Wall clock time and date at job start Tue Mar 31 2020 08:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38701 * 120.10897 * 2 1 4 4 N 1.39759 * 120.00469 * 359.70680 * 3 2 1 5 5 C 1.34777 * 119.99455 * 206.75400 * 4 3 2 6 6 O 1.21374 * 120.00423 * 355.78469 * 5 4 3 7 7 C 1.49351 * 119.99681 * 175.79374 * 5 4 3 8 8 O 1.21364 * 120.00096 * 359.97438 * 7 5 4 9 9 N 1.34781 * 120.00051 * 179.97438 * 7 5 4 10 10 C 1.46499 * 119.99812 * 179.97438 * 9 7 5 11 11 C 1.50707 * 109.46868 * 180.02562 * 10 9 7 12 12 H 1.07993 * 119.99913 * 359.97438 * 11 10 9 13 13 C 1.37874 * 120.00030 * 180.02562 * 11 10 9 14 14 N 1.31518 * 120.00203 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00267 * 179.97438 * 13 11 10 16 16 H 1.48508 * 109.46888 * 359.97438 * 15 13 11 17 17 H 1.48493 * 109.47532 * 119.99302 * 15 13 11 18 18 H 1.48498 * 109.47101 * 240.00132 * 15 13 11 19 19 C 1.39004 * 119.98756 * 179.97438 * 3 2 1 20 20 C 1.38241 * 120.21757 * 0.02562 * 19 3 2 21 21 C 1.37990 * 120.22879 * 359.97438 * 20 19 3 22 22 C 1.39433 * 120.11692 * 179.97438 * 2 1 3 23 23 C 1.47864 * 120.10788 * 359.97438 * 22 2 1 24 24 N 1.34780 * 120.00102 * 186.32978 * 23 22 2 25 25 O 1.21546 * 120.00038 * 6.33282 * 23 22 2 26 26 H 1.08997 * 109.47288 * 96.98376 * 1 2 3 27 27 H 1.09003 * 109.47301 * 216.97961 * 1 2 3 28 28 H 1.08998 * 109.47593 * 336.97997 * 1 2 3 29 29 H 0.96994 * 120.00161 * 26.75101 * 4 3 2 30 30 H 0.97002 * 119.99876 * 359.97438 * 9 7 5 31 31 H 1.08998 * 109.47179 * 299.99777 * 10 9 7 32 32 H 1.09002 * 109.47601 * 60.00120 * 10 9 7 33 33 H 0.96995 * 120.00172 * 180.02562 * 14 13 11 34 34 H 1.07995 * 119.88998 * 179.97438 * 19 3 2 35 35 H 1.08002 * 119.88502 * 179.97438 * 20 19 3 36 36 H 1.08003 * 119.99656 * 179.97438 * 21 20 19 37 37 H 0.97001 * 119.99925 * 0.02562 * 24 23 22 38 38 H 0.96994 * 119.99920 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2028 1.1999 0.0000 4 7 1.5064 2.4116 -0.0062 5 6 2.0767 3.5138 -0.5320 6 8 3.2225 3.4731 -0.9303 7 6 1.2988 4.7853 -0.6242 8 8 0.1530 4.8260 -0.2261 9 7 1.8692 5.8877 -1.1495 10 6 1.1059 7.1349 -1.2405 11 6 1.9657 8.2059 -1.8607 12 1 2.9794 7.9803 -2.1571 13 6 1.4585 9.4741 -2.0489 14 7 0.2242 9.7491 -1.6876 15 14 2.5245 10.8019 -2.8170 16 1 3.8632 10.2414 -3.1318 17 1 1.8853 11.2891 -4.0657 18 1 2.6727 11.9308 -1.8637 19 6 3.5928 1.1969 0.0005 20 6 4.2860 0.0009 0.0005 21 6 3.6029 -1.1980 0.0005 22 6 2.2066 -1.2061 0.0005 23 6 1.4723 -2.4895 0.0017 24 7 2.1446 -3.6505 0.1309 25 8 0.2624 -2.4976 -0.1139 26 1 -0.3634 -0.1249 -1.0200 27 1 -0.3634 -0.8210 0.6182 28 1 -0.3634 0.9458 0.4019 29 1 0.6127 2.4593 0.3678 30 1 2.7851 5.8554 -1.4673 31 1 0.2222 6.9757 -1.8584 32 1 0.7996 7.4472 -0.2420 33 1 -0.1327 10.6411 -1.8203 34 1 4.1330 2.1321 0.0001 35 1 5.3660 0.0049 0.0005 36 1 4.1482 -2.1303 0.0001 37 1 3.1102 -3.6441 0.2235 38 1 1.6629 -4.4924 0.1320 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256141428.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:24 Heat of formation + Delta-G solvation = -102.560262 kcal Electronic energy + Delta-G solvation = -23751.170862 eV Core-core repulsion = 19978.656498 eV Total energy + Delta-G solvation = -3772.514364 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.34423 -41.17588 -40.02639 -38.88817 -36.74112 -35.98940 -34.78971 -34.37743 -33.48950 -31.13857 -29.72487 -28.18253 -26.47236 -25.15339 -24.13857 -22.37025 -22.12184 -21.15218 -20.21999 -19.17906 -18.41309 -18.02154 -17.67562 -17.24232 -16.97126 -16.87343 -16.64965 -16.19528 -16.05059 -15.63812 -15.18195 -15.11965 -14.82886 -14.38044 -14.31524 -14.10082 -13.92990 -13.63223 -13.31235 -13.09891 -12.97127 -12.76847 -12.48743 -12.33677 -12.19802 -11.73090 -11.50820 -10.92336 -10.86637 -10.69079 -10.58405 -10.08702 -9.86575 -9.24963 -8.32159 -6.48338 -0.26210 -0.07641 0.51688 1.18658 1.44376 1.44755 1.58640 1.80802 2.06802 2.34604 2.49689 2.66289 2.78411 3.03437 3.37024 3.72925 3.80182 3.93850 4.03132 4.26785 4.36320 4.64963 4.70869 4.74193 4.95814 5.02717 5.14350 5.15766 5.20950 5.23411 5.33418 5.38261 5.50647 5.76482 5.82708 5.91107 5.92663 6.38395 6.44368 6.56060 6.67533 6.96768 7.24725 7.31910 8.79734 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.035219 B = 0.002545 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.831414 B =11000.234404 C =11633.939019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.059 4.059 3 C 0.112 3.888 4 N -0.632 5.632 5 C 0.522 3.478 6 O -0.509 6.509 7 C 0.493 3.507 8 O -0.558 6.558 9 N -0.670 5.670 10 C 0.262 3.738 11 C -0.560 4.560 12 H 0.081 0.919 13 C 0.009 3.991 14 N -0.926 5.926 15 Si 0.983 3.017 16 H -0.257 1.257 17 H -0.278 1.278 18 H -0.277 1.277 19 C -0.114 4.114 20 C -0.108 4.108 21 C -0.080 4.080 22 C -0.138 4.138 23 C 0.562 3.438 24 N -0.827 5.827 25 O -0.573 6.573 26 H 0.070 0.930 27 H 0.093 0.907 28 H 0.059 0.941 29 H 0.427 0.573 30 H 0.414 0.586 31 H 0.004 0.996 32 H 0.006 0.994 33 H 0.271 0.729 34 H 0.145 0.855 35 H 0.166 0.834 36 H 0.173 0.827 37 H 0.417 0.583 38 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.548 -26.653 4.641 29.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.063 4.063 3 C 0.018 3.982 4 N -0.279 5.279 5 C 0.304 3.696 6 O -0.384 6.384 7 C 0.273 3.727 8 O -0.438 6.438 9 N -0.320 5.320 10 C 0.140 3.860 11 C -0.598 4.598 12 H 0.099 0.901 13 C -0.191 4.191 14 N -0.564 5.564 15 Si 0.807 3.193 16 H -0.180 1.180 17 H -0.203 1.203 18 H -0.203 1.203 19 C -0.135 4.135 20 C -0.126 4.126 21 C -0.098 4.098 22 C -0.142 4.142 23 C 0.348 3.652 24 N -0.392 5.392 25 O -0.454 6.454 26 H 0.088 0.912 27 H 0.111 0.889 28 H 0.078 0.922 29 H 0.267 0.733 30 H 0.251 0.749 31 H 0.022 0.978 32 H 0.024 0.976 33 H 0.079 0.921 34 H 0.163 0.837 35 H 0.183 0.817 36 H 0.190 0.810 37 H 0.250 0.750 38 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 9.644 -26.264 4.542 28.345 hybrid contribution -0.016 0.833 -0.225 0.863 sum 9.628 -25.432 4.318 27.534 Atomic orbital electron populations 1.20946 0.90022 1.02829 1.03432 1.19830 0.96881 0.90693 0.98858 1.17716 0.92086 0.83927 1.04430 1.43119 1.20873 1.06683 1.57240 1.20056 0.86655 0.84737 0.78170 1.90656 1.16923 1.84235 1.46608 1.20170 0.86953 0.85362 0.80238 1.90729 1.18544 1.85182 1.49355 1.46134 1.18044 1.09988 1.57821 1.18856 0.91586 0.79643 0.95869 1.21590 1.00289 0.95400 1.42490 0.90074 1.25980 0.96513 1.01141 0.95503 1.70108 1.16433 1.22530 1.47329 0.85127 0.78742 0.77703 0.77775 1.18028 1.20336 1.20265 1.21963 0.92018 1.01589 0.97887 1.21374 1.01889 0.90478 0.98878 1.21679 0.91547 1.00192 0.96424 1.19608 0.94648 0.91912 1.08036 1.18264 0.86442 0.85034 0.75423 1.43544 1.12801 1.07569 1.75302 1.90778 1.15531 1.87771 1.51347 0.91157 0.88888 0.92222 0.73297 0.74887 0.97759 0.97597 0.92054 0.83731 0.81689 0.80980 0.75011 0.75364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.75 8.54 71.24 0.61 -2.14 16 2 C -0.06 -1.37 5.93 -19.47 -0.12 -1.49 16 3 C 0.11 2.82 6.42 38.17 0.24 3.06 16 4 N -0.63 -17.76 5.13 -304.93 -1.57 -19.33 16 5 C 0.52 17.31 7.77 87.24 0.68 17.99 16 6 O -0.51 -17.14 13.42 -3.32 -0.04 -17.19 16 7 C 0.49 19.92 7.89 87.24 0.69 20.61 16 8 O -0.56 -25.35 16.48 -3.29 -0.05 -25.40 16 9 N -0.67 -29.04 5.54 -468.22 -2.59 -31.63 16 10 C 0.26 13.96 5.43 85.64 0.46 14.42 16 11 C -0.56 -30.12 9.28 25.60 0.24 -29.88 16 12 H 0.08 4.04 7.60 -2.91 -0.02 4.02 16 13 C 0.01 0.49 5.46 84.65 0.46 0.95 16 14 N -0.93 -54.30 13.29 21.45 0.28 -54.01 16 15 Si 0.98 41.97 29.54 68.60 2.03 43.99 16 16 H -0.26 -10.29 7.11 99.48 0.71 -9.59 16 17 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 18 H -0.28 -11.57 7.11 99.48 0.71 -10.87 16 19 C -0.11 -2.56 8.77 22.45 0.20 -2.37 16 20 C -0.11 -1.55 10.02 22.21 0.22 -1.32 16 21 C -0.08 -0.91 9.52 22.55 0.21 -0.70 16 22 C -0.14 -2.49 5.87 -20.11 -0.12 -2.61 16 23 C 0.56 9.87 7.97 86.79 0.69 10.57 16 24 N -0.83 -5.96 8.82 -175.59 -1.55 -7.51 16 25 O -0.57 -14.70 14.19 -3.86 -0.05 -14.75 16 26 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.09 2.31 5.88 -2.39 -0.01 2.29 16 28 H 0.06 1.31 6.17 -2.39 -0.01 1.30 16 29 H 0.43 11.32 6.33 -92.71 -0.59 10.73 16 30 H 0.41 16.20 7.79 -92.71 -0.72 15.48 16 31 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 32 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 34 H 0.15 3.67 5.57 -2.91 -0.02 3.66 16 35 H 0.17 1.32 8.06 -2.91 -0.02 1.29 16 36 H 0.17 0.31 6.45 -2.91 -0.02 0.29 16 37 H 0.42 0.14 6.90 -92.71 -0.64 -0.50 16 38 H 0.41 2.06 8.93 -92.71 -0.83 1.23 16 Total: -1.00 -73.33 329.02 -0.67 -74.00 By element: Atomic # 1 Polarization: 26.33 SS G_CDS: -1.59 Total: 24.74 kcal Atomic # 6 Polarization: 22.62 SS G_CDS: 4.48 Total: 27.10 kcal Atomic # 7 Polarization: -107.05 SS G_CDS: -5.42 Total: -112.48 kcal Atomic # 8 Polarization: -57.19 SS G_CDS: -0.15 Total: -57.34 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 43.99 kcal Total: -73.33 -0.67 -74.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256141428.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.563 kcal (2) G-P(sol) polarization free energy of solvation -73.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds