Wall clock time and date at job start Tue Mar 31 2020 08:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47329 * 2 1 4 4 H 1.09000 * 109.47253 * 174.00117 * 3 2 1 5 5 C 1.50696 * 109.47342 * 54.00152 * 3 2 1 6 6 H 1.08003 * 119.99888 * 240.00384 * 5 3 2 7 7 C 1.37873 * 120.00006 * 59.99821 * 5 3 2 8 8 N 1.31511 * 120.00151 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99910 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47233 * 60.00332 * 9 7 5 11 11 H 1.48504 * 109.47179 * 179.97438 * 9 7 5 12 12 H 1.48491 * 109.47361 * 299.99846 * 9 7 5 13 13 N 1.46899 * 109.47217 * 293.99833 * 3 2 1 14 14 C 1.46904 * 111.00395 * 274.32047 * 13 3 2 15 15 H 1.09003 * 109.46820 * 30.36204 * 14 13 3 16 16 C 1.50699 * 109.47238 * 150.35790 * 14 13 3 17 17 C 1.38269 * 119.98888 * 220.00434 * 16 14 13 18 18 C 1.38220 * 120.05276 * 180.02562 * 17 16 14 19 19 C 1.38221 * 120.02323 * 359.97438 * 18 17 16 20 20 C 1.38436 * 119.97432 * 359.97438 * 19 18 17 21 21 F 1.35109 * 120.02379 * 180.02562 * 20 19 18 22 22 C 1.38180 * 119.98569 * 39.73081 * 16 14 13 23 23 C 1.53000 * 109.47245 * 270.36374 * 14 13 3 24 24 F 1.39900 * 109.47213 * 59.99665 * 23 14 13 25 25 F 1.39899 * 109.47126 * 179.97438 * 23 14 13 26 26 F 1.39899 * 109.46795 * 299.99463 * 23 14 13 27 27 H 1.09002 * 109.47182 * 178.71406 * 1 2 3 28 28 H 1.09003 * 109.46686 * 298.71727 * 1 2 3 29 29 H 1.08996 * 109.46995 * 58.71674 * 1 2 3 30 30 H 1.08998 * 109.47570 * 120.00380 * 2 1 3 31 31 H 1.09004 * 109.47310 * 239.99893 * 2 1 3 32 32 H 0.96997 * 120.00462 * 179.97438 * 8 7 5 33 33 H 1.00897 * 111.00003 * 38.27945 * 13 3 2 34 34 H 1.08003 * 119.96912 * 359.97372 * 17 16 14 35 35 H 1.08000 * 119.98622 * 180.02562 * 18 17 16 36 36 H 1.08003 * 120.01253 * 180.02562 * 19 18 17 37 37 H 1.08001 * 120.01290 * 359.97438 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1247 1.4443 0.1074 5 6 1.4202 2.1944 1.1494 6 1 0.8136 3.0675 0.9591 7 6 1.6274 1.7679 2.4440 8 7 2.3656 0.7044 2.6758 9 14 0.8585 2.6997 3.8688 10 1 -0.6192 2.6966 3.7224 11 1 1.2300 2.0429 5.1479 12 1 1.3530 4.0998 3.8690 13 7 1.6722 2.0919 -1.2653 14 6 2.6726 1.8210 -2.3064 15 1 3.1269 0.8462 -2.1289 16 6 2.0052 1.8256 -3.6576 17 6 2.3686 0.8925 -4.6110 18 6 1.7578 0.8958 -5.8509 19 6 0.7823 1.8318 -6.1388 20 6 0.4169 2.7658 -5.1847 21 9 -0.5368 3.6809 -5.4648 22 6 1.0263 2.7587 -3.9412 23 6 3.7542 2.9024 -2.2681 24 9 4.3737 2.8981 -1.0138 25 9 4.7072 2.6441 -3.2593 26 9 3.1711 4.1535 -2.4960 27 1 -0.3633 -1.0274 -0.0231 28 1 -0.3633 0.4938 0.9013 29 1 -0.3633 0.5336 -0.8782 30 1 1.8934 -0.5139 0.8899 31 1 1.8934 -0.5139 -0.8900 32 1 2.5117 0.4045 3.5866 33 1 0.7522 1.8056 -1.5645 34 1 3.1310 0.1610 -4.3870 35 1 2.0421 0.1662 -6.5947 36 1 0.3049 1.8340 -7.1076 37 1 0.7392 3.4844 -3.1947 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255153427.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:53:54 Heat of formation + Delta-G solvation = -176.334287 kcal Electronic energy + Delta-G solvation = -26266.936637 eV Core-core repulsion = 21929.446489 eV Total energy + Delta-G solvation = -4337.490148 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.51453 -48.87729 -47.07076 -46.91851 -39.41708 -36.79777 -33.69202 -31.52569 -30.64085 -29.93349 -27.59050 -25.87688 -23.64515 -23.45002 -22.54414 -21.17473 -19.55580 -18.16698 -18.01009 -17.36507 -16.75535 -16.27858 -16.15063 -15.95507 -15.56049 -14.84648 -14.82690 -14.01608 -13.87965 -13.81430 -13.67265 -13.42172 -13.23355 -13.18627 -13.12057 -12.93219 -12.80188 -12.46005 -12.29302 -12.07078 -11.79112 -11.46961 -11.11288 -10.91786 -10.76766 -10.61334 -10.15231 -9.95829 -9.67657 -9.15483 -9.03755 -8.76040 -8.39495 -7.70427 -6.03546 -4.05140 0.99153 1.14098 3.19451 3.32758 3.37171 3.40570 3.54732 4.06451 4.21544 4.34251 4.41705 4.56407 4.74740 4.87451 5.01225 5.08297 5.27714 5.29408 5.39830 5.51228 5.70705 5.95323 6.05203 6.16861 6.22869 6.25356 6.36786 6.44475 6.75453 6.80456 6.98981 7.10137 7.38902 7.53030 7.76074 8.07696 8.20968 8.40859 8.98130 9.58088 11.03927 Molecular weight = 305.11amu Principal moments of inertia in cm(-1) A = 0.016608 B = 0.005124 C = 0.004722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.528742 B = 5463.317058 C = 5927.919922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.146 4.146 3 C 0.207 3.793 4 H 0.048 0.952 5 C -0.491 4.491 6 H 0.063 0.937 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.896 3.104 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.277 1.277 13 N -0.666 5.666 14 C 0.085 3.915 15 H 0.094 0.906 16 C -0.072 4.072 17 C -0.108 4.108 18 C -0.095 4.095 19 C -0.149 4.149 20 C 0.094 3.906 21 F -0.139 7.139 22 C -0.120 4.120 23 C 0.461 3.539 24 F -0.169 7.169 25 F -0.195 7.195 26 F -0.177 7.177 27 H 0.024 0.976 28 H 0.068 0.932 29 H 0.028 0.972 30 H 0.097 0.903 31 H 0.011 0.989 32 H 0.261 0.739 33 H 0.347 0.653 34 H 0.132 0.868 35 H 0.134 0.866 36 H 0.134 0.866 37 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.275 -0.982 -15.318 15.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.186 4.186 3 C 0.101 3.899 4 H 0.065 0.935 5 C -0.529 4.529 6 H 0.081 0.919 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.724 3.276 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.203 1.203 13 N -0.300 5.300 14 C -0.028 4.028 15 H 0.111 0.889 16 C -0.073 4.073 17 C -0.127 4.127 18 C -0.113 4.113 19 C -0.168 4.168 20 C 0.075 3.925 21 F -0.118 7.118 22 C -0.139 4.139 23 C 0.405 3.595 24 F -0.150 7.150 25 F -0.176 7.176 26 F -0.159 7.159 27 H 0.043 0.957 28 H 0.087 0.913 29 H 0.047 0.953 30 H 0.115 0.885 31 H 0.029 0.971 32 H 0.071 0.929 33 H 0.169 0.831 34 H 0.150 0.850 35 H 0.152 0.848 36 H 0.152 0.848 37 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 0.033 -0.423 -14.963 14.969 hybrid contribution -0.541 -0.162 0.613 0.834 sum -0.508 -0.585 -14.350 14.371 Atomic orbital electron populations 1.21566 0.97437 0.98236 1.01323 1.22135 0.95273 1.00659 1.00490 1.19533 0.97260 0.88903 0.84250 0.93463 1.20886 1.30906 1.11697 0.89447 0.91886 1.24866 0.95420 0.95120 0.98658 1.69853 1.38927 1.23988 1.20573 0.86594 0.79558 0.80090 0.81373 1.20363 1.21479 1.20264 1.60831 1.03203 1.63317 1.02621 1.21356 0.94349 0.95766 0.91295 0.88879 1.19529 0.96875 0.96139 0.94713 1.21148 0.99929 0.98552 0.93069 1.20929 0.95559 0.98112 0.96737 1.21177 0.99998 0.96089 0.99577 1.17661 0.90156 0.89947 0.94743 1.91505 1.61568 1.64737 1.93998 1.21200 0.96491 1.00188 0.95991 1.20563 0.82226 0.83345 0.73317 1.93223 1.83936 1.96524 1.41327 1.93122 1.67347 1.94126 1.63044 1.93137 1.84029 1.44424 1.94286 0.95683 0.91272 0.95308 0.88485 0.97054 0.92929 0.83062 0.85031 0.84825 0.84829 0.83131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.56 9.39 37.16 0.35 -2.21 16 2 C -0.15 -3.16 5.47 -26.73 -0.15 -3.31 16 3 C 0.21 4.76 1.92 -68.87 -0.13 4.63 16 4 H 0.05 1.21 6.30 -51.93 -0.33 0.88 16 5 C -0.49 -12.68 7.35 -34.44 -0.25 -12.93 16 6 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 7 C 0.06 1.60 5.22 -17.82 -0.09 1.50 16 8 N -0.89 -24.34 11.39 55.43 0.63 -23.71 16 9 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 N -0.67 -12.87 5.40 -102.17 -0.55 -13.42 16 14 C 0.09 1.42 2.14 -68.86 -0.15 1.27 16 15 H 0.09 1.51 7.03 -51.93 -0.36 1.15 16 16 C -0.07 -1.02 4.39 -104.63 -0.46 -1.48 16 17 C -0.11 -1.27 9.67 -39.58 -0.38 -1.65 16 18 C -0.10 -0.95 10.04 -39.59 -0.40 -1.35 16 19 C -0.15 -1.60 10.03 -39.51 -0.40 -2.00 16 20 C 0.09 1.23 7.30 -39.42 -0.29 0.94 16 21 F -0.14 -1.91 17.27 2.25 0.04 -1.87 16 22 C -0.12 -1.71 8.13 -39.52 -0.32 -2.04 16 23 C 0.46 8.21 2.82 37.16 0.10 8.31 16 24 F -0.17 -3.47 15.47 2.25 0.03 -3.44 16 25 F -0.19 -3.15 17.03 2.25 0.04 -3.12 16 26 F -0.18 -3.26 16.21 2.25 0.04 -3.22 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.07 1.54 7.03 -51.93 -0.37 1.17 16 29 H 0.03 0.52 6.43 -51.93 -0.33 0.18 16 30 H 0.10 2.39 6.25 -51.93 -0.32 2.07 16 31 H 0.01 0.21 7.49 -51.93 -0.39 -0.18 16 32 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 33 H 0.35 6.35 5.64 -39.29 -0.22 6.13 16 34 H 0.13 1.32 8.04 -52.48 -0.42 0.90 16 35 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 36 H 0.13 1.12 8.06 -52.48 -0.42 0.69 16 37 H 0.15 2.30 7.58 -52.49 -0.40 1.90 16 LS Contribution 319.66 15.07 4.82 4.82 Total: -1.00 -27.11 319.66 -6.50 -33.61 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -3.96 Total: 4.74 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: -2.56 Total: -10.32 kcal Atomic # 7 Polarization: -37.20 SS G_CDS: 0.08 Total: -37.12 kcal Atomic # 9 Polarization: -11.79 SS G_CDS: 0.15 Total: -11.65 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -27.11 -6.50 -33.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255153427.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.726 kcal (2) G-P(sol) polarization free energy of solvation -27.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds