Wall clock time and date at job start Tue Mar 31 2020 08:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.46938 * 2 1 4 4 H 1.09006 * 109.47238 * 179.09951 * 3 2 1 5 5 C 1.50705 * 109.47417 * 299.09953 * 3 2 1 6 6 H 1.07997 * 119.99308 * 119.99899 * 5 3 2 7 7 C 1.37873 * 119.99958 * 300.00269 * 5 3 2 8 8 N 1.31514 * 119.99949 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 120.00134 * 359.97438 * 7 5 3 10 10 H 1.48500 * 109.46991 * 90.00220 * 9 7 5 11 11 H 1.48498 * 109.47150 * 210.00366 * 9 7 5 12 12 H 1.48498 * 109.47091 * 329.99989 * 9 7 5 13 13 N 1.46899 * 109.47252 * 59.10484 * 3 2 1 14 14 C 1.46894 * 111.00511 * 86.57758 * 13 3 2 15 15 H 1.09003 * 109.47182 * 331.07094 * 14 13 3 16 16 C 1.50695 * 109.47722 * 211.06966 * 14 13 3 17 17 C 1.38271 * 119.98292 * 319.72379 * 16 14 13 18 18 C 1.38224 * 120.05039 * 179.72572 * 17 16 14 19 19 C 1.38222 * 120.02283 * 0.54916 * 18 17 16 20 20 C 1.38435 * 119.97428 * 359.72628 * 19 18 17 21 21 F 1.35103 * 120.02468 * 180.02562 * 20 19 18 22 22 C 1.38173 * 119.99418 * 139.99938 * 16 14 13 23 23 C 1.53003 * 109.47048 * 91.06388 * 14 13 3 24 24 F 1.39907 * 109.46893 * 60.00381 * 23 14 13 25 25 F 1.39898 * 109.47310 * 179.97438 * 23 14 13 26 26 F 1.39898 * 109.47229 * 300.00704 * 23 14 13 27 27 H 1.09000 * 109.46997 * 175.79162 * 1 2 3 28 28 H 1.09005 * 109.46976 * 295.78985 * 1 2 3 29 29 H 1.08998 * 109.47474 * 55.78941 * 1 2 3 30 30 H 1.09001 * 109.47249 * 240.00548 * 2 1 3 31 31 H 1.08994 * 109.47537 * 120.00182 * 2 1 3 32 32 H 0.96996 * 120.00287 * 179.97438 * 8 7 5 33 33 H 1.00897 * 111.00214 * 210.53688 * 13 3 2 34 34 H 1.08002 * 119.97660 * 359.97438 * 17 16 14 35 35 H 1.07993 * 119.98639 * 180.27747 * 18 17 16 36 36 H 1.07999 * 120.00863 * 179.70837 * 19 18 17 37 37 H 1.08004 * 120.00933 * 0.02562 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1298 1.4426 0.0162 5 6 1.5559 2.1465 -1.2415 6 1 0.9336 3.0250 -1.1561 7 6 1.9074 1.6689 -2.4862 8 7 1.4846 2.2830 -3.5696 9 14 2.9843 0.1497 -2.6337 10 1 2.1268 -1.0616 -2.6854 11 1 3.7945 0.2360 -3.8752 12 1 3.8875 0.0671 -1.4580 13 7 1.5326 2.1412 1.1884 14 6 2.4193 1.9321 2.3407 15 1 2.9198 0.9686 2.2439 16 6 1.6070 1.9508 3.6098 17 6 0.5817 2.8661 3.7605 18 6 -0.1680 2.8808 4.9217 19 6 0.1139 1.9877 5.9382 20 6 1.1439 1.0745 5.7908 21 9 1.4200 0.2007 6.7835 22 6 1.8906 1.0570 4.6247 23 6 3.4655 3.0475 2.3883 24 9 2.8232 4.2842 2.5126 25 9 4.3097 2.8487 3.4860 26 9 4.2197 3.0301 1.2101 27 1 -0.3633 -1.0249 -0.0754 28 1 -0.3633 0.4471 0.9253 29 1 -0.3634 0.5778 -0.8498 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.7322 1.9473 -4.4452 33 1 1.4064 3.1250 1.0032 34 1 0.3638 3.5676 2.9687 35 1 -0.9715 3.5932 5.0365 36 1 -0.4690 2.0024 6.8473 37 1 2.6946 0.3453 4.5088 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255153428.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:53:55 Heat of formation + Delta-G solvation = -185.916751 kcal Electronic energy + Delta-G solvation = -26304.709377 eV Core-core repulsion = 21966.803702 eV Total energy + Delta-G solvation = -4337.905675 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.110 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -51.16580 -49.85920 -48.66678 -48.63508 -40.36298 -38.39250 -35.27359 -33.69768 -31.99217 -31.17926 -29.29665 -27.74189 -25.07254 -24.84093 -23.68922 -22.38426 -21.32527 -19.65430 -19.49179 -19.03841 -18.72225 -17.88657 -17.35203 -17.04518 -16.98955 -16.54267 -15.89823 -15.62257 -15.37257 -15.25023 -15.12950 -15.05948 -14.83292 -14.78005 -14.74656 -14.68445 -14.39929 -14.00099 -13.75096 -13.46211 -13.21235 -12.85149 -12.59236 -12.54324 -12.40532 -12.16472 -12.08065 -11.80523 -11.26211 -10.98973 -10.70685 -9.99306 -9.64276 -9.54865 -8.29014 -6.31469 0.10259 0.25798 1.30887 1.35806 1.43631 1.71298 2.31277 2.52319 2.68562 2.88667 2.96778 3.09068 3.24737 3.45048 3.71759 3.79779 4.07776 4.14672 4.27614 4.33781 4.43024 4.46417 4.68513 4.83330 4.89215 5.09565 5.14628 5.15369 5.30628 5.34880 5.37997 5.48759 5.60642 5.76276 5.81851 5.93530 6.22690 6.43032 6.74854 7.32850 8.86957 Molecular weight = 305.11amu Principal moments of inertia in cm(-1) A = 0.017813 B = 0.005269 C = 0.004812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.476021 B = 5312.621667 C = 5817.801473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.117 4.117 3 C 0.182 3.818 4 H 0.011 0.989 5 C -0.507 4.507 6 H 0.047 0.953 7 C 0.025 3.975 8 N -0.942 5.942 9 Si 0.934 3.066 10 H -0.265 1.265 11 H -0.303 1.303 12 H -0.250 1.250 13 N -0.640 5.640 14 C 0.094 3.906 15 H 0.130 0.870 16 C -0.064 4.064 17 C -0.098 4.098 18 C -0.089 4.089 19 C -0.141 4.141 20 C 0.079 3.921 21 F -0.146 7.146 22 C -0.139 4.139 23 C 0.420 3.580 24 F -0.181 7.181 25 F -0.182 7.182 26 F -0.189 7.189 27 H 0.043 0.957 28 H 0.065 0.935 29 H 0.036 0.964 30 H 0.033 0.967 31 H 0.062 0.938 32 H 0.265 0.735 33 H 0.349 0.651 34 H 0.132 0.868 35 H 0.163 0.837 36 H 0.159 0.841 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.216 -1.689 18.936 19.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.155 4.155 3 C 0.073 3.927 4 H 0.028 0.972 5 C -0.545 4.545 6 H 0.065 0.935 7 C -0.174 4.174 8 N -0.582 5.582 9 Si 0.762 3.238 10 H -0.191 1.191 11 H -0.231 1.231 12 H -0.174 1.174 13 N -0.270 5.270 14 C -0.019 4.019 15 H 0.147 0.853 16 C -0.065 4.065 17 C -0.116 4.116 18 C -0.107 4.107 19 C -0.160 4.160 20 C 0.060 3.940 21 F -0.125 7.125 22 C -0.158 4.158 23 C 0.363 3.637 24 F -0.163 7.163 25 F -0.164 7.164 26 F -0.171 7.171 27 H 0.062 0.938 28 H 0.084 0.916 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.170 0.830 34 H 0.150 0.850 35 H 0.181 0.819 36 H 0.177 0.823 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -0.626 -2.195 18.933 19.070 hybrid contribution 1.573 0.135 -0.977 1.857 sum 0.947 -2.060 17.956 18.099 Atomic orbital electron populations 1.21368 0.94732 0.99417 1.01978 1.21778 0.98194 0.96595 0.98955 1.19676 0.93336 0.92249 0.87405 0.97186 1.21108 1.31244 1.12246 0.89935 0.93500 1.25568 0.96805 0.99543 0.95456 1.70004 1.47305 1.42435 0.98468 0.86069 0.79631 0.80777 0.77308 1.19134 1.23085 1.17373 1.60634 1.44642 1.17658 1.04115 1.21865 0.90125 0.96676 0.93277 0.85253 1.19079 0.97631 0.97349 0.92435 1.21260 0.94174 0.97844 0.98319 1.21311 0.99427 0.98323 0.91593 1.21486 0.97277 0.95373 1.01830 1.17707 0.98334 0.91785 0.86165 1.91482 1.93367 1.67692 1.59946 1.21029 1.01368 1.00917 0.92520 1.22075 0.83260 0.85133 0.73190 1.93145 1.81299 1.46235 1.95574 1.93161 1.73608 1.94980 1.54655 1.93210 1.78383 1.96669 1.48829 0.93832 0.91636 0.94525 0.94861 0.91923 0.92593 0.83014 0.84988 0.81939 0.82307 0.83845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.41 9.52 71.98 0.69 -3.72 16 2 C -0.12 -4.55 5.28 30.59 0.16 -4.39 16 3 C 0.18 7.65 1.47 44.17 0.06 7.71 16 4 H 0.01 0.46 5.48 -2.38 -0.01 0.45 16 5 C -0.51 -26.51 7.88 25.60 0.20 -26.31 16 6 H 0.05 2.71 7.84 -2.91 -0.02 2.69 16 7 C 0.02 1.36 5.45 84.65 0.46 1.82 16 8 N -0.94 -56.60 13.96 21.45 0.30 -56.30 16 9 Si 0.93 43.31 24.38 68.60 1.67 44.98 16 10 H -0.27 -11.76 6.86 99.48 0.68 -11.08 16 11 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 12 H -0.25 -10.74 6.53 99.48 0.65 -10.09 16 13 N -0.64 -22.20 4.69 -477.16 -2.24 -24.44 16 14 C 0.09 2.72 2.17 44.17 0.10 2.82 16 15 H 0.13 3.55 7.10 -2.39 -0.02 3.53 16 16 C -0.06 -1.61 4.63 -19.87 -0.09 -1.70 16 17 C -0.10 -2.25 8.56 22.27 0.19 -2.06 16 18 C -0.09 -1.59 10.04 22.26 0.22 -1.37 16 19 C -0.14 -2.53 10.03 22.31 0.22 -2.31 16 20 C 0.08 1.73 7.30 22.37 0.16 1.89 16 21 F -0.15 -3.33 17.27 44.97 0.78 -2.56 16 22 C -0.14 -3.22 9.65 22.31 0.22 -3.00 16 23 C 0.42 12.86 2.71 71.98 0.20 13.06 16 24 F -0.18 -5.52 15.52 44.97 0.70 -4.83 16 25 F -0.18 -5.22 17.02 44.97 0.77 -4.46 16 26 F -0.19 -6.83 15.62 44.97 0.70 -6.13 16 27 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.06 2.28 7.72 -2.38 -0.02 2.26 16 29 H 0.04 1.59 7.10 -2.39 -0.02 1.58 16 30 H 0.03 1.38 3.26 -2.39 -0.01 1.38 16 31 H 0.06 2.06 7.65 -2.39 -0.02 2.04 16 32 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 33 H 0.35 12.63 6.90 -89.70 -0.62 12.02 16 34 H 0.13 3.12 7.31 -2.91 -0.02 3.10 16 35 H 0.16 1.94 8.06 -2.91 -0.02 1.92 16 36 H 0.16 1.99 8.06 -2.91 -0.02 1.97 16 37 H 0.14 2.95 8.04 -2.91 -0.02 2.92 16 Total: -1.00 -60.32 314.59 5.89 -54.43 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: 0.42 Total: 16.85 kcal Atomic # 6 Polarization: -20.34 SS G_CDS: 2.79 Total: -17.55 kcal Atomic # 7 Polarization: -78.80 SS G_CDS: -1.94 Total: -80.74 kcal Atomic # 9 Polarization: -20.91 SS G_CDS: 2.94 Total: -17.97 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 1.67 Total: 44.98 kcal Total: -60.32 5.89 -54.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255153428.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.489 kcal (2) G-P(sol) polarization free energy of solvation -60.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds