Wall clock time and date at job start Tue Mar 31 2020 08:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38701 * 120.10897 * 2 1 4 4 N 1.39759 * 120.00469 * 359.70680 * 3 2 1 5 5 C 1.34777 * 119.99455 * 206.75400 * 4 3 2 6 6 O 1.21374 * 120.00423 * 355.78469 * 5 4 3 7 7 C 1.49351 * 119.99681 * 175.79374 * 5 4 3 8 8 O 1.21364 * 120.00096 * 359.97438 * 7 5 4 9 9 N 1.34781 * 120.00051 * 179.97438 * 7 5 4 10 10 C 1.46499 * 119.99812 * 179.97438 * 9 7 5 11 11 C 1.50707 * 109.46868 * 180.02562 * 10 9 7 12 12 H 1.07993 * 119.99913 * 359.97438 * 11 10 9 13 13 C 1.37874 * 120.00030 * 180.02562 * 11 10 9 14 14 N 1.31518 * 120.00203 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00267 * 179.97438 * 13 11 10 16 16 H 1.48508 * 109.46888 * 359.97438 * 15 13 11 17 17 H 1.48493 * 109.47532 * 119.99302 * 15 13 11 18 18 H 1.48498 * 109.47101 * 240.00132 * 15 13 11 19 19 C 1.39004 * 119.98756 * 179.97438 * 3 2 1 20 20 C 1.38241 * 120.21757 * 0.02562 * 19 3 2 21 21 C 1.37990 * 120.22879 * 359.97438 * 20 19 3 22 22 C 1.39433 * 120.11692 * 179.97438 * 2 1 3 23 23 C 1.47864 * 120.10788 * 359.97438 * 22 2 1 24 24 N 1.34780 * 120.00102 * 186.32978 * 23 22 2 25 25 O 1.21546 * 120.00038 * 6.33282 * 23 22 2 26 26 H 1.08997 * 109.47288 * 96.98376 * 1 2 3 27 27 H 1.09003 * 109.47301 * 216.97961 * 1 2 3 28 28 H 1.08998 * 109.47593 * 336.97997 * 1 2 3 29 29 H 0.96994 * 120.00161 * 26.75101 * 4 3 2 30 30 H 0.97002 * 119.99876 * 359.97438 * 9 7 5 31 31 H 1.08998 * 109.47179 * 299.99777 * 10 9 7 32 32 H 1.09002 * 109.47601 * 60.00120 * 10 9 7 33 33 H 0.96995 * 120.00172 * 180.02562 * 14 13 11 34 34 H 1.07995 * 119.88998 * 179.97438 * 19 3 2 35 35 H 1.08002 * 119.88502 * 179.97438 * 20 19 3 36 36 H 1.08003 * 119.99656 * 179.97438 * 21 20 19 37 37 H 0.97001 * 119.99925 * 0.02562 * 24 23 22 38 38 H 0.96994 * 119.99920 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2028 1.1999 0.0000 4 7 1.5064 2.4116 -0.0062 5 6 2.0767 3.5138 -0.5320 6 8 3.2225 3.4731 -0.9303 7 6 1.2988 4.7853 -0.6242 8 8 0.1530 4.8260 -0.2261 9 7 1.8692 5.8877 -1.1495 10 6 1.1059 7.1349 -1.2405 11 6 1.9657 8.2059 -1.8607 12 1 2.9794 7.9803 -2.1571 13 6 1.4585 9.4741 -2.0489 14 7 0.2242 9.7491 -1.6876 15 14 2.5245 10.8019 -2.8170 16 1 3.8632 10.2414 -3.1318 17 1 1.8853 11.2891 -4.0657 18 1 2.6727 11.9308 -1.8637 19 6 3.5928 1.1969 0.0005 20 6 4.2860 0.0009 0.0005 21 6 3.6029 -1.1980 0.0005 22 6 2.2066 -1.2061 0.0005 23 6 1.4723 -2.4895 0.0017 24 7 2.1446 -3.6505 0.1309 25 8 0.2624 -2.4976 -0.1139 26 1 -0.3634 -0.1249 -1.0200 27 1 -0.3634 -0.8210 0.6182 28 1 -0.3634 0.9458 0.4019 29 1 0.6127 2.4593 0.3678 30 1 2.7851 5.8554 -1.4673 31 1 0.2222 6.9757 -1.8584 32 1 0.7996 7.4472 -0.2420 33 1 -0.1327 10.6411 -1.8203 34 1 4.1330 2.1321 0.0001 35 1 5.3660 0.0049 0.0005 36 1 4.1482 -2.1303 0.0001 37 1 3.1102 -3.6441 0.2235 38 1 1.6629 -4.4924 0.1320 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256141428.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:24 Heat of formation + Delta-G solvation = -75.919376 kcal Electronic energy + Delta-G solvation = -23750.015627 eV Core-core repulsion = 19978.656498 eV Total energy + Delta-G solvation = -3771.359129 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.21168 -40.15188 -38.73311 -37.73596 -35.46150 -34.45268 -33.97011 -32.66614 -32.38084 -30.21576 -27.84967 -27.24838 -25.03819 -24.10093 -22.51171 -21.48650 -20.94867 -19.87656 -18.82988 -18.34479 -17.26536 -16.76493 -16.32272 -15.99624 -15.79579 -15.58479 -15.23194 -15.16081 -14.65131 -14.35191 -14.20785 -13.86897 -13.53328 -13.35315 -13.19300 -12.73179 -12.40598 -12.18126 -12.10157 -11.95020 -11.55145 -11.19523 -10.99293 -10.96926 -10.72572 -10.35242 -10.11677 -9.96577 -9.49651 -9.19309 -9.02927 -8.87151 -8.32505 -8.15175 -6.24879 -4.32408 0.58264 0.91103 1.74854 2.48421 2.64162 3.16415 3.20877 3.28496 3.32193 3.46632 3.66214 3.95726 4.29063 4.45659 4.54597 4.57620 4.83810 4.97334 5.09599 5.12034 5.23248 5.47377 5.52813 5.65964 5.91124 5.96911 6.07859 6.17515 6.22731 6.44464 6.68226 6.92761 6.96329 7.03672 7.14817 7.32500 7.50941 7.74977 7.83474 7.91036 8.31905 8.50945 8.78887 9.34087 10.85204 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.035219 B = 0.002545 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.831414 B =11000.234404 C =11633.939019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.047 4.047 3 C 0.139 3.861 4 N -0.645 5.645 5 C 0.510 3.490 6 O -0.504 6.504 7 C 0.491 3.509 8 O -0.534 6.534 9 N -0.669 5.669 10 C 0.246 3.754 11 C -0.546 4.546 12 H 0.067 0.933 13 C 0.065 3.935 14 N -0.885 5.885 15 Si 0.907 3.093 16 H -0.271 1.271 17 H -0.281 1.281 18 H -0.281 1.281 19 C -0.101 4.101 20 C -0.114 4.114 21 C -0.102 4.102 22 C -0.130 4.130 23 C 0.565 3.435 24 N -0.852 5.852 25 O -0.532 6.532 26 H 0.080 0.920 27 H 0.098 0.902 28 H 0.056 0.944 29 H 0.424 0.576 30 H 0.405 0.595 31 H 0.036 0.964 32 H 0.036 0.964 33 H 0.267 0.733 34 H 0.160 0.840 35 H 0.133 0.867 36 H 0.126 0.874 37 H 0.400 0.600 38 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.606 -24.593 4.891 26.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.050 4.050 3 C 0.044 3.956 4 N -0.292 5.292 5 C 0.294 3.706 6 O -0.378 6.378 7 C 0.270 3.730 8 O -0.413 6.413 9 N -0.318 5.318 10 C 0.126 3.874 11 C -0.585 4.585 12 H 0.085 0.915 13 C -0.139 4.139 14 N -0.522 5.522 15 Si 0.734 3.266 16 H -0.195 1.195 17 H -0.207 1.207 18 H -0.207 1.207 19 C -0.121 4.121 20 C -0.132 4.132 21 C -0.121 4.121 22 C -0.134 4.134 23 C 0.352 3.648 24 N -0.417 5.417 25 O -0.410 6.410 26 H 0.098 0.902 27 H 0.116 0.884 28 H 0.075 0.925 29 H 0.264 0.736 30 H 0.240 0.760 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.077 0.923 34 H 0.177 0.823 35 H 0.151 0.849 36 H 0.143 0.857 37 H 0.230 0.770 38 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 6.644 -24.111 4.774 25.461 hybrid contribution 0.882 0.399 -0.364 1.034 sum 7.526 -23.712 4.410 25.265 Atomic orbital electron populations 1.21028 0.89532 1.02937 1.04150 1.19756 0.96940 0.90177 0.98177 1.17580 0.91544 0.84575 1.01913 1.43286 1.20838 1.06795 1.58294 1.20949 0.87109 0.85375 0.77198 1.90648 1.17101 1.84271 1.45793 1.19620 0.87138 0.84553 0.81738 1.90750 1.17219 1.84513 1.48771 1.46426 1.17860 1.10660 1.56844 1.19376 0.92028 0.77747 0.98265 1.21228 0.99648 0.94981 1.42603 0.91476 1.24945 0.95230 0.98539 0.95205 1.69972 1.14417 1.21694 1.46091 0.86305 0.80282 0.81146 0.78892 1.19500 1.20713 1.20721 1.21920 0.92427 1.00688 0.97110 1.21005 1.00328 0.91441 1.00462 1.21202 0.92586 0.98563 0.99796 1.19387 0.93451 0.92355 1.08219 1.18230 0.86881 0.84163 0.75490 1.43758 1.11909 1.08505 1.77495 1.90788 1.13808 1.87215 1.49188 0.90157 0.88368 0.92483 0.73577 0.76042 0.94641 0.94625 0.92342 0.82310 0.84893 0.85666 0.76997 0.76473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.39 8.54 36.01 0.31 -1.08 16 2 C -0.05 -0.56 5.93 -104.01 -0.62 -1.17 16 3 C 0.14 1.78 6.42 -83.79 -0.54 1.24 16 4 N -0.65 -8.91 5.13 -10.32 -0.05 -8.96 16 5 C 0.51 8.35 7.77 -11.63 -0.09 8.26 16 6 O -0.50 -8.52 13.42 5.48 0.07 -8.45 16 7 C 0.49 9.60 7.89 -11.63 -0.09 9.51 16 8 O -0.53 -11.60 16.48 5.48 0.09 -11.51 16 9 N -0.67 -14.06 5.54 -61.94 -0.34 -14.40 16 10 C 0.25 6.26 5.43 -5.19 -0.03 6.23 16 11 C -0.55 -14.50 9.28 -34.44 -0.32 -14.82 16 12 H 0.07 1.69 7.60 -52.49 -0.40 1.29 16 13 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 14 N -0.88 -25.33 13.29 55.43 0.74 -24.60 16 15 Si 0.91 20.55 29.54 -169.99 -5.02 15.53 16 16 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 17 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 18 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 19 C -0.10 -1.21 8.77 -39.30 -0.34 -1.55 16 20 C -0.11 -1.02 10.02 -39.67 -0.40 -1.42 16 21 C -0.10 -0.80 9.52 -39.15 -0.37 -1.17 16 22 C -0.13 -1.32 5.87 -104.99 -0.62 -1.94 16 23 C 0.57 5.55 7.97 -12.32 -0.10 5.46 16 24 N -0.85 -4.54 8.82 30.53 0.27 -4.27 16 25 O -0.53 -6.97 14.19 5.33 0.08 -6.90 16 26 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.10 1.18 5.88 -51.93 -0.31 0.87 16 28 H 0.06 0.60 6.17 -51.93 -0.32 0.28 16 29 H 0.42 5.42 6.33 -40.82 -0.26 5.16 16 30 H 0.40 7.81 7.79 -40.82 -0.32 7.50 16 31 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 34 H 0.16 2.09 5.57 -52.49 -0.29 1.79 16 35 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 36 H 0.13 0.51 6.45 -52.48 -0.34 0.17 16 37 H 0.40 1.03 6.90 -40.82 -0.28 0.74 16 38 H 0.40 1.63 8.93 -40.82 -0.36 1.26 16 LS Contribution 329.02 15.07 4.96 4.96 Total: -1.00 -32.62 329.02 -6.22 -38.84 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -3.70 Total: 10.56 kcal Atomic # 6 Polarization: 12.50 SS G_CDS: -3.30 Total: 9.20 kcal Atomic # 7 Polarization: -52.84 SS G_CDS: 0.61 Total: -52.23 kcal Atomic # 8 Polarization: -27.09 SS G_CDS: 0.24 Total: -26.85 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.62 -6.22 -38.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256141428.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.075 kcal (2) G-P(sol) polarization free energy of solvation -32.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds