Wall clock time and date at job start Tue Mar 31 2020 08:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47211 * 2 1 4 4 H 1.09001 * 109.46644 * 305.91033 * 3 2 1 5 5 C 1.50701 * 109.47480 * 185.91107 * 3 2 1 6 6 H 1.08000 * 120.00151 * 243.24272 * 5 3 2 7 7 C 1.37877 * 120.00076 * 63.23655 * 5 3 2 8 8 N 1.31513 * 120.00092 * 195.95851 * 7 5 3 9 9 Si 1.86805 * 119.99885 * 15.95601 * 7 5 3 10 10 H 1.48500 * 109.46838 * 93.43085 * 9 7 5 11 11 H 1.48496 * 109.47431 * 213.42979 * 9 7 5 12 12 H 1.48496 * 109.47137 * 333.43130 * 9 7 5 13 13 N 1.46894 * 109.47305 * 65.90679 * 3 2 1 14 14 C 1.46905 * 111.00245 * 258.82660 * 13 3 2 15 15 C 1.50693 * 109.47164 * 175.62852 * 14 13 3 16 16 C 1.38221 * 120.01516 * 260.27130 * 15 14 13 17 17 C 1.38218 * 120.03026 * 180.27172 * 16 15 14 18 18 C 1.38271 * 120.05128 * 359.45858 * 17 16 15 19 19 C 1.38174 * 120.02376 * 0.26585 * 18 17 16 20 20 C 1.50694 * 120.01432 * 179.97438 * 19 18 17 21 21 F 1.39903 * 109.47188 * 0.02562 * 20 19 18 22 22 F 1.39904 * 109.47302 * 120.00049 * 20 19 18 23 23 F 1.39903 * 109.47466 * 240.00491 * 20 19 18 24 24 C 1.38446 * 120.01623 * 79.99847 * 15 14 13 25 25 F 1.35091 * 120.02334 * 359.97438 * 24 15 14 26 26 H 1.09002 * 109.46953 * 175.90329 * 1 2 3 27 27 H 1.08995 * 109.47190 * 295.90213 * 1 2 3 28 28 H 1.08996 * 109.47277 * 55.90772 * 1 2 3 29 29 H 1.08996 * 109.47639 * 239.99361 * 2 1 3 30 30 H 1.09002 * 109.47129 * 119.99124 * 2 1 3 31 31 H 0.97005 * 119.99621 * 180.02562 * 8 7 5 32 32 H 1.00902 * 111.00598 * 22.77706 * 13 3 2 33 33 H 1.08995 * 109.47061 * 55.62232 * 14 13 3 34 34 H 1.08997 * 109.46642 * 295.62550 * 14 13 3 35 35 H 1.08010 * 119.98378 * 0.03051 * 16 15 14 36 36 H 1.08006 * 119.97715 * 179.72322 * 17 16 15 37 37 H 1.08000 * 119.98718 * 180.29329 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5928 1.9859 -0.8324 5 6 3.5399 1.4451 -0.1463 6 1 4.1591 1.8382 0.6464 7 6 4.1216 0.9455 -1.2922 8 7 5.4040 0.6542 -1.3054 9 14 3.0882 0.6823 -2.8259 10 1 3.1732 1.8853 -3.6924 11 1 3.5961 -0.4992 -3.5683 12 1 1.6740 0.4517 -2.4363 13 7 1.6702 2.0926 1.2643 14 6 0.4973 2.9593 1.0873 15 6 0.0834 3.5231 2.4221 16 6 -0.9683 2.9554 3.1164 17 6 -1.3518 3.4758 4.3380 18 6 -0.6769 4.5579 4.8724 19 6 0.3785 5.1236 4.1828 20 6 1.1135 6.3032 4.7651 21 9 0.5497 6.6407 6.0002 22 9 2.4609 5.9714 4.9433 23 9 1.0128 7.3923 3.8928 24 6 0.7600 4.6065 2.9561 25 9 1.7920 5.1585 2.2813 26 1 -0.3633 -1.0251 -0.0734 27 1 -0.3633 0.4489 0.9244 28 1 -0.3633 0.5760 -0.8510 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 5.8134 0.3031 -2.1117 32 1 1.5087 1.4091 1.9887 33 1 -0.3239 2.3781 0.6679 34 1 0.7478 3.7756 0.4099 35 1 -1.4932 2.1071 2.7022 36 1 -2.1766 3.0343 4.8777 37 1 -0.9744 4.9607 5.8292 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255152243.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:53:42 Heat of formation + Delta-G solvation = -168.584358 kcal Electronic energy + Delta-G solvation = -25439.912396 eV Core-core repulsion = 21102.758310 eV Total energy + Delta-G solvation = -4337.154086 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.110 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.27304 -48.90244 -47.74690 -47.65185 -39.49599 -36.90589 -33.48222 -32.05178 -31.54839 -30.15857 -27.59112 -26.22907 -24.82856 -22.55485 -22.42231 -21.39504 -20.03717 -18.64025 -18.55817 -18.32148 -17.40127 -16.77175 -16.42214 -15.69911 -15.21650 -15.02544 -14.80770 -14.52744 -14.51395 -14.12643 -14.05566 -13.86613 -13.83711 -13.63138 -13.27127 -13.19951 -12.96631 -12.68369 -12.46402 -12.32191 -11.91157 -11.76799 -11.43207 -11.34288 -10.91886 -10.74146 -10.44261 -10.00317 -9.58430 -9.41494 -9.33736 -8.86535 -8.38740 -7.43917 -6.05857 -3.97569 0.60315 0.91150 2.50676 3.13921 3.26645 3.35376 3.38344 3.54075 3.78621 4.06992 4.30321 4.42767 4.50282 4.61884 4.86121 4.91531 5.18981 5.19621 5.28451 5.52891 5.67556 5.70842 5.77489 5.81117 5.91297 5.94681 5.99156 6.14242 6.39434 6.49875 6.53001 6.68108 6.78440 7.12758 7.72185 7.85875 8.22800 8.70046 9.12980 9.60235 11.07665 Molecular weight = 305.11amu Principal moments of inertia in cm(-1) A = 0.020681 B = 0.004086 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.568765 B = 6851.721607 C = 7711.064315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.151 4.151 3 C 0.194 3.806 4 H 0.025 0.975 5 C -0.500 4.500 6 H 0.081 0.919 7 C 0.072 3.928 8 N -0.893 5.893 9 Si 0.858 3.142 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.255 1.255 13 N -0.664 5.664 14 C 0.092 3.908 15 C -0.112 4.112 16 C -0.057 4.057 17 C -0.136 4.136 18 C -0.052 4.052 19 C -0.230 4.230 20 C 0.514 3.486 21 F -0.178 7.178 22 F -0.170 7.170 23 F -0.174 7.174 24 C 0.178 3.822 25 F -0.109 7.109 26 H 0.042 0.958 27 H 0.044 0.956 28 H 0.046 0.954 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.262 0.738 32 H 0.329 0.671 33 H 0.043 0.957 34 H 0.082 0.918 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.603 6.701 11.993 21.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.190 4.190 3 C 0.086 3.914 4 H 0.043 0.957 5 C -0.539 4.539 6 H 0.099 0.901 7 C -0.129 4.129 8 N -0.531 5.531 9 Si 0.685 3.315 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.180 1.180 13 N -0.294 5.294 14 C -0.037 4.037 15 C -0.113 4.113 16 C -0.075 4.075 17 C -0.154 4.154 18 C -0.070 4.070 19 C -0.232 4.232 20 C 0.459 3.541 21 F -0.159 7.159 22 F -0.151 7.151 23 F -0.155 7.155 24 C 0.157 3.843 25 F -0.087 7.087 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.146 0.854 33 H 0.061 0.939 34 H 0.100 0.900 35 H 0.157 0.843 36 H 0.157 0.843 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -15.908 7.201 11.766 21.056 hybrid contribution -0.779 -0.562 -1.047 1.421 sum -16.687 6.639 10.719 20.915 Atomic orbital electron populations 1.21972 0.98591 1.00357 1.00348 1.22625 0.92676 1.01548 1.02147 1.19591 0.96998 0.88160 0.86670 0.95736 1.20960 0.89022 1.39969 1.03911 0.90098 1.24897 0.94734 0.94781 0.98535 1.69978 1.11544 1.43355 1.28200 0.87295 0.81977 0.77828 0.84356 1.20763 1.21438 1.17969 1.60740 1.32866 1.25703 1.10092 1.21047 0.93667 0.98026 0.91009 1.20187 0.96544 0.95267 0.99293 1.21250 0.94432 0.98107 0.93735 1.21127 1.01094 0.96853 0.96322 1.20851 0.92186 0.94815 0.99181 1.20076 1.03731 1.01210 0.98188 1.18040 0.77613 0.82676 0.75727 1.93151 1.84950 1.93247 1.44553 1.93268 1.34274 1.92330 1.95204 1.93233 1.95935 1.57084 1.69285 1.17134 0.85616 0.92575 0.88930 1.91632 1.54642 1.83595 1.78810 0.93841 0.93721 0.93516 0.91939 0.92276 0.92784 0.85357 0.93888 0.90019 0.84343 0.84338 0.83845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 8.74 37.16 0.32 -2.12 16 2 C -0.15 -3.02 4.49 -26.73 -0.12 -3.14 16 3 C 0.19 4.35 1.73 -68.87 -0.12 4.23 16 4 H 0.02 0.57 6.36 -51.93 -0.33 0.24 16 5 C -0.50 -13.93 9.29 -34.44 -0.32 -14.25 16 6 H 0.08 2.53 8.06 -52.49 -0.42 2.11 16 7 C 0.07 2.06 5.32 -17.82 -0.09 1.96 16 8 N -0.89 -27.21 13.96 55.43 0.77 -26.44 16 9 Si 0.86 20.77 25.75 -169.99 -4.38 16.39 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.26 -5.69 5.48 56.52 0.31 -5.38 16 13 N -0.66 -12.88 6.09 -109.23 -0.67 -13.54 16 14 C 0.09 1.45 4.91 -4.98 -0.02 1.43 16 15 C -0.11 -1.51 5.35 -104.55 -0.56 -2.07 16 16 C -0.06 -0.57 9.67 -39.60 -0.38 -0.95 16 17 C -0.14 -1.15 10.04 -39.58 -0.40 -1.55 16 18 C -0.05 -0.50 9.43 -39.59 -0.37 -0.87 16 19 C -0.23 -2.91 5.38 -104.56 -0.56 -3.47 16 20 C 0.51 6.70 3.03 36.00 0.11 6.81 16 21 F -0.18 -2.02 15.97 2.25 0.04 -1.98 16 22 F -0.17 -2.51 17.06 2.25 0.04 -2.47 16 23 F -0.17 -2.40 17.06 2.25 0.04 -2.36 16 24 C 0.18 2.65 7.08 -39.41 -0.28 2.37 16 25 F -0.11 -1.94 15.86 2.25 0.04 -1.90 16 26 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.04 0.61 6.51 -51.93 -0.34 0.27 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 1.36 4.86 -51.93 -0.25 1.11 16 30 H 0.06 1.17 8.01 -51.93 -0.42 0.76 16 31 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 32 H 0.33 5.90 7.96 -39.29 -0.31 5.58 16 33 H 0.04 0.61 5.84 -51.93 -0.30 0.30 16 34 H 0.08 1.40 7.95 -51.93 -0.41 0.99 16 35 H 0.14 1.10 8.04 -52.48 -0.42 0.68 16 36 H 0.14 0.74 8.06 -52.48 -0.42 0.32 16 37 H 0.14 1.04 7.16 -52.49 -0.38 0.67 16 LS Contribution 319.28 15.07 4.81 4.81 Total: -1.00 -30.70 319.28 -6.19 -36.88 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -4.08 Total: 2.25 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: -2.80 Total: -11.64 kcal Atomic # 7 Polarization: -40.09 SS G_CDS: 0.11 Total: -39.98 kcal Atomic # 9 Polarization: -8.86 SS G_CDS: 0.15 Total: -8.71 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.38 Total: 16.39 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.70 -6.19 -36.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152243.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.699 kcal (2) G-P(sol) polarization free energy of solvation -30.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds