Wall clock time and date at job start Tue Mar 31 2020 08:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.46938 * 2 1 4 4 H 1.09006 * 109.47238 * 179.09951 * 3 2 1 5 5 C 1.50705 * 109.47417 * 299.09953 * 3 2 1 6 6 H 1.07997 * 119.99308 * 119.99899 * 5 3 2 7 7 C 1.37873 * 119.99958 * 300.00269 * 5 3 2 8 8 N 1.31514 * 119.99949 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 120.00134 * 359.97438 * 7 5 3 10 10 H 1.48500 * 109.46991 * 90.00220 * 9 7 5 11 11 H 1.48498 * 109.47150 * 210.00366 * 9 7 5 12 12 H 1.48498 * 109.47091 * 329.99989 * 9 7 5 13 13 N 1.46899 * 109.47252 * 59.10484 * 3 2 1 14 14 C 1.46894 * 111.00511 * 86.57758 * 13 3 2 15 15 H 1.09003 * 109.47182 * 331.07094 * 14 13 3 16 16 C 1.50695 * 109.47722 * 211.06966 * 14 13 3 17 17 C 1.38271 * 119.98292 * 319.72379 * 16 14 13 18 18 C 1.38224 * 120.05039 * 179.72572 * 17 16 14 19 19 C 1.38222 * 120.02283 * 0.54916 * 18 17 16 20 20 C 1.38435 * 119.97428 * 359.72628 * 19 18 17 21 21 F 1.35103 * 120.02468 * 180.02562 * 20 19 18 22 22 C 1.38173 * 119.99418 * 139.99938 * 16 14 13 23 23 C 1.53003 * 109.47048 * 91.06388 * 14 13 3 24 24 F 1.39907 * 109.46893 * 60.00381 * 23 14 13 25 25 F 1.39898 * 109.47310 * 179.97438 * 23 14 13 26 26 F 1.39898 * 109.47229 * 300.00704 * 23 14 13 27 27 H 1.09000 * 109.46997 * 175.79162 * 1 2 3 28 28 H 1.09005 * 109.46976 * 295.78985 * 1 2 3 29 29 H 1.08998 * 109.47474 * 55.78941 * 1 2 3 30 30 H 1.09001 * 109.47249 * 240.00548 * 2 1 3 31 31 H 1.08994 * 109.47537 * 120.00182 * 2 1 3 32 32 H 0.96996 * 120.00287 * 179.97438 * 8 7 5 33 33 H 1.00897 * 111.00214 * 210.53688 * 13 3 2 34 34 H 1.08002 * 119.97660 * 359.97438 * 17 16 14 35 35 H 1.07993 * 119.98639 * 180.27747 * 18 17 16 36 36 H 1.07999 * 120.00863 * 179.70837 * 19 18 17 37 37 H 1.08004 * 120.00933 * 0.02562 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1298 1.4426 0.0162 5 6 1.5559 2.1465 -1.2415 6 1 0.9336 3.0250 -1.1561 7 6 1.9074 1.6689 -2.4862 8 7 1.4846 2.2830 -3.5696 9 14 2.9843 0.1497 -2.6337 10 1 2.1268 -1.0616 -2.6854 11 1 3.7945 0.2360 -3.8752 12 1 3.8875 0.0671 -1.4580 13 7 1.5326 2.1412 1.1884 14 6 2.4193 1.9321 2.3407 15 1 2.9198 0.9686 2.2439 16 6 1.6070 1.9508 3.6098 17 6 0.5817 2.8661 3.7605 18 6 -0.1680 2.8808 4.9217 19 6 0.1139 1.9877 5.9382 20 6 1.1439 1.0745 5.7908 21 9 1.4200 0.2007 6.7835 22 6 1.8906 1.0570 4.6247 23 6 3.4655 3.0475 2.3883 24 9 2.8232 4.2842 2.5126 25 9 4.3097 2.8487 3.4860 26 9 4.2197 3.0301 1.2101 27 1 -0.3633 -1.0249 -0.0754 28 1 -0.3633 0.4471 0.9253 29 1 -0.3634 0.5778 -0.8498 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.7322 1.9473 -4.4452 33 1 1.4064 3.1250 1.0032 34 1 0.3638 3.5676 2.9687 35 1 -0.9715 3.5932 5.0365 36 1 -0.4690 2.0024 6.8473 37 1 2.6946 0.3453 4.5088 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255153428.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:53:55 Heat of formation + Delta-G solvation = -170.295116 kcal Electronic energy + Delta-G solvation = -26304.031972 eV Core-core repulsion = 21966.803702 eV Total energy + Delta-G solvation = -4337.228270 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.87104 -48.92724 -47.38137 -47.31985 -39.35120 -36.92489 -33.76911 -31.84227 -30.91845 -30.09576 -27.88666 -26.07429 -23.69747 -23.36445 -22.71866 -21.22944 -19.69893 -18.35253 -18.21743 -17.75155 -17.30388 -16.37740 -16.29748 -16.08861 -15.61281 -15.35772 -14.49684 -14.34015 -14.02566 -13.85578 -13.76605 -13.73444 -13.57905 -13.46904 -13.34265 -13.22355 -12.94622 -12.70015 -12.45543 -12.21479 -11.93089 -11.55540 -11.22633 -11.14839 -10.78977 -10.66761 -10.37138 -10.14356 -9.44877 -9.16689 -9.04361 -8.70977 -8.68408 -8.04371 -6.19388 -4.19975 1.03891 1.16795 2.94500 3.20586 3.29822 3.32316 3.53508 3.88972 4.10834 4.21129 4.29949 4.30806 4.61683 4.74072 4.86207 5.00452 5.15184 5.19289 5.26647 5.34146 5.70273 5.97923 6.00924 6.01982 6.06201 6.26637 6.31151 6.42090 6.54906 6.74798 6.82442 6.93281 7.05023 7.32479 7.38621 7.52809 7.89298 8.39412 8.82002 9.41157 10.93030 Molecular weight = 305.11amu Principal moments of inertia in cm(-1) A = 0.017813 B = 0.005269 C = 0.004812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.476021 B = 5312.621667 C = 5817.801473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.115 4.115 3 C 0.177 3.823 4 H 0.017 0.983 5 C -0.518 4.518 6 H 0.081 0.919 7 C 0.079 3.921 8 N -0.892 5.892 9 Si 0.883 3.117 10 H -0.276 1.276 11 H -0.296 1.296 12 H -0.267 1.267 13 N -0.645 5.645 14 C 0.088 3.912 15 H 0.122 0.878 16 C -0.050 4.050 17 C -0.086 4.086 18 C -0.095 4.095 19 C -0.150 4.150 20 C 0.091 3.909 21 F -0.143 7.143 22 C -0.134 4.134 23 C 0.419 3.581 24 F -0.181 7.181 25 F -0.189 7.189 26 F -0.172 7.172 27 H 0.022 0.978 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.046 0.954 31 H 0.031 0.969 32 H 0.266 0.734 33 H 0.352 0.648 34 H 0.137 0.863 35 H 0.134 0.866 36 H 0.133 0.867 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.078 -0.496 16.451 16.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.153 4.153 3 C 0.069 3.931 4 H 0.034 0.966 5 C -0.556 4.556 6 H 0.099 0.901 7 C -0.124 4.124 8 N -0.530 5.530 9 Si 0.713 3.287 10 H -0.203 1.203 11 H -0.223 1.223 12 H -0.193 1.193 13 N -0.277 5.277 14 C -0.026 4.026 15 H 0.140 0.860 16 C -0.051 4.051 17 C -0.105 4.105 18 C -0.113 4.113 19 C -0.169 4.169 20 C 0.072 3.928 21 F -0.121 7.121 22 C -0.154 4.154 23 C 0.363 3.637 24 F -0.163 7.163 25 F -0.171 7.171 26 F -0.154 7.154 27 H 0.041 0.959 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.064 0.936 31 H 0.050 0.950 32 H 0.076 0.924 33 H 0.174 0.826 34 H 0.155 0.845 35 H 0.152 0.848 36 H 0.151 0.849 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.491 -0.996 16.408 16.446 hybrid contribution 1.587 -0.342 -0.327 1.656 sum 1.097 -1.338 16.081 16.174 Atomic orbital electron populations 1.21473 0.95268 0.98619 1.02964 1.21792 0.97709 0.97653 0.98149 1.19879 0.93924 0.91473 0.87854 0.96554 1.20864 1.33101 1.13494 0.88100 0.90110 1.24832 0.95280 0.96696 0.95641 1.69864 1.44922 1.40283 0.97896 0.86916 0.80893 0.83721 0.77163 1.20264 1.22337 1.19257 1.60721 1.44110 1.18169 1.04682 1.21858 0.90401 0.96758 0.93541 0.86019 1.19246 0.96904 0.95973 0.92951 1.21136 0.93905 0.97971 0.97451 1.21009 0.99404 0.98177 0.92689 1.21153 0.98076 0.96622 1.01010 1.17538 0.97714 0.91270 0.86289 1.91488 1.93262 1.67480 1.59898 1.20947 1.00945 1.00948 0.92511 1.21992 0.83243 0.84889 0.73614 1.93146 1.81350 1.46157 1.95624 1.93152 1.73782 1.95011 1.55146 1.93243 1.77862 1.96579 1.47683 0.95909 0.92696 0.91188 0.93601 0.95001 0.92412 0.82574 0.84529 0.84806 0.84927 0.84712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.47 9.52 37.15 0.35 -2.11 16 2 C -0.12 -2.36 5.28 -26.74 -0.14 -2.50 16 3 C 0.18 3.78 1.47 -68.86 -0.10 3.68 16 4 H 0.02 0.38 5.48 -51.93 -0.28 0.09 16 5 C -0.52 -13.28 7.88 -34.44 -0.27 -13.56 16 6 H 0.08 2.24 7.84 -52.49 -0.41 1.83 16 7 C 0.08 2.14 5.45 -17.82 -0.10 2.04 16 8 N -0.89 -25.97 13.96 55.43 0.77 -25.19 16 9 Si 0.88 21.11 24.38 -169.99 -4.14 16.96 16 10 H -0.28 -6.45 6.86 56.52 0.39 -6.06 16 11 H -0.30 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.27 -6.14 6.53 56.52 0.37 -5.77 16 13 N -0.65 -11.48 4.69 -102.17 -0.48 -11.96 16 14 C 0.09 1.35 2.17 -68.87 -0.15 1.20 16 15 H 0.12 1.81 7.10 -51.93 -0.37 1.44 16 16 C -0.05 -0.68 4.63 -104.64 -0.48 -1.16 16 17 C -0.09 -1.09 8.56 -39.57 -0.34 -1.42 16 18 C -0.09 -1.00 10.04 -39.59 -0.40 -1.40 16 19 C -0.15 -1.60 10.03 -39.51 -0.40 -2.00 16 20 C 0.09 1.12 7.30 -39.42 -0.29 0.83 16 21 F -0.14 -1.80 17.27 2.25 0.04 -1.76 16 22 C -0.13 -1.71 9.65 -39.52 -0.38 -2.09 16 23 C 0.42 6.64 2.71 37.16 0.10 6.74 16 24 F -0.18 -2.83 15.52 2.25 0.03 -2.80 16 25 F -0.19 -2.85 17.02 2.25 0.04 -2.82 16 26 F -0.17 -3.15 15.62 2.25 0.04 -3.12 16 27 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 1.01 7.72 -51.93 -0.40 0.61 16 29 H 0.07 1.54 7.10 -51.93 -0.37 1.18 16 30 H 0.05 1.01 3.26 -51.93 -0.17 0.84 16 31 H 0.03 0.58 7.65 -51.93 -0.40 0.18 16 32 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 33 H 0.35 6.37 6.90 -39.29 -0.27 6.10 16 34 H 0.14 1.70 7.31 -52.49 -0.38 1.32 16 35 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 36 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 37 H 0.13 1.54 8.04 -52.48 -0.42 1.12 16 LS Contribution 314.59 15.07 4.74 4.74 Total: -1.00 -27.80 314.59 -5.48 -33.28 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -3.93 Total: 4.41 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: -2.59 Total: -11.75 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: 0.29 Total: -37.15 kcal Atomic # 9 Polarization: -10.64 SS G_CDS: 0.15 Total: -10.49 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.14 Total: 16.96 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -27.80 -5.48 -33.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255153428.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.017 kcal (2) G-P(sol) polarization free energy of solvation -27.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds