Wall clock time and date at job start Tue Mar 31 2020 08:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47329 * 2 1 4 4 H 1.09000 * 109.47253 * 174.00117 * 3 2 1 5 5 C 1.50696 * 109.47342 * 54.00152 * 3 2 1 6 6 H 1.08003 * 119.99888 * 240.00384 * 5 3 2 7 7 C 1.37873 * 120.00006 * 59.99821 * 5 3 2 8 8 N 1.31511 * 120.00151 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99910 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47233 * 60.00332 * 9 7 5 11 11 H 1.48504 * 109.47179 * 179.97438 * 9 7 5 12 12 H 1.48491 * 109.47361 * 299.99846 * 9 7 5 13 13 N 1.46899 * 109.47217 * 293.99833 * 3 2 1 14 14 C 1.46904 * 111.00395 * 274.32047 * 13 3 2 15 15 H 1.09003 * 109.46820 * 30.36204 * 14 13 3 16 16 C 1.50699 * 109.47238 * 150.35790 * 14 13 3 17 17 C 1.38269 * 119.98888 * 220.00434 * 16 14 13 18 18 C 1.38220 * 120.05276 * 180.02562 * 17 16 14 19 19 C 1.38221 * 120.02323 * 359.97438 * 18 17 16 20 20 C 1.38436 * 119.97432 * 359.97438 * 19 18 17 21 21 F 1.35109 * 120.02379 * 180.02562 * 20 19 18 22 22 C 1.38180 * 119.98569 * 39.73081 * 16 14 13 23 23 C 1.53000 * 109.47245 * 270.36374 * 14 13 3 24 24 F 1.39900 * 109.47213 * 59.99665 * 23 14 13 25 25 F 1.39899 * 109.47126 * 179.97438 * 23 14 13 26 26 F 1.39899 * 109.46795 * 299.99463 * 23 14 13 27 27 H 1.09002 * 109.47182 * 178.71406 * 1 2 3 28 28 H 1.09003 * 109.46686 * 298.71727 * 1 2 3 29 29 H 1.08996 * 109.46995 * 58.71674 * 1 2 3 30 30 H 1.08998 * 109.47570 * 120.00380 * 2 1 3 31 31 H 1.09004 * 109.47310 * 239.99893 * 2 1 3 32 32 H 0.96997 * 120.00462 * 179.97438 * 8 7 5 33 33 H 1.00897 * 111.00003 * 38.27945 * 13 3 2 34 34 H 1.08003 * 119.96912 * 359.97372 * 17 16 14 35 35 H 1.08000 * 119.98622 * 180.02562 * 18 17 16 36 36 H 1.08003 * 120.01253 * 180.02562 * 19 18 17 37 37 H 1.08001 * 120.01290 * 359.97438 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1247 1.4443 0.1074 5 6 1.4202 2.1944 1.1494 6 1 0.8136 3.0675 0.9591 7 6 1.6274 1.7679 2.4440 8 7 2.3656 0.7044 2.6758 9 14 0.8585 2.6997 3.8688 10 1 -0.6192 2.6966 3.7224 11 1 1.2300 2.0429 5.1479 12 1 1.3530 4.0998 3.8690 13 7 1.6722 2.0919 -1.2653 14 6 2.6726 1.8210 -2.3064 15 1 3.1269 0.8462 -2.1289 16 6 2.0052 1.8256 -3.6576 17 6 2.3686 0.8925 -4.6110 18 6 1.7578 0.8958 -5.8509 19 6 0.7823 1.8318 -6.1388 20 6 0.4169 2.7658 -5.1847 21 9 -0.5368 3.6809 -5.4648 22 6 1.0263 2.7587 -3.9412 23 6 3.7542 2.9024 -2.2681 24 9 4.3737 2.8981 -1.0138 25 9 4.7072 2.6441 -3.2593 26 9 3.1711 4.1535 -2.4960 27 1 -0.3633 -1.0274 -0.0231 28 1 -0.3633 0.4938 0.9013 29 1 -0.3633 0.5336 -0.8782 30 1 1.8934 -0.5139 0.8899 31 1 1.8934 -0.5139 -0.8900 32 1 2.5117 0.4045 3.5866 33 1 0.7522 1.8056 -1.5645 34 1 3.1310 0.1610 -4.3870 35 1 2.0421 0.1662 -6.5947 36 1 0.3049 1.8340 -7.1076 37 1 0.7392 3.4844 -3.1947 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255153427.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:53:53 Heat of formation + Delta-G solvation = -190.288715 kcal Electronic energy + Delta-G solvation = -26267.541747 eV Core-core repulsion = 21929.446489 eV Total energy + Delta-G solvation = -4338.095257 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.110 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.96721 -49.88110 -48.49803 -48.42897 -40.46454 -38.32384 -35.24543 -33.27570 -31.58319 -31.25621 -29.04615 -27.67327 -25.32791 -24.69457 -23.56342 -22.38303 -21.29883 -19.52754 -19.44461 -18.64127 -18.23041 -17.70502 -17.28584 -17.06888 -16.71012 -16.57280 -16.24911 -15.50505 -15.31722 -15.25730 -14.88918 -14.81901 -14.71741 -14.61485 -14.47787 -14.40052 -14.21212 -13.93240 -13.67988 -13.45175 -12.96229 -12.77587 -12.66609 -12.61649 -12.44266 -12.13186 -11.91616 -11.68942 -11.42086 -11.00082 -10.40806 -10.03525 -9.71129 -9.29716 -8.05451 -6.11979 0.04263 0.21243 1.44318 1.45697 1.52205 1.85060 2.44352 2.54769 2.84732 2.93105 3.12901 3.25263 3.33547 3.60744 3.78282 3.92940 4.11363 4.15821 4.24250 4.43535 4.54250 4.60232 4.73346 4.79438 5.06788 5.09282 5.12395 5.24197 5.31031 5.39348 5.44145 5.69778 5.75625 5.77025 5.89246 6.25728 6.52156 6.58278 6.95543 7.54122 9.00145 Molecular weight = 305.11amu Principal moments of inertia in cm(-1) A = 0.016608 B = 0.005124 C = 0.004722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.528742 B = 5463.317058 C = 5927.919922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.139 4.139 3 C 0.215 3.785 4 H 0.018 0.982 5 C -0.500 4.500 6 H 0.051 0.949 7 C 0.020 3.980 8 N -0.916 5.916 9 Si 0.946 3.054 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.280 1.280 13 N -0.671 5.671 14 C 0.093 3.907 15 H 0.099 0.901 16 C -0.088 4.088 17 C -0.107 4.107 18 C -0.082 4.082 19 C -0.138 4.138 20 C 0.078 3.922 21 F -0.148 7.148 22 C -0.135 4.135 23 C 0.457 3.543 24 F -0.190 7.190 25 F -0.183 7.183 26 F -0.183 7.183 27 H 0.044 0.956 28 H 0.041 0.959 29 H 0.046 0.954 30 H 0.065 0.935 31 H 0.034 0.966 32 H 0.259 0.741 33 H 0.353 0.647 34 H 0.151 0.849 35 H 0.175 0.825 36 H 0.163 0.837 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.777 -2.066 -17.671 17.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.178 4.178 3 C 0.107 3.893 4 H 0.036 0.964 5 C -0.539 4.539 6 H 0.069 0.931 7 C -0.179 4.179 8 N -0.556 5.556 9 Si 0.773 3.227 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.206 1.206 13 N -0.305 5.305 14 C -0.020 4.020 15 H 0.117 0.883 16 C -0.089 4.089 17 C -0.125 4.125 18 C -0.100 4.100 19 C -0.156 4.156 20 C 0.059 3.941 21 F -0.127 7.127 22 C -0.154 4.154 23 C 0.402 3.598 24 F -0.171 7.171 25 F -0.165 7.165 26 F -0.165 7.165 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.084 0.916 31 H 0.053 0.947 32 H 0.068 0.932 33 H 0.176 0.824 34 H 0.168 0.832 35 H 0.192 0.808 36 H 0.181 0.819 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.479 -1.499 -17.330 17.401 hybrid contribution -0.350 0.195 1.228 1.292 sum -0.829 -1.304 -16.101 16.175 Atomic orbital electron populations 1.21452 0.96058 0.99452 1.00751 1.21970 0.96423 0.99427 1.00024 1.19227 0.95169 0.89699 0.85188 0.96391 1.21136 1.30528 1.11432 0.90797 0.93118 1.25463 0.95954 0.95843 1.00641 1.69969 1.39939 1.24995 1.20689 0.85800 0.79110 0.78722 0.79083 1.19703 1.21231 1.20628 1.60556 1.04201 1.63288 1.02429 1.21305 0.93380 0.95221 0.92094 0.88297 1.19345 0.97699 0.97791 0.94024 1.21441 1.00106 0.97857 0.93133 1.21373 0.94036 0.97989 0.96555 1.21564 0.99409 0.94666 0.99967 1.17851 0.90483 0.90807 0.95007 1.91482 1.61944 1.65247 1.93997 1.21063 0.97505 1.00384 0.96476 1.20821 0.82662 0.83577 0.72737 1.93183 1.84409 1.96626 1.42913 1.93132 1.66973 1.94019 1.62337 1.93122 1.84137 1.44957 1.94251 0.93650 0.94011 0.93527 0.91611 0.94715 0.93166 0.82363 0.83153 0.80791 0.81937 0.85232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.67 9.39 71.98 0.68 -4.00 16 2 C -0.14 -5.98 5.47 30.59 0.17 -5.81 16 3 C 0.21 10.02 1.92 44.17 0.08 10.10 16 4 H 0.02 0.95 6.30 -2.39 -0.02 0.94 16 5 C -0.50 -26.40 7.35 25.60 0.19 -26.21 16 6 H 0.05 2.74 7.81 -2.91 -0.02 2.72 16 7 C 0.02 1.06 5.22 84.65 0.44 1.50 16 8 N -0.92 -50.86 11.39 21.45 0.24 -50.61 16 9 Si 0.95 43.52 29.54 68.60 2.03 45.55 16 10 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 11 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 12 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 13 N -0.67 -26.08 5.40 -477.17 -2.57 -28.66 16 14 C 0.09 3.04 2.14 44.17 0.09 3.13 16 15 H 0.10 3.12 7.03 -2.39 -0.02 3.10 16 16 C -0.09 -2.36 4.39 -19.87 -0.09 -2.45 16 17 C -0.11 -2.14 9.67 22.27 0.22 -1.93 16 18 C -0.08 -1.25 10.04 22.26 0.22 -1.02 16 19 C -0.14 -2.42 10.03 22.31 0.22 -2.20 16 20 C 0.08 1.90 7.30 22.37 0.16 2.06 16 21 F -0.15 -3.90 17.27 44.97 0.78 -3.13 16 22 C -0.14 -3.78 8.13 22.31 0.18 -3.60 16 23 C 0.46 16.33 2.82 71.98 0.20 16.54 16 24 F -0.19 -8.01 15.47 44.97 0.70 -7.32 16 25 F -0.18 -5.77 17.03 44.97 0.77 -5.00 16 26 F -0.18 -6.83 16.21 44.97 0.73 -6.11 16 27 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.04 1.84 7.03 -2.39 -0.02 1.83 16 29 H 0.05 1.62 6.43 -2.39 -0.02 1.61 16 30 H 0.07 3.28 6.25 -2.39 -0.01 3.27 16 31 H 0.03 1.30 7.49 -2.38 -0.02 1.28 16 32 H 0.26 13.93 8.31 -92.71 -0.77 13.16 16 33 H 0.35 12.85 5.64 -89.70 -0.51 12.35 16 34 H 0.15 2.42 8.04 -2.91 -0.02 2.40 16 35 H 0.17 1.31 8.06 -2.91 -0.02 1.29 16 36 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16 37 H 0.13 4.08 7.58 -2.91 -0.02 4.06 16 Total: -1.00 -59.75 319.66 6.05 -53.70 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: 0.61 Total: 15.44 kcal Atomic # 6 Polarization: -16.65 SS G_CDS: 2.78 Total: -13.87 kcal Atomic # 7 Polarization: -76.94 SS G_CDS: -2.33 Total: -79.27 kcal Atomic # 9 Polarization: -24.52 SS G_CDS: 2.97 Total: -21.55 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -59.75 6.05 -53.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255153427.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.586 kcal (2) G-P(sol) polarization free energy of solvation -59.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds