 179.97438 * 2 1 3 19 19 C 1.40952 * 120.11196 * 359.97438 * 18 2 1 20 20 H 1.08000 * 120.00158 * 334.48727 * 19 18 2 21 21 C 1.40003 * 120.00252 * 154.48069 * 19 18 2 22 22 N 1.30804 * 119.99646 * 334.59513 * 21 19 18 23 23 Si 1.86800 * 119.99893 * 154.59649 * 21 19 18 24 24 H 1.48501 * 109.46517 * 180.02562 * 23 21 19 25 25 H 1.48496 * 109.47026 * 299.99890 * 23 21 19 26 26 H 1.48493 * 109.47159 * 60.00141 * 23 21 19 27 27 H 1.08995 * 109.47172 * 270.02594 * 1 2 3 28 28 H 1.09001 * 109.46695 * 30.02291 * 1 2 3 29 29 H 1.08999 * 109.46938 * 150.02323 * 1 2 3 30 30 H 1.08004 * 119.94171 * 359.97148 * 3 2 1 31 31 H 1.07995 * 120.00200 * 359.97438 * 6 5 4 32 32 H 1.08000 * 120.00405 * 180.27881 * 7 6 5 33 33 H 1.07996 * 126.07720 * 180.16029 * 11 10 9 34 34 H 1.07994 * 126.35693 * 179.79977 * 12 11 10 35 35 H 1.07996 * 120.00083 * 179.97438 * 14 8 7 36 36 H 1.08000 * 120.00284 * 179.97438 * 15 14 8 37 37 H 1.08005 * 119.93459 * 180.02562 * 16 4 3 38 38 H 1.08003 * 120.05853 * 180.29557 * 17 16 4 39 39 H 0.96991 * 120.00045 * 354.16269 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1893 1.1789 0.0000 4 6 3.5896 1.1803 -0.0005 5 6 4.3247 2.4622 -0.0011 6 6 3.6221 3.6710 -0.0069 7 6 4.3015 4.8558 -0.0018 8 6 5.6998 4.8599 -0.0022 9 6 6.4341 6.1403 -0.0033 10 7 7.7405 6.2752 0.0016 11 6 8.0365 7.5826 -0.0042 12 6 6.8773 8.2683 -0.0040 13 8 5.8778 7.3645 -0.0035 14 6 6.4024 3.6510 -0.0021 15 6 5.7229 2.4663 -0.0021 16 6 4.2957 -0.0294 -0.0005 17 6 3.6229 -1.2132 0.0062 18 6 2.2130 -1.2200 0.0005 19 6 1.5118 -2.4427 0.0016 20 1 0.5111 -2.4910 0.4049 21 6 2.1125 -3.5947 -0.5202 22 7 3.0526 -3.4900 -1.4236 23 14 1.5713 -5.2810 0.0738 24 1 2.3563 -6.3282 -0.6279 25 1 1.8014 -5.3878 1.5370 26 1 0.1268 -5.4675 -0.2150 27 1 -0.3633 0.0005 1.0276 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3633 -0.8902 -0.5135 30 1 1.6493 2.1142 -0.0005 31 1 2.5422 3.6679 -0.0114 32 1 3.7588 5.7896 -0.0017 33 1 9.0282 8.0101 -0.0047 34 1 6.7690 9.3428 -0.0048 35 1 7.4824 3.6541 -0.0029 36 1 6.2656 1.5325 -0.0024 37 1 5.3757 -0.0230 -0.0005 38 1 4.1683 -2.1454 0.0111 39 1 3.2749 -2.6215 -1.7938 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245623303.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:07:12 Heat of formation + Delta-G solvation = 50.101576 kcal Electronic energy + Delta-G solvation = -22627.284104 eV Core-core repulsion = 19272.238917 eV Total energy + Delta-G solvation = -3355.045187 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.116 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.20599 -39.20457 -37.82456 -34.77396 -34.40640 -32.69150 -31.49090 -30.77456 -29.79521 -28.14305 -26.39045 -25.20533 -23.21430 -23.05654 -21.84080 -21.34992 -20.24397 -19.59572 -18.11306 -17.88359 -16.55946 -16.26234 -15.37626 -15.23191 -14.87328 -14.53207 -14.20490 -13.74106 -13.47983 -13.24947 -13.18823 -13.00566 -12.75988 -12.59444 -12.28515 -11.90491 -11.59243 -11.43100 -11.33543 -11.30627 -10.93657 -10.79271 -10.65352 -10.54654 -10.48552 -9.75154 -9.59637 -9.58403 -9.20216 -8.76508 -8.35732 -7.83317 -7.49028 -7.15390 -4.63353 0.73615 1.76987 1.80272 2.52667 2.71262 2.76526 2.91663 3.02356 3.18392 3.22846 3.80832 4.07002 4.10300 4.50693 4.87255 4.93186 5.16772 5.24313 5.28940 5.47085 5.61881 5.69408 5.74018 5.91253 5.92271 5.95609 6.13420 6.19819 6.25760 6.38236 6.46254 6.47557 6.64365 6.70702 6.72755 6.83659 6.90444 7.02606 7.17589 7.24157 7.49560 7.54360 7.66515 7.73826 7.78864 7.91904 8.07063 8.47537 8.59782 9.73034 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.036644 B = 0.002618 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.917486 B =10691.822417 C =11346.278842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.204 4.204 3 C -0.045 4.045 4 C -0.226 4.226 5 C 0.058 3.942 6 C -0.157 4.157 7 C -0.067 4.067 8 C -0.089 4.089 9 C 0.262 3.738 10 N -0.492 5.492 11 C -0.037 4.037 12 C -0.096 4.096 13 O -0.201 6.201 14 C -0.048 4.048 15 C -0.158 4.158 16 C -0.051 4.051 17 C -0.225 4.225 18 C 0.105 3.895 19 C -0.484 4.484 20 H 0.085 0.915 21 C 0.034 3.966 22 N -0.772 5.772 23 Si 1.065 2.935 24 H -0.271 1.271 25 H -0.271 1.271 26 H -0.273 1.273 27 H 0.044 0.956 28 H 0.040 0.960 29 H 0.061 0.939 30 H 0.096 0.904 31 H 0.126 0.874 32 H 0.120 0.880 33 H 0.182 0.818 34 H 0.213 0.787 35 H 0.128 0.872 36 H 0.128 0.872 37 H 0.097 0.903 38 H 0.108 0.892 39 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.810 12.444 1.767 12.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.205 4.205 3 C -0.063 4.063 4 C -0.227 4.227 5 C 0.057 3.943 6 C -0.175 4.175 7 C -0.087 4.087 8 C -0.091 4.091 9 C 0.059 3.941 10 N -0.221 5.221 11 C -0.177 4.177 12 C -0.166 4.166 13 O -0.088 6.088 14 C -0.067 4.067 15 C -0.175 4.175 16 C -0.070 4.070 17 C -0.245 4.245 18 C 0.101 3.899 19 C -0.510 4.510 20 H 0.103 0.897 21 C -0.191 4.191 22 N -0.394 5.394 23 Si 0.888 3.112 24 H -0.196 1.196 25 H -0.197 1.197 26 H -0.198 1.198 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.080 0.920 30 H 0.114 0.886 31 H 0.144 0.856 32 H 0.138 0.862 33 H 0.199 0.801 34 H 0.229 0.771 35 H 0.146 0.854 36 H 0.145 0.855 37 H 0.115 0.885 38 H 0.126 0.874 39 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.560 10.337 1.565 11.045 hybrid contribution -0.505 2.625 0.122 2.676 sum 3.054 12.962 1.687 13.423 Atomic orbital electron populations 1.20417 0.93140 1.00773 0.99942 1.19397 0.94654 0.92816 1.13631 1.20344 0.92818 0.96229 0.96936 1.17988 0.92530 0.90487 1.21666 1.19219 0.92536 0.93050 0.89478 1.20825 1.00064 0.91271 1.05333 1.20736 0.92248 0.98428 0.97255 1.17103 0.92004 0.86064 1.13932 1.24122 0.86973 0.84710 0.98247 1.70679 1.12175 1.19101 1.20162 1.23344 1.00012 0.89016 1.05324 1.25030 0.85935 0.95797 1.09858 1.84512 1.37963 1.16406 1.69941 1.20683 0.99915 0.90395 0.95680 1.20891 0.93798 0.97624 1.05237 1.20498 0.97545 0.92235 0.96706 1.20847 0.94319 0.96770 1.12516 1.17676 0.91749 0.92330 0.88100 1.20812 1.03198 0.93701 1.33311 0.89667 1.27248 0.92724 1.05932 0.93185 1.70444 1.21119 1.32161 1.15635 0.83619 0.77133 0.73073 0.77414 1.19552 1.19667 1.19785 0.93770 0.94072 0.92045 0.88581 0.85650 0.86187 0.80099 0.77077 0.85386 0.85453 0.88544 0.87449 0.88173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.64 9.39 36.01 0.34 -1.31 16 2 C -0.20 -4.54 5.90 -104.33 -0.62 -5.16 16 3 C -0.05 -0.94 8.99 -39.64 -0.36 -1.30 16 4 C -0.23 -4.71 5.90 -104.64 -0.62 -5.33 16 5 C 0.06 1.07 5.88 -104.81 -0.62 0.45 16 6 C -0.16 -2.60 9.37 -39.59 -0.37 -2.97 16 7 C -0.07 -1.03 9.66 -39.58 -0.38 -1.41 16 8 C -0.09 -1.44 5.88 -104.89 -0.62 -2.06 16 9 C 0.26 4.07 7.89 -13.95 -0.11 3.96 16 10 N -0.49 -7.54 10.90 -11.75 -0.13 -7.67 16 11 C -0.04 -0.43 11.88 -17.84 -0.21 -0.64 16 12 C -0.10 -0.99 12.18 29.47 0.36 -0.63 16 13 O -0.20 -2.78 10.51 4.01 0.04 -2.74 16 14 C -0.05 -0.77 9.63 -39.59 -0.38 -1.15 16 15 C -0.16 -2.69 9.37 -39.59 -0.37 -3.06 16 16 C -0.05 -1.11 9.35 -39.64 -0.37 -1.48 16 17 C -0.23 -5.34 7.88 -39.28 -0.31 -5.65 16 18 C 0.10 2.54 5.29 -106.80 -0.57 1.97 16 19 C -0.48 -11.55 8.04 -37.89 -0.30 -11.86 16 20 H 0.09 1.95 6.91 -52.49 -0.36 1.59 16 21 C 0.03 0.78 4.93 -17.33 -0.09 0.69 16 22 N -0.77 -18.84 12.31 55.55 0.68 -18.16 16 23 Si 1.07 19.56 30.00 -169.99 -5.10 14.46 16 24 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 25 H -0.27 -4.85 7.11 56.52 0.40 -4.45 16 26 H -0.27 -4.73 7.11 56.52 0.40 -4.33 16 27 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.04 0.69 8.08 -51.93 -0.42 0.27 16 29 H 0.06 1.20 6.76 -51.93 -0.35 0.85 16 30 H 0.10 1.76 6.16 -52.48 -0.32 1.44 16 31 H 0.13 1.92 6.16 -52.49 -0.32 1.59 16 32 H 0.12 1.59 7.89 -52.49 -0.41 1.18 16 33 H 0.18 1.44 8.06 -52.49 -0.42 1.02 16 34 H 0.21 1.17 8.06 -52.49 -0.42 0.75 16 35 H 0.13 1.92 7.82 -52.49 -0.41 1.51 16 36 H 0.13 2.04 6.16 -52.49 -0.32 1.72 16 37 H 0.10 1.86 6.16 -52.48 -0.32 1.54 16 38 H 0.11 2.61 6.50 -52.48 -0.34 2.27 16 39 H 0.30 7.64 6.70 -40.82 -0.27 7.37 16 LS Contribution 331.99 15.07 5.00 5.00 Total: -1.00 -26.90 331.99 -9.02 -35.92 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -3.93 Total: 10.10 kcal Atomic # 6 Polarization: -31.33 SS G_CDS: -5.59 Total: -36.92 kcal Atomic # 7 Polarization: -26.38 SS G_CDS: 0.56 Total: -25.82 kcal Atomic # 8 Polarization: -2.78 SS G_CDS: 0.04 Total: -2.74 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.10 Total: 14.46 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -26.90 -9.02 -35.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245623303.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.022 kcal (2) G-P(sol) polarization free energy of solvation -26.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds