Wall clock time and date at job start Tue Mar 31 2020 08:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47211 * 2 1 4 4 H 1.09001 * 109.46644 * 305.91033 * 3 2 1 5 5 C 1.50701 * 109.47480 * 185.91107 * 3 2 1 6 6 H 1.08000 * 120.00151 * 243.24272 * 5 3 2 7 7 C 1.37877 * 120.00076 * 63.23655 * 5 3 2 8 8 N 1.31513 * 120.00092 * 195.95851 * 7 5 3 9 9 Si 1.86805 * 119.99885 * 15.95601 * 7 5 3 10 10 H 1.48500 * 109.46838 * 93.43085 * 9 7 5 11 11 H 1.48496 * 109.47431 * 213.42979 * 9 7 5 12 12 H 1.48496 * 109.47137 * 333.43130 * 9 7 5 13 13 N 1.46894 * 109.47305 * 65.90679 * 3 2 1 14 14 C 1.46905 * 111.00245 * 258.82660 * 13 3 2 15 15 C 1.50693 * 109.47164 * 175.62852 * 14 13 3 16 16 C 1.38221 * 120.01516 * 260.27130 * 15 14 13 17 17 C 1.38218 * 120.03026 * 180.27172 * 16 15 14 18 18 C 1.38271 * 120.05128 * 359.45858 * 17 16 15 19 19 C 1.38174 * 120.02376 * 0.26585 * 18 17 16 20 20 C 1.50694 * 120.01432 * 179.97438 * 19 18 17 21 21 F 1.39903 * 109.47188 * 0.02562 * 20 19 18 22 22 F 1.39904 * 109.47302 * 120.00049 * 20 19 18 23 23 F 1.39903 * 109.47466 * 240.00491 * 20 19 18 24 24 C 1.38446 * 120.01623 * 79.99847 * 15 14 13 25 25 F 1.35091 * 120.02334 * 359.97438 * 24 15 14 26 26 H 1.09002 * 109.46953 * 175.90329 * 1 2 3 27 27 H 1.08995 * 109.47190 * 295.90213 * 1 2 3 28 28 H 1.08996 * 109.47277 * 55.90772 * 1 2 3 29 29 H 1.08996 * 109.47639 * 239.99361 * 2 1 3 30 30 H 1.09002 * 109.47129 * 119.99124 * 2 1 3 31 31 H 0.97005 * 119.99621 * 180.02562 * 8 7 5 32 32 H 1.00902 * 111.00598 * 22.77706 * 13 3 2 33 33 H 1.08995 * 109.47061 * 55.62232 * 14 13 3 34 34 H 1.08997 * 109.46642 * 295.62550 * 14 13 3 35 35 H 1.08010 * 119.98378 * 0.03051 * 16 15 14 36 36 H 1.08006 * 119.97715 * 179.72322 * 17 16 15 37 37 H 1.08000 * 119.98718 * 180.29329 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5928 1.9859 -0.8324 5 6 3.5399 1.4451 -0.1463 6 1 4.1591 1.8382 0.6464 7 6 4.1216 0.9455 -1.2922 8 7 5.4040 0.6542 -1.3054 9 14 3.0882 0.6823 -2.8259 10 1 3.1732 1.8853 -3.6924 11 1 3.5961 -0.4992 -3.5683 12 1 1.6740 0.4517 -2.4363 13 7 1.6702 2.0926 1.2643 14 6 0.4973 2.9593 1.0873 15 6 0.0834 3.5231 2.4221 16 6 -0.9683 2.9554 3.1164 17 6 -1.3518 3.4758 4.3380 18 6 -0.6769 4.5579 4.8724 19 6 0.3785 5.1236 4.1828 20 6 1.1135 6.3032 4.7651 21 9 0.5497 6.6407 6.0002 22 9 2.4609 5.9714 4.9433 23 9 1.0128 7.3923 3.8928 24 6 0.7600 4.6065 2.9561 25 9 1.7920 5.1585 2.2813 26 1 -0.3633 -1.0251 -0.0734 27 1 -0.3633 0.4489 0.9244 28 1 -0.3633 0.5760 -0.8510 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 5.8134 0.3031 -2.1117 32 1 1.5087 1.4091 1.9887 33 1 -0.3239 2.3781 0.6679 34 1 0.7478 3.7756 0.4099 35 1 -1.4932 2.1071 2.7022 36 1 -2.1766 3.0343 4.8777 37 1 -0.9744 4.9607 5.8292 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255152243.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:53:42 Heat of formation + Delta-G solvation = -188.598172 kcal Electronic energy + Delta-G solvation = -25440.780260 eV Core-core repulsion = 21102.758310 eV Total energy + Delta-G solvation = -4338.021950 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.110 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -51.31734 -50.06570 -48.75645 -48.75236 -40.40902 -38.42090 -34.93653 -33.82976 -32.56316 -31.33737 -29.27466 -27.18430 -26.23622 -24.11716 -23.33977 -22.48465 -21.73631 -19.66779 -19.62057 -19.39423 -18.73283 -18.38498 -17.47341 -16.99043 -16.68862 -16.33397 -15.85061 -15.73845 -15.59793 -15.53858 -15.17592 -14.99058 -14.90972 -14.83230 -14.80367 -14.40924 -14.31046 -13.85996 -13.62000 -13.43415 -13.33056 -13.25150 -12.70203 -12.61338 -12.40649 -12.35160 -12.00665 -11.65845 -11.35132 -11.25574 -10.55175 -10.33008 -9.80551 -8.95625 -8.26422 -6.22874 -0.25822 0.02935 1.33279 1.38040 1.46430 1.51383 2.29929 2.36735 2.55277 2.81548 3.06888 3.13531 3.26351 3.48008 3.72494 3.88394 4.06038 4.15299 4.29216 4.37185 4.41055 4.50007 4.61797 4.71195 4.84352 4.89683 4.96621 5.10399 5.15612 5.21445 5.25462 5.28012 5.54655 5.69275 5.75392 6.03932 6.69105 6.80698 6.83036 7.39771 8.91658 Molecular weight = 305.11amu Principal moments of inertia in cm(-1) A = 0.020681 B = 0.004086 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.568765 B = 6851.721607 C = 7711.064315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.148 4.148 3 C 0.201 3.799 4 H 0.023 0.977 5 C -0.509 4.509 6 H 0.024 0.976 7 C 0.012 3.988 8 N -0.948 5.948 9 Si 0.929 3.071 10 H -0.284 1.284 11 H -0.287 1.287 12 H -0.219 1.219 13 N -0.684 5.684 14 C 0.097 3.903 15 C -0.128 4.128 16 C -0.046 4.046 17 C -0.115 4.115 18 C -0.044 4.044 19 C -0.240 4.240 20 C 0.511 3.489 21 F -0.165 7.165 22 F -0.186 7.186 23 F -0.183 7.183 24 C 0.138 3.862 25 F -0.142 7.142 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.050 0.950 29 H 0.044 0.956 30 H 0.054 0.946 31 H 0.263 0.737 32 H 0.338 0.662 33 H 0.071 0.929 34 H 0.056 0.944 35 H 0.171 0.829 36 H 0.186 0.814 37 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.355 5.514 12.893 25.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.187 4.187 3 C 0.091 3.909 4 H 0.041 0.959 5 C -0.547 4.547 6 H 0.043 0.957 7 C -0.185 4.185 8 N -0.589 5.589 9 Si 0.753 3.247 10 H -0.210 1.210 11 H -0.213 1.213 12 H -0.141 1.141 13 N -0.315 5.315 14 C -0.031 4.031 15 C -0.129 4.129 16 C -0.064 4.064 17 C -0.132 4.132 18 C -0.062 4.062 19 C -0.242 4.242 20 C 0.457 3.543 21 F -0.147 7.147 22 F -0.167 7.167 23 F -0.164 7.164 24 C 0.118 3.882 25 F -0.120 7.120 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.156 0.844 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.188 0.812 36 H 0.203 0.797 37 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -20.698 6.024 12.695 25.017 hybrid contribution 0.715 -0.125 -1.129 1.342 sum -19.983 5.899 11.566 23.831 Atomic orbital electron populations 1.21889 0.94414 1.02248 1.01888 1.22443 0.96340 0.98827 1.01106 1.19345 0.93154 0.90269 0.88096 0.95877 1.21316 0.92121 1.38889 1.02413 0.95724 1.25807 0.95944 0.94623 1.02153 1.70146 1.14027 1.45474 1.29247 0.86158 0.81998 0.77395 0.79159 1.21009 1.21315 1.14141 1.60441 1.35972 1.26087 1.09002 1.20938 0.92878 0.96793 0.92496 1.20097 0.98284 0.95653 0.98870 1.21632 0.92727 0.98219 0.93804 1.21654 1.00978 0.95248 0.95319 1.21320 0.90541 0.94587 0.99720 1.20167 1.04880 1.01318 0.97846 1.18191 0.77117 0.82890 0.76068 1.93165 1.84592 1.93193 1.43715 1.93231 1.35723 1.92465 1.95317 1.93210 1.95915 1.57610 1.69691 1.17590 0.86127 0.94266 0.90258 1.91542 1.56396 1.84364 1.79699 0.91623 0.91223 0.93140 0.93757 0.92765 0.92797 0.84371 0.91077 0.92552 0.81168 0.79713 0.81052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.95 8.74 71.98 0.63 -3.32 16 2 C -0.15 -5.64 4.49 30.59 0.14 -5.50 16 3 C 0.20 8.95 1.73 44.17 0.08 9.03 16 4 H 0.02 1.05 6.36 -2.39 -0.02 1.03 16 5 C -0.51 -29.67 9.29 25.60 0.24 -29.43 16 6 H 0.02 1.66 8.06 -2.91 -0.02 1.63 16 7 C 0.01 0.68 5.32 84.65 0.45 1.13 16 8 N -0.95 -60.66 13.96 21.45 0.30 -60.36 16 9 Si 0.93 43.45 25.75 68.60 1.77 45.22 16 10 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 11 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 12 H -0.22 -8.88 5.48 99.48 0.55 -8.34 16 13 N -0.68 -26.53 6.09 -499.48 -3.04 -29.57 16 14 C 0.10 2.97 4.91 85.55 0.42 3.39 16 15 C -0.13 -3.24 5.35 -19.82 -0.11 -3.35 16 16 C -0.05 -0.71 9.67 22.26 0.22 -0.49 16 17 C -0.11 -1.29 10.04 22.27 0.22 -1.06 16 18 C -0.04 -0.67 9.43 22.26 0.21 -0.46 16 19 C -0.24 -5.82 5.38 -19.82 -0.11 -5.92 16 20 C 0.51 13.31 3.03 71.23 0.22 13.53 16 21 F -0.17 -3.52 15.97 44.97 0.72 -2.80 16 22 F -0.19 -5.73 17.06 44.97 0.77 -4.96 16 23 F -0.18 -5.18 17.06 44.97 0.77 -4.41 16 24 C 0.14 4.12 7.08 22.38 0.16 4.28 16 25 F -0.14 -5.40 15.86 44.97 0.71 -4.69 16 26 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.07 1.52 6.51 -2.39 -0.02 1.50 16 28 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.04 1.83 4.86 -2.39 -0.01 1.82 16 30 H 0.05 2.09 8.01 -2.39 -0.02 2.07 16 31 H 0.26 15.74 8.31 -92.70 -0.77 14.97 16 32 H 0.34 11.81 7.96 -89.69 -0.71 11.09 16 33 H 0.07 1.75 5.84 -2.39 -0.01 1.73 16 34 H 0.06 1.98 7.95 -2.39 -0.02 1.96 16 35 H 0.17 1.57 8.04 -2.91 -0.02 1.55 16 36 H 0.19 0.50 8.06 -2.91 -0.02 0.48 16 37 H 0.17 1.66 7.16 -2.91 -0.02 1.64 16 Total: -1.00 -74.00 319.28 5.00 -69.00 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: 0.25 Total: 10.77 kcal Atomic # 6 Polarization: -20.96 SS G_CDS: 2.76 Total: -18.19 kcal Atomic # 7 Polarization: -87.19 SS G_CDS: -2.74 Total: -89.93 kcal Atomic # 9 Polarization: -19.83 SS G_CDS: 2.97 Total: -16.86 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 1.77 Total: 45.22 kcal Total: -74.00 5.00 -69.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152243.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.599 kcal (2) G-P(sol) polarization free energy of solvation -73.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds