Wall clock time and date at job start Tue Mar 31 2020 08:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36207 * 120.05961 * 2 1 4 4 C 1.40030 * 120.11634 * 180.02562 * 3 2 1 5 5 C 1.47780 * 119.88817 * 179.97438 * 4 3 2 6 6 C 1.39818 * 120.00081 * 359.72553 * 5 4 3 7 7 C 1.36579 * 119.99950 * 179.72457 * 6 5 4 8 8 C 1.39833 * 119.99610 * 0.54553 * 7 6 5 9 9 C 1.47601 * 119.99846 * 179.70083 * 8 7 6 10 10 N 1.31334 * 125.72950 * 179.71167 * 9 8 7 11 11 C 1.34054 * 108.65331 * 179.87529 * 10 9 8 12 12 C 1.34685 * 107.84638 * 0.39210 * 11 10 9 13 13 O 1.34472 * 125.73011 * 0.02562 * 9 8 7 14 14 C 1.39822 * 120.00121 * 359.72350 * 8 7 6 15 15 C 1.36578 * 119.99791 * 0.02562 * 14 8 7 16 16 C 1.40066 * 120.21549 * 359.97438 * 4 3 2 17 17 C 1.36166 * 120.11717 * 359.69563 * 16 4 3 18 18 C 1.40950 * 120.05577 * 179.97438 * 2 1 3 19 19 C 1.40952 * 120.11196 * 359.97438 * 18 2 1 20 20 H 1.08000 * 120.00158 * 334.48727 * 19 18 2 21 21 C 1.40003 * 120.00252 * 154.48069 * 19 18 2 22 22 N 1.30804 * 119.99646 * 334.59513 * 21 19 18 23 23 Si 1.86800 * 119.99893 * 154.59649 * 21 19 18 24 24 H 1.48501 * 109.46517 * 180.02562 * 23 21 19 25 25 H 1.48496 * 109.47026 * 299.99890 * 23 21 19 26 26 H 1.48493 * 109.47159 * 60.00141 * 23 21 19 27 27 H 1.08995 * 109.47172 * 270.02594 * 1 2 3 28 28 H 1.09001 * 109.46695 * 30.02291 * 1 2 3 29 29 H 1.08999 * 109.46938 * 150.02323 * 1 2 3 30 30 H 1.08004 * 119.94171 * 359.97148 * 3 2 1 31 31 H 1.07995 * 120.00200 * 359.97438 * 6 5 4 32 32 H 1.08000 * 120.00405 * 180.27881 * 7 6 5 33 33 H 1.07996 * 126.07720 * 180.16029 * 11 10 9 34 34 H 1.07994 * 126.35693 * 179.79977 * 12 11 10 35 35 H 1.07996 * 120.00083 * 179.97438 * 14 8 7 36 36 H 1.08000 * 120.00284 * 179.97438 * 15 14 8 37 37 H 1.08005 * 119.93459 * 180.02562 * 16 4 3 38 38 H 1.08003 * 120.05853 * 180.29557 * 17 16 4 39 39 H 0.96991 * 120.00045 * 354.16269 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1893 1.1789 0.0000 4 6 3.5896 1.1803 -0.0005 5 6 4.3247 2.4622 -0.0011 6 6 3.6221 3.6710 -0.0069 7 6 4.3015 4.8558 -0.0018 8 6 5.6998 4.8599 -0.0022 9 6 6.4341 6.1403 -0.0033 10 7 7.7405 6.2752 0.0016 11 6 8.0365 7.5826 -0.0042 12 6 6.8773 8.2683 -0.0040 13 8 5.8778 7.3645 -0.0035 14 6 6.4024 3.6510 -0.0021 15 6 5.7229 2.4663 -0.0021 16 6 4.2957 -0.0294 -0.0005 17 6 3.6229 -1.2132 0.0062 18 6 2.2130 -1.2200 0.0005 19 6 1.5118 -2.4427 0.0016 20 1 0.5111 -2.4910 0.4049 21 6 2.1125 -3.5947 -0.5202 22 7 3.0526 -3.4900 -1.4236 23 14 1.5713 -5.2810 0.0738 24 1 2.3563 -6.3282 -0.6279 25 1 1.8014 -5.3878 1.5370 26 1 0.1268 -5.4675 -0.2150 27 1 -0.3633 0.0005 1.0276 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3633 -0.8902 -0.5135 30 1 1.6493 2.1142 -0.0005 31 1 2.5422 3.6679 -0.0114 32 1 3.7588 5.7896 -0.0017 33 1 9.0282 8.0101 -0.0047 34 1 6.7690 9.3428 -0.0048 35 1 7.4824 3.6541 -0.0029 36 1 6.2656 1.5325 -0.0024 37 1 5.3757 -0.0230 -0.0005 38 1 4.1683 -2.1454 0.0111 39 1 3.2749 -2.6215 -1.7938 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245623303.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:07:11 Heat of formation + Delta-G solvation = 37.028029 kcal Electronic energy + Delta-G solvation = -22627.851015 eV Core-core repulsion = 19272.238917 eV Total energy + Delta-G solvation = -3355.612099 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.116 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.21288 -40.66405 -39.37224 -36.10008 -35.75513 -34.18359 -32.95166 -32.10544 -31.19674 -29.48441 -27.97990 -26.73754 -24.61730 -24.22633 -23.09422 -22.63046 -21.70246 -21.14649 -19.71062 -19.05376 -17.59190 -17.51497 -16.70981 -16.59307 -16.40446 -15.83293 -15.60702 -15.07227 -14.96045 -14.63452 -14.50394 -14.33955 -14.05724 -13.98609 -13.87662 -13.48733 -13.12005 -12.84836 -12.78487 -12.63351 -12.35162 -12.16445 -12.12759 -11.96447 -11.60143 -11.34944 -11.21459 -11.01993 -10.70597 -10.04629 -9.69741 -9.54331 -9.20147 -8.68595 -6.40562 -0.51498 0.49975 0.58973 1.01747 1.14940 1.51326 1.62058 1.73021 1.79203 1.86400 2.30144 2.58106 2.99473 3.06396 3.58052 3.81470 3.97350 4.00605 4.08300 4.15072 4.27911 4.34964 4.45280 4.52091 4.59662 4.69883 4.78973 4.90330 4.96354 4.97507 5.04177 5.09849 5.18776 5.23259 5.25597 5.40702 5.44872 5.46186 5.54020 5.73422 5.78409 5.90229 6.03199 6.12981 6.20884 6.35643 6.72386 6.75446 6.89432 7.95372 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.036644 B = 0.002618 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.917486 B =10691.822417 C =11346.278842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.219 4.219 3 C -0.056 4.056 4 C -0.214 4.214 5 C 0.024 3.976 6 C -0.146 4.146 7 C -0.069 4.069 8 C -0.074 4.074 9 C 0.225 3.775 10 N -0.509 5.509 11 C -0.060 4.060 12 C -0.067 4.067 13 O -0.208 6.208 14 C -0.057 4.057 15 C -0.153 4.153 16 C -0.065 4.065 17 C -0.245 4.245 18 C 0.077 3.923 19 C -0.522 4.522 20 H 0.085 0.915 21 C 0.002 3.998 22 N -0.804 5.804 23 Si 1.114 2.886 24 H -0.274 1.274 25 H -0.264 1.264 26 H -0.254 1.254 27 H 0.055 0.945 28 H 0.064 0.936 29 H 0.049 0.951 30 H 0.125 0.875 31 H 0.141 0.859 32 H 0.146 0.854 33 H 0.214 0.786 34 H 0.263 0.737 35 H 0.136 0.864 36 H 0.130 0.870 37 H 0.112 0.888 38 H 0.089 0.911 39 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.041 16.384 2.294 16.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.220 4.220 3 C -0.074 4.074 4 C -0.215 4.215 5 C 0.024 3.976 6 C -0.164 4.164 7 C -0.088 4.088 8 C -0.076 4.076 9 C 0.023 3.977 10 N -0.239 5.239 11 C -0.199 4.199 12 C -0.137 4.137 13 O -0.094 6.094 14 C -0.076 4.076 15 C -0.170 4.170 16 C -0.083 4.083 17 C -0.264 4.264 18 C 0.074 3.926 19 C -0.549 4.549 20 H 0.103 0.897 21 C -0.216 4.216 22 N -0.426 5.426 23 Si 0.931 3.069 24 H -0.198 1.198 25 H -0.189 1.189 26 H -0.178 1.178 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.143 0.857 31 H 0.158 0.842 32 H 0.164 0.836 33 H 0.230 0.770 34 H 0.279 0.721 35 H 0.154 0.846 36 H 0.148 0.852 37 H 0.130 0.870 38 H 0.107 0.893 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.774 14.302 2.096 14.939 hybrid contribution -0.271 2.069 -0.013 2.087 sum 3.503 16.371 2.083 16.871 Atomic orbital electron populations 1.20397 0.91126 1.01380 1.00816 1.19842 0.96452 0.92657 1.13036 1.20666 0.93012 0.96989 0.96727 1.18330 0.93006 0.91255 1.18890 1.19210 0.93084 0.92689 0.92638 1.21009 1.00867 0.90843 1.03662 1.20964 0.92066 0.99022 0.96736 1.17360 0.92573 0.86640 1.10980 1.23901 0.87209 0.85127 1.01501 1.70630 1.12298 1.21537 1.19448 1.23975 1.02146 0.87787 1.06032 1.26101 0.84722 0.97255 1.05621 1.84514 1.39001 1.16294 1.69623 1.20766 1.00417 0.90227 0.96184 1.20986 0.93521 0.98306 1.04227 1.20720 0.98529 0.92148 0.96911 1.20821 0.94655 0.96793 1.14147 1.18020 0.92162 0.93552 0.88878 1.20884 1.03691 0.94500 1.35834 0.89683 1.28510 0.91925 1.09060 0.92147 1.70551 1.23518 1.30851 1.17675 0.83038 0.77677 0.69048 0.77168 1.19822 1.18865 1.17764 0.92641 0.91659 0.93156 0.85688 0.84172 0.83608 0.76977 0.72100 0.84567 0.85181 0.87003 0.89333 0.90091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.06 9.39 71.24 0.67 -2.39 16 2 C -0.22 -9.90 5.90 -19.67 -0.12 -10.02 16 3 C -0.06 -2.31 8.99 22.23 0.20 -2.11 16 4 C -0.21 -8.94 5.90 -19.88 -0.12 -9.06 16 5 C 0.02 0.88 5.88 -19.99 -0.12 0.76 16 6 C -0.15 -4.49 9.37 22.26 0.21 -4.28 16 7 C -0.07 -1.91 9.66 22.27 0.22 -1.70 16 8 C -0.07 -2.22 5.88 -20.04 -0.12 -2.34 16 9 C 0.22 6.39 7.89 87.24 0.69 7.08 16 10 N -0.51 -14.25 10.90 -305.08 -3.32 -17.57 16 11 C -0.06 -1.16 11.88 83.54 0.99 -0.16 16 12 C -0.07 -1.07 12.18 67.00 0.82 -0.25 16 13 O -0.21 -4.95 10.51 -8.56 -0.09 -5.04 16 14 C -0.06 -1.75 9.63 22.26 0.21 -1.54 16 15 C -0.15 -5.09 9.37 22.27 0.21 -4.88 16 16 C -0.06 -2.91 9.35 22.23 0.21 -2.71 16 17 C -0.24 -12.33 7.88 22.46 0.18 -12.15 16 18 C 0.08 3.91 5.29 -21.27 -0.11 3.80 16 19 C -0.52 -26.31 8.04 23.36 0.19 -26.12 16 20 H 0.09 4.10 6.91 -2.91 -0.02 4.08 16 21 C 0.00 0.08 4.93 85.27 0.42 0.50 16 22 N -0.80 -41.90 12.31 21.84 0.27 -41.63 16 23 Si 1.11 40.89 30.00 68.60 2.06 42.94 16 24 H -0.27 -10.01 7.11 99.48 0.71 -9.30 16 25 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 26 H -0.25 -8.42 7.11 99.48 0.71 -7.72 16 27 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.06 2.11 8.08 -2.39 -0.02 2.09 16 29 H 0.05 2.00 6.76 -2.39 -0.02 1.98 16 30 H 0.13 4.31 6.16 -2.91 -0.02 4.30 16 31 H 0.14 3.84 6.16 -2.91 -0.02 3.82 16 32 H 0.15 3.30 7.89 -2.91 -0.02 3.27 16 33 H 0.21 2.46 8.06 -2.91 -0.02 2.44 16 34 H 0.26 1.17 8.06 -2.91 -0.02 1.14 16 35 H 0.14 3.93 7.82 -2.91 -0.02 3.91 16 36 H 0.13 4.17 6.16 -2.91 -0.02 4.15 16 37 H 0.11 4.49 6.16 -2.91 -0.02 4.48 16 38 H 0.09 4.68 6.50 -2.91 -0.02 4.66 16 39 H 0.29 15.62 6.70 -92.71 -0.62 15.00 16 Total: -1.00 -61.96 331.99 4.78 -57.19 By element: Atomic # 1 Polarization: 30.45 SS G_CDS: 1.24 Total: 31.69 kcal Atomic # 6 Polarization: -72.21 SS G_CDS: 4.62 Total: -67.58 kcal Atomic # 7 Polarization: -56.14 SS G_CDS: -3.06 Total: -59.20 kcal Atomic # 8 Polarization: -4.95 SS G_CDS: -0.09 Total: -5.04 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 2.06 Total: 42.94 kcal Total: -61.96 4.78 -57.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245623303.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.214 kcal (2) G-P(sol) polarization free energy of solvation -61.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds