Wall clock time and date at job start Tue Mar 31 2020 08:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38242 * 119.89112 * 2 1 4 4 C 1.37991 * 120.23046 * 180.25507 * 3 2 1 5 5 C 1.39628 * 120.00112 * 359.49256 * 4 3 2 6 6 C 1.47862 * 120.10221 * 180.27708 * 5 4 3 7 7 N 1.34775 * 120.00508 * 359.97438 * 6 5 4 8 8 O 1.21555 * 120.00028 * 179.97438 * 6 5 4 9 9 C 1.39441 * 119.78896 * 0.24724 * 5 4 3 10 10 C 1.38693 * 119.77083 * 0.02562 * 9 5 4 11 11 N 1.39754 * 120.00598 * 180.02562 * 10 9 5 12 12 C 1.34773 * 120.00002 * 325.24334 * 11 10 9 13 13 O 1.21380 * 120.00353 * 4.51476 * 12 11 10 14 14 C 1.49361 * 120.00333 * 184.51864 * 12 11 10 15 15 O 1.21358 * 119.99393 * 0.02562 * 14 12 11 16 16 N 1.34774 * 120.00355 * 179.97438 * 14 12 11 17 17 C 1.46490 * 120.00237 * 180.02562 * 16 14 12 18 18 C 1.50702 * 109.47493 * 180.02562 * 17 16 14 19 19 H 1.08001 * 119.99846 * 0.02562 * 18 17 16 20 20 C 1.37879 * 120.00299 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00131 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 119.99855 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.46861 * 89.99844 * 22 20 18 24 24 H 1.48497 * 109.47321 * 209.99583 * 22 20 18 25 25 H 1.48503 * 109.47199 * 329.99864 * 22 20 18 26 26 H 1.08997 * 109.47160 * 270.25426 * 1 2 3 27 27 H 1.08995 * 109.46788 * 30.25688 * 1 2 3 28 28 H 1.08995 * 109.46936 * 150.25624 * 1 2 3 29 29 H 1.07999 * 119.88814 * 0.02562 * 3 2 1 30 30 H 1.07996 * 119.99887 * 179.75848 * 4 3 2 31 31 H 0.97003 * 119.99369 * 0.02562 * 7 6 5 32 32 H 0.97002 * 120.00297 * 180.02562 * 7 6 5 33 33 H 1.07998 * 120.11470 * 179.97438 * 9 5 4 34 34 H 0.97002 * 120.00243 * 145.24021 * 11 10 9 35 35 H 0.97004 * 119.99519 * 0.02562 * 16 14 12 36 36 H 1.08999 * 109.47138 * 300.00158 * 17 16 14 37 37 H 1.08996 * 109.47280 * 59.99930 * 17 16 14 38 38 H 0.96998 * 120.00128 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.1985 0.0000 4 6 3.5758 1.2067 -0.0053 5 6 4.2812 0.0017 0.0000 6 6 5.7598 0.0079 0.0005 7 7 6.4289 1.1778 -0.0047 8 8 6.3720 -1.0423 0.0056 9 6 3.5867 -1.2075 0.0055 10 6 2.1998 -1.2051 0.0050 11 7 1.4988 -2.4141 0.0110 12 6 1.9906 -3.4815 -0.6488 13 8 3.0805 -3.4178 -1.1792 14 6 1.1945 -4.7427 -0.7275 15 8 0.1045 -4.8062 -0.1976 16 7 1.6860 -5.8099 -1.3877 17 6 0.9049 -7.0468 -1.4653 18 6 1.6731 -8.0776 -2.2516 19 1 2.6461 -7.8357 -2.6530 20 6 1.1342 -9.3299 -2.4577 21 7 1.8044 -10.2293 -3.1444 22 14 -0.5485 -9.7485 -1.7629 23 1 -1.5947 -9.4066 -2.7598 24 1 -0.6109 -11.2005 -1.4580 25 1 -0.7776 -8.9710 -0.5185 26 1 -0.3633 0.0046 1.0276 27 1 -0.3633 0.8876 -0.5178 28 1 -0.3633 -0.8922 -0.5098 29 1 1.6524 2.1317 0.0004 30 1 4.1102 2.1452 -0.0092 31 1 5.9403 2.0158 -0.0084 32 1 7.3989 1.1818 -0.0047 33 1 4.1270 -2.1426 0.0092 34 1 0.6584 -2.4851 0.4901 35 1 2.5571 -5.7589 -1.8115 36 1 0.7185 -7.4225 -0.4593 37 1 -0.0453 -6.8459 -1.9600 38 1 1.4252 -11.1102 -3.2897 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320921968.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:26 Heat of formation + Delta-G solvation = -80.310706 kcal Electronic energy + Delta-G solvation = -23819.338287 eV Core-core repulsion = 20047.788736 eV Total energy + Delta-G solvation = -3771.549551 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.16970 -39.99950 -38.87108 -37.91224 -35.41719 -34.45391 -33.89641 -32.84427 -32.40065 -30.21597 -28.41919 -27.72631 -25.05148 -23.31683 -22.85760 -21.60342 -20.64724 -20.09175 -18.91670 -18.29258 -17.37635 -16.77949 -16.53809 -15.94625 -15.80680 -15.53714 -15.16420 -14.99623 -14.80031 -14.37010 -14.16576 -14.07487 -13.88795 -13.61617 -13.22937 -12.75584 -12.45994 -12.38399 -12.23022 -12.04946 -11.89556 -11.28558 -11.06438 -10.84427 -10.66648 -10.28117 -10.04008 -9.99285 -9.56733 -9.33673 -9.07351 -8.86702 -8.47690 -8.40168 -6.25046 -4.29116 0.48041 0.96288 1.67178 2.44875 2.61516 3.19448 3.22835 3.30162 3.35489 3.42629 3.61393 3.91850 4.28165 4.36782 4.43073 4.66723 4.69590 4.86137 4.95452 5.08912 5.11730 5.26125 5.30865 5.56478 5.69544 5.85469 5.98502 6.04168 6.10770 6.47499 6.57374 6.63677 6.82479 6.90326 7.00399 7.02637 7.23895 7.65310 7.97883 7.99974 8.33720 8.44240 8.75285 9.32005 10.86746 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.021148 B = 0.003033 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.674380 B = 9229.852328 C =10403.308950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.080 4.080 3 C -0.111 4.111 4 C -0.099 4.099 5 C -0.129 4.129 6 C 0.563 3.437 7 N -0.853 5.853 8 O -0.530 6.530 9 C -0.057 4.057 10 C 0.139 3.861 11 N -0.650 5.650 12 C 0.507 3.493 13 O -0.493 6.493 14 C 0.495 3.505 15 O -0.538 6.538 16 N -0.662 5.662 17 C 0.218 3.782 18 C -0.549 4.549 19 H 0.083 0.917 20 C 0.080 3.920 21 N -0.888 5.888 22 Si 0.877 3.123 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.260 1.260 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.134 0.866 30 H 0.127 0.873 31 H 0.399 0.601 32 H 0.405 0.595 33 H 0.157 0.843 34 H 0.424 0.576 35 H 0.411 0.589 36 H 0.034 0.966 37 H 0.029 0.971 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.604 28.040 8.040 29.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.083 4.083 3 C -0.129 4.129 4 C -0.118 4.118 5 C -0.133 4.133 6 C 0.349 3.651 7 N -0.418 5.418 8 O -0.406 6.406 9 C -0.078 4.078 10 C 0.044 3.956 11 N -0.297 5.297 12 C 0.290 3.710 13 O -0.365 6.365 14 C 0.274 3.726 15 O -0.418 6.418 16 N -0.311 5.311 17 C 0.097 3.903 18 C -0.587 4.587 19 H 0.101 0.899 20 C -0.125 4.125 21 N -0.524 5.524 22 Si 0.703 3.297 23 H -0.197 1.197 24 H -0.208 1.208 25 H -0.185 1.185 26 H 0.096 0.904 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.152 0.848 30 H 0.145 0.855 31 H 0.229 0.771 32 H 0.236 0.764 33 H 0.174 0.826 34 H 0.263 0.737 35 H 0.247 0.753 36 H 0.052 0.948 37 H 0.047 0.953 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.823 26.918 7.911 28.068 hybrid contribution -0.633 0.146 0.235 0.691 sum 0.190 27.064 8.146 28.264 Atomic orbital electron populations 1.20863 0.90270 1.03853 1.03014 1.19969 0.96650 0.91590 1.00081 1.20756 0.93655 0.97147 1.01367 1.21206 0.94457 0.96700 0.99430 1.19694 0.92731 0.93938 1.06948 1.18252 0.87516 0.83782 0.75565 1.43727 1.11103 1.08339 1.78596 1.90872 1.69618 1.31396 1.48705 1.21480 0.92253 0.99347 0.94705 1.17480 0.90963 0.84888 1.02220 1.43171 1.26372 1.08683 1.51518 1.20846 0.86597 0.85158 0.78443 1.90798 1.19701 1.82530 1.43486 1.19654 0.86548 0.84544 0.81884 1.90723 1.20775 1.83331 1.46927 1.46133 1.22668 1.12286 1.50053 1.19726 0.92102 0.80527 0.97991 1.21054 1.06002 0.96319 1.35308 0.89862 1.24783 0.97748 0.95700 0.94244 1.69875 1.38205 1.05390 1.38977 0.86820 0.84204 0.78149 0.80518 1.19750 1.20759 1.18482 0.90365 0.90585 0.90922 0.84825 0.85514 0.77109 0.76423 0.82556 0.73728 0.75270 0.94840 0.95311 0.92105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.85 9.46 36.01 0.34 -0.50 16 2 C -0.08 -0.73 5.90 -104.34 -0.62 -1.35 16 3 C -0.11 -0.80 9.67 -39.67 -0.38 -1.19 16 4 C -0.10 -0.74 9.54 -39.15 -0.37 -1.11 16 5 C -0.13 -1.45 5.87 -104.99 -0.62 -2.07 16 6 C 0.56 6.68 8.05 -12.32 -0.10 6.58 16 7 N -0.85 -5.62 8.82 30.53 0.27 -5.35 16 8 O -0.53 -8.88 17.18 5.32 0.09 -8.79 16 9 C -0.06 -0.79 8.24 -38.97 -0.32 -1.11 16 10 C 0.14 1.70 6.28 -83.79 -0.53 1.17 16 11 N -0.65 -8.47 4.72 -10.32 -0.05 -8.52 16 12 C 0.51 8.36 7.73 -11.63 -0.09 8.27 16 13 O -0.49 -9.10 13.89 5.47 0.08 -9.03 16 14 C 0.50 9.39 7.89 -11.63 -0.09 9.30 16 15 O -0.54 -10.91 16.48 5.49 0.09 -10.81 16 16 N -0.66 -13.83 5.54 -61.95 -0.34 -14.17 16 17 C 0.22 5.23 4.50 -5.20 -0.02 5.21 16 18 C -0.55 -15.04 9.83 -34.44 -0.34 -15.37 16 19 H 0.08 2.41 7.84 -52.49 -0.41 2.00 16 20 C 0.08 2.23 5.47 -17.82 -0.10 2.14 16 21 N -0.89 -26.30 13.96 55.43 0.77 -25.53 16 22 Si 0.88 20.88 27.47 -169.99 -4.67 16.21 16 23 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 25 H -0.26 -6.06 6.54 56.52 0.37 -5.69 16 26 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.08 0.40 8.08 -51.93 -0.42 -0.02 16 28 H 0.07 0.57 7.16 -51.93 -0.37 0.20 16 29 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 30 H 0.13 0.47 6.40 -52.49 -0.34 0.13 16 31 H 0.40 1.28 6.86 -40.82 -0.28 1.00 16 32 H 0.40 2.19 8.93 -40.82 -0.36 1.83 16 33 H 0.16 2.63 5.78 -52.49 -0.30 2.33 16 34 H 0.42 4.73 7.31 -40.82 -0.30 4.43 16 35 H 0.41 8.28 7.79 -40.82 -0.32 7.96 16 36 H 0.03 0.83 7.20 -51.93 -0.37 0.45 16 37 H 0.03 0.70 7.57 -51.93 -0.39 0.31 16 38 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 332.67 15.07 5.01 5.01 Total: -1.00 -35.14 332.67 -5.87 -41.01 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -3.88 Total: 10.00 kcal Atomic # 6 Polarization: 13.20 SS G_CDS: -3.24 Total: 9.96 kcal Atomic # 7 Polarization: -54.21 SS G_CDS: 0.65 Total: -53.56 kcal Atomic # 8 Polarization: -28.89 SS G_CDS: 0.26 Total: -28.63 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.67 Total: 16.21 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -35.14 -5.87 -41.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320921968.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.304 kcal (2) G-P(sol) polarization free energy of solvation -35.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds